GENSCAN 1.0	Date run: 11-Nov-116	Time: 17:00:43

Sequence gi568815594f:54158769_54395269 : 236501 bp : 43.08% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 Intr -   7355   7269   87  2  0   82   97     8 0.158   1.27
 1.02 Intr -   8729   8608  122  0  2   72   56    58 0.262   1.21
 1.01 Init -  11590  11515   76  1  1   81   96    70 0.433   8.35
 1.00 Prom -  16842  16803   40                              -3.36

 2.00 Prom +  18836  18875   40                              -6.16
 2.01 Init +  19580  19634   55  1  1   69   65    53 0.608   2.62
 2.02 Intr +  28414  28518  105  2  0   61   39    91 0.082   1.69
 2.03 Intr +  44790  44840   51  1  0   49   95    64 0.249   2.08
 2.04 Intr +  58966  59076  111  2  0   98    3   101 0.453   2.95
 2.05 Intr +  67306  67417  112  2  1   69   70    70 0.623   2.74
 2.06 Intr +  71750  71838   89  2  2   66  110    16 0.589   1.21
 2.07 Intr +  72342  72443  102  1  0   96   35    80 0.550   3.65
 2.08 Intr +  72853  72984  132  2  0   58   42   100 0.458   3.02
 2.09 Intr +  74334  74987  654  1  0   63   48   209 0.569   6.25
 2.10 Term +  75325  75701  377  2  2  -12   54   260 0.741   7.50
 2.11 PlyA +  79440  79445    6                               1.05

 3.00 Prom +  82153  82192   40                              -4.36
 3.01 Sngl +  85843  86172  330  0  0   88   44   308 0.989  22.42
 3.02 PlyA +  86256  86261    6                               1.05

 4.00 Prom +  87248  87287   40                              -9.06
 4.01 Init +  88140  88782  643  2  1   55   77   286 0.967  19.69
 4.02 Intr +  89432  89720  289  0  1   75    8   177 0.025   4.70
 4.03 Intr +  92937  92998   62  0  2   66   68    36 0.033  -2.22
 4.04 Intr + 102327 102644  318  1  0   86  109   207 0.941  18.53
 4.05 Intr + 104899 105159  261  2  0   79   75   244 0.979  19.66
 4.06 Intr + 106151 106281  131  0  2   75   66   125 0.982   9.41
 4.07 Intr + 108521 108692  172  1  1   65   43   196 0.748  12.32
 4.08 Intr + 108784 108973  190  2  1   75   98   134 0.999  11.74
 4.09 Intr + 111865 111980  116  1  2   47   95    81 0.987   4.79
 4.10 Intr + 113626 113684   59  2  2  100   89    27 0.008   2.60
 4.11 Intr + 114752 114962  211  1  1   43   81   208 0.007  14.09
 4.12 Intr + 115763 115857   95  0  2   69   76    76 0.988   4.18
 4.13 Intr + 116073 116205  133  2  1   81  111    73 0.999   9.12
 4.14 Intr + 118620 118724  105  1  0   92  111    37 0.990   6.59
 4.15 Intr + 119128 119238  111  2  0   86   80    61 0.978   5.45
 4.16 Intr + 119594 119747  154  0  1  102   90   131 0.996  13.83
 4.17 Intr + 121548 121714  167  0  2   94   66    88 0.986   6.80
 4.18 Intr + 126603 126718  116  1  2   86  101    70 0.809   8.27
 4.19 Intr + 127073 127195  123  1  0  105   46   128 0.999  11.08
 4.20 Intr + 128662 128773  112  0  1  137   52   106 0.999  11.85
 4.21 Intr + 130031 130130  100  0  1   74   39   127 0.996   5.57
 4.22 Intr + 130241 130346  106  2  1  100   93    37 0.910   5.62
 4.23 Intr + 131545 131786  242  0  2   53   70   363 0.995  27.35
 4.24 Term + 136357 136504  148  1  1  114   36   341 0.998  28.87
 4.25 PlyA + 138536 138541    6                               1.05

 5.03 PlyA - 139887 139882    6                               1.05
 5.02 Term - 143110 143094   17  2  2   95   54    23 0.055  -2.00
 5.01 Init - 150419 150347   73  2  1   77   80    70 0.773   6.33
 5.00 Prom - 158113 158074   40                              -3.76

 6.09 PlyA - 158600 158595    6                               1.05
 6.08 Term - 164114 164001  114  2  0   73   50   128 0.863   6.07
 6.07 Intr - 177244 177175   70  0  1  101   25    76 0.037   1.78
 6.06 Intr - 186836 186808   29  2  2   60   69    63 0.006  -1.49
 6.05 Intr - 194220 194141   80  1  2   94   78    39 0.019   2.77
 6.04 Intr - 201210 201163   48  1  0  105  103    23 0.096   4.15
 6.03 Intr - 232338 232257   82  0  1   67   92    14 0.121  -1.09
 6.02 Intr - 235778 235727   52  1  1   89   87    54 0.605   4.31
 6.01 Init - 236222 236179   44  2  2   80   99     1 0.293   0.29

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 100001 100049   49  1  1   67   96    47 0.811   2.60
S.002 Intr + 114769 114962  194  1  2   88   81   238 0.988  22.24


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594f:54158769_54395269|GENSCAN_predicted_peptide_1|95_aa
MSKKHNGFGSQGFVRKWSAPVTCNPDMVFIPSGRYGNKAPSESREQPSPGTDPASTLILD
FSASRTTSILHQSSRLWEVDHVLQQFPDSWNTVFK

>gi568815594f:54158769_54395269|GENSCAN_predicted_CDS_1|285_bp
atgtccaagaaacacaacggatttggctctcagggttttgttcggaaatggtcagctcct
gtgacttgcaatccagacatggtattcatcccctctggaagatacggcaacaaggcacca
tccgaaagcagagagcagccctcgccaggcactgaccctgccagcaccttaatcttggac
ttctcagcctctagaactacatccattcttcaccaatcatccaggctttgggaagtagac
catgtactgcagcaatttcctgactcctggaacaccgtcttcaag

>gi568815594f:54158769_54395269|GENSCAN_predicted_peptide_2|595_aa
MRKTSIDTITAAATTIIQVEETEAQKGVTATVTVVQNPNVSDFYPTLCSAALSVLEAKKS
KIKALAGSLSALTYEPQCPEDDSKQRRTFKWNLRLVKEWPGTAPDFRGQTDLNSSRKVEL
AVELGGRGGEDTKSQLSGKRPQSQRQEERKGLQEGAELLVRKLGTTWNWGNLFAARAPVP
HFAPRIVLRPQDVRKECLEELATHSIFLDEEALPRLPDRRKADQARFDALVRPCFGACSF
GLTQVQLDLVHKIENNANAERRAWGAAASAALRFRARRAGAQGRRSPERLGIAANPGTTK
PPRTWWRWEGERTAQCSSGSRGQKPDSGGGWTVRAQSLPGEVCAQHSRLRCRGPGAWAAG
ELAGEPGKIRGAVAPSSGLRGRIPLSPAPGGRRRYLSGAQRWNPGGPERRLIWVTFPLLR
AASGLLAGSVWAREAPGGREGAEVSGFGLRMGRPCNSMWEKQGSVEEDGSPQQRRLPGSE
DVFPKPRCPGAPAPGDGDDDGDDGEMSPNSPGVPRRFSHFQQQFSYFCLNPAGFQLRSPR
KLKVQPKEGRDWKLTFGVVELRIPRSGVCVATRGRTSLDQHCHLLATRKNYCDPL

>gi568815594f:54158769_54395269|GENSCAN_predicted_CDS_2|1788_bp
atgcgcaaaacctcaatagacactatcactgctgctgccaccactatcatccaagttgag
gaaactgaggcccagaaaggtgtgacagccacagtcacagtagtgcagaaccctaatgtg
tccgacttttatccaacactctgctccgcagcgctgtcggttctagaggctaagaagtcc
aagatcaaggcactggcaggatccctgtctgcactgacatacgagccccagtgtcctgag
gatgactccaaacagcgtcggaccttcaagtggaacctcaggcttgttaaggagtggcct
ggaactgcaccagattttagggggcaaacggacctgaattcttcaaggaaagtagaattg
gcggtggagctggggggcagaggaggagaagacacaaaaagccaactcagtgggaagcgc
cctcaaagccaaaggcaggaagagaggaaaggtctccaggaaggtgccgaacttcttgtg
aggaagttagggacgacttggaactggggaaacttgtttgcagccagagcgccggtcccg
cacttcgctccccgaattgtgctaagacctcaggatgtgcgcaaggagtgcctggaagaa
cttgccactcactccatcttcctggatgaggaggccctgcctcgactccccgacaggcgc
aaggccgaccaggctcgctttgacgccctggtcaggccctgcttcggagcttgcagtttt
gggttgacccaagtgcagctggacctcgttcacaagattgaaaacaatgcaaacgcagag
cgtcgtgcctggggcgcagcggcctctgcagctctgaggttcagagcgcggcgcgcaggg
gcgcaggggcgcaggtccccggagcggctgggcatcgccgccaaccccgggacaaccaag
ccgccgaggacttggtggaggtgggagggagagcggaccgcgcagtgttcctctgggtcc
cggggtcagaagccggacagtggcgggggctggacagtccgagcgcagagcctcccgggc
gaagtctgcgcgcagcactcccggctgcgctgtcggggaccaggagcctgggctgcgggc
gagctagctggcgagccgggtaagattcgcggggctgtcgcgccctctagtgggctccgg
ggacgcatcccgctttccccagccccgggcggtcggcgccgctatctcagtggagcgcag
cgctggaaccccgggggcccggagcggaggctaatctgggtcacctttcccctcctccgg
gcagccagtggactcctcgcaggctctgtgtgggcccgggaggcgccgggtggacgagag
ggggccgaggtctctgggtttggattgagaatgggacgtccttgtaattcaatgtgggag
aagcaggggagtgtggaggaggacgggtccccccagcagcgtcgtcttcccggctccgaa
gacgtcttcccgaagccccgctgccccggcgcaccagctcccggtgatggggatgatgat
ggggatgatggggagatgtccccgaattctcctggggtcccgaggagatttagccatttt
caacagcagttttcctatttctgcttaaaccccgcgggctttcaactgaggtcaccacga
aagctaaaagtacaacctaaggaaggaagagactggaaattaacatttggggtagtggag
ctcagaattcctcgcagcggcgtctgtgtcgcaacccgtggacgcacgtccttggaccaa
cactgccatctgctggccactcgtaagaactactgcgacccgctgtga

>gi568815594f:54158769_54395269|GENSCAN_predicted_peptide_3|109_aa
MGKKQSRKTGNSEKQSASPPPEERSSSPAMEQSWTENDFDELREEGFRRSNYSELQEEIQ
TKGKEVENFEKTLDESITRITNTEKCLKEQMELKAKAQELHEECRSLRS

>gi568815594f:54158769_54395269|GENSCAN_predicted_CDS_3|330_bp
atggggaaaaaacagagcagaaaaactggaaactctgaaaagcagagcgcctctcctcct
ccagaggaacgcagctcctcaccagcaatggaacaaagctggacggagaatgactttgac
gagttgagagaagaaggcttcagacgatcaaactactccgagctacaggaggaaattcaa
accaaaggcaaagaagttgaaaactttgaaaaaactttagacgaatctataactagaata
accaatacagagaagtgcttaaaggagcagatggagctgaaagccaaggctcaagaacta
catgaagaatgcagaagccttaggagctga

>gi568815594f:54158769_54395269|GENSCAN_predicted_peptide_4|1387_aa
MQTTIREYHKHLYANKLENLEEVDKFLDTYTLPRLNQEEVDSLNRPITGSEIVAIISSLP
TKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEGSIILIPKPGRDTTK
KENFRPISLVNIDAKILNKILANRIQQHIKKLIHHDQVGFMPGMQGWFNIPKSINVIQHV
NRTKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLELEKTTLKFMWNQKRARIAKSVLSQK
NKAGGITLPDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEITPHIYNYLIFDKPEKNK
QWGKDSLFNKWPRSPKLSWDIKKKGMHPTYTGLSLILCQLSLPSILPNENEKVVQLNSSF
SLRCFGESEVSWQYPMSEEESSDVEIRNEENNSGLFVTVLEVSSASAAHTGLYTCYYNHT
QTEENELEGRHIYIYVPDPDVAFVPLGMTDYLVIVEDDDSAIIPCRTTDPETPVTLHNSE
GVVPASYDSRQGFNGTFTVGPYICEATVKGKKFQTIPFNVYALKATSELDLEMEALKTVY
KSGETIVVTCAVFNNEVVDLQWTYPGEVKGKGITMLEEIKVPSIKLVYTLTVPEATVKDS
GDYECAARQATREVKEMKKVTISVHEKGFIEIKPTFSQLEAVNLHEVKHFVVEVRAYPPP
RISWLKNNLTLIENLTEITTDVEKIQEIRYRSKLKLIRAKEEDSGHYTIVAQNEDAVKSY
TFELLTQVPSSILDLVDDHHGSTGGQTALFLSRCNNETSWTILANNVSNIITEIHSRDRS
TVEGRVTFAKVEETIAVRCLAKNLLGAENRELKLVAPTLRSELTVAAAVLVLLVIVIISL
IVLVVIWKQKPRYEIRWRVIESISPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRVLGSG
AFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLG
ACTKSGPIYIITEYCFYGDLVNYLHKNRDSFLSHHPEKPKKELDIFGLNPADESTRSYVI
LSFENNGDYMDMKQADTTQYVPMLERKEVSKYSDIQRSLYDRPASYKKKSMLDSEVKNLL
SDDNSEGLTLLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARD
IMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMMVD
STFYNKIKSGYRMAKPDHATSEVYEIMVKCWNSEPEKRPSFYHLSEIVENLLPGQYKKSY
EKIHLDFLKSDHPAVARMRVDSDNAYIGVTYKNEEDKLKDWEGGLDEQRLSADSGYIIPL
PDIDPVPEEEDLGKRNRHSSQTSEESAIETGSSSSTFIKREDETIEDIDMMDDIGIDSSD
LVEDSFL

>gi568815594f:54158769_54395269|GENSCAN_predicted_CDS_4|4164_bp
atgcaaactaccatcagagaataccacaaacacctctatgcaaataaactagaaaatcta
gaagaagtggataaattcctcgacacatacaccctcccaagactaaaccaggaagaagtt
gattctctgaatagaccaataacaggctctgaaattgtggcaataatcagtagcttacca
accaaaaagagtccaggaccagatggattcacagccgaattctaccagaggtacaaggag
gaactggtaccattccttctgaaactattccaatcaatagaaaaagagggaatcctccct
aactcattttatgagggcagcatcatcctgataccaaagccaggcagagacacaaccaaa
aaagagaattttagaccaatatccttggtgaacattgatgcaaaaatcctcaataaaata
ctggcaaacagaatccagcagcacatcaaaaagcttatccaccatgatcaagttggcttc
atgcctgggatgcaaggctggttcaatatacccaaatcaataaatgtaatccagcatgta
aacagaaccaaagacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgac
aaaattcaacaacccttcatgctaaaaactctcaataaattagaattggaaaaaactact
ttaaagttcatgtggaaccaaaaaagagcccgcatcgccaagtcagtcctaagccaaaag
aacaaagctggaggcatcacgctacctgacttcaaactatactacaaagctacagtaacc
aaaacagcatggtactggtaccaaaacagagatatagatcaatggaacagaacagaaccc
tcagaaataacgccgcatatctacaactatctgatctttgacaaacctgagaaaaacaag
caatggggaaaggattctttatttaataaatggcccaggagccccaagttatcttgggac
atcaagaagaaaggaatgcacccaacttatacagggctgagcctaatcctctgccagctt
tcattaccctctatccttccaaatgaaaatgaaaaggttgtgcagctgaattcatccttt
tctctgagatgctttggggagagtgaagtgagctggcagtaccccatgtctgaagaagag
agctccgatgtggaaatcagaaatgaagaaaacaacagcggcctttttgtgacggtcttg
gaagtgagcagtgcctcggcggcccacacagggttgtacacttgctattacaaccacact
cagacagaagagaatgagcttgaaggcaggcacatttacatctatgtgccagacccagat
gtagcctttgtacctctaggaatgacggattatttagtcatcgtggaggatgatgattct
gccattataccttgtcgcacaactgatcccgagactcctgtaaccttacacaacagtgag
ggggtggtacctgcctcctacgacagcagacagggctttaatgggaccttcactgtaggg
ccctatatctgtgaggccaccgtcaaaggaaagaagttccagaccatcccatttaatgtt
tatgctttaaaagcaacatcagagctggatctagaaatggaagctcttaaaaccgtgtat
aagtcaggggaaacgattgtggtcacctgtgctgtttttaacaatgaggtggttgacctt
caatggacttaccctggagaagtgaaaggcaaaggcatcacaatgctggaagaaatcaaa
gtcccatccatcaaattggtgtacactttgacggtccccgaggccacggtgaaagacagt
ggagattacgaatgtgctgcccgccaggctaccagggaggtcaaagaaatgaagaaagtc
actatttctgtccatgagaaaggtttcattgaaatcaaacccaccttcagccagttggaa
gctgtcaacctgcatgaagtcaaacattttgttgtagaggtgcgggcctacccacctccc
aggatatcctggctgaaaaacaatctgactctgattgaaaatctcactgagatcaccact
gatgtggaaaagattcaggaaataaggtatcgaagcaaattaaagctgatccgtgctaag
gaagaagacagtggccattatactattgtagctcaaaatgaagatgctgtgaagagctat
acttttgaactgttaactcaagttccttcatccattctggacttggtcgatgatcaccat
ggctcaactgggggacagacggccctttttctctctagatgtaataatgaaacttcctgg
actattttggccaacaatgtctcaaacatcatcacggagatccactcccgagacaggagt
accgtggagggccgtgtgactttcgccaaagtggaggagaccatcgccgtgcgatgcctg
gctaagaatctccttggagctgagaaccgagagctgaagctggtggctcccaccctgcgt
tctgaactcacggtggctgctgcagtcctggtgctgttggtgattgtgatcatctcactt
attgtcctggttgtcatttggaaacagaaaccgaggtatgaaattcgctggagggtcatt
gaatcaatcagcccagatggacatgaatatatttatgtggacccgatgcagctgccttat
gactcaagatgggagtttccaagagatggactagtgcttggtcgggtcttggggtctgga
gcgtttgggaaggtggttgaaggaacagcctatggattaagccggtcccaacctgtcatg
aaagttgcagtgaagatgctaaaacccacggccagatccagtgaaaaacaagctctcatg
tctgaactgaagataatgactcacctggggccacatttgaacattgtaaacttgctggga
gcctgcaccaagtcaggccccatttacatcatcacagagtattgcttctatggagatttg
gtcaactatttgcataagaatagggatagcttcctgagccaccacccagagaagccaaag
aaagagctggatatctttggattgaaccctgctgatgaaagcacacggagctatgttatt
ttatcttttgaaaacaatggtgactacatggacatgaagcaggctgatactacacagtat
gtccccatgctagaaaggaaagaggtttctaaatattccgacatccagagatcactctat
gatcgtccagcctcatataagaagaaatctatgttagactcagaagtcaaaaacctcctt
tcagatgataactcagaaggccttactttattggatttgttgagcttcacctatcaagtt
gcccgaggaatggagtttttggcttcaaaaaattgtgtccaccgtgatctggctgctcgc
aacgtcctcctggcacaaggaaaaattgtgaagatctgtgactttggcctggccagagac
atcatgcatgattcgaactatgtgtcgaaaggcagtacctttctgcccgtgaagtggatg
gctcctgagagcatctttgacaacctctacaccacactgagtgatgtctggtcttatggc
attctgctctgggagatcttttcccttggtggcaccccttaccccggcatgatggtggat
tctactttctacaataagatcaagagtgggtaccggatggccaagcctgaccacgctacc
agtgaagtctacgagatcatggtgaaatgctggaacagtgagccggagaagagaccctcc
ttttaccacctgagtgagattgtggagaatctgctgcctggacaatataaaaagagttat
gaaaaaattcacctggacttcctgaagagtgaccatcctgctgtggcacgcatgcgtgtg
gactcagacaatgcatacattggtgtcacctacaaaaacgaggaagacaagctgaaggac
tgggagggtggtctggatgagcagagactgagcgctgacagtggctacatcattcctctg
cctgacattgaccctgtccctgaggaggaggacctgggcaagaggaacagacacagctcg
cagacctctgaagagagtgccattgagacgggttccagcagttccaccttcatcaagaga
gaggacgagaccattgaagacatcgacatgatggatgacatcggcatagactcttcagac
ctggtggaagacagcttcctgtaa

>gi568815594f:54158769_54395269|GENSCAN_predicted_peptide_5|29_aa
MDVKVAMKVSGIKAKTGTAEVKLPAPTYE

>gi568815594f:54158769_54395269|GENSCAN_predicted_CDS_5|90_bp
atggatgtgaaggtggccatgaaagtatctggaattaaagcaaagacagggactgcagaa
gtaaagctaccagctcccacctatgagtga

>gi568815594f:54158769_54395269|GENSCAN_predicted_peptide_6|172_aa
MGGGEGNAEEAFSSRLRNEDFKKLSFDISQIITLRNPAGSPEITSAVFYHLLSLSLQPDM
IDLQLLSFHRAYGHSATWMKLEAMIFRETTQTQKDKYCMFSFNFQYYGEEEWKLVQHVSN
QVLLYKVTTIAAQANAQRFHVKNPASSSTLYSFVDKAGGGQIGPQEIWVFED

>gi568815594f:54158769_54395269|GENSCAN_predicted_CDS_6|519_bp
atgggtggtggggaggggaacgctgaggaggccttctcctccagattacggaatgaagac
tttaagaagttgagctttgatatttcacagatcattactctaaggaatcctgctggaagc
ccagaaatcacatctgctgtgttctaccatctgctgtccttatctctccagccagatatg
atagacctccagttactaagttttcacagagcctacggccactcagcaacatggatgaaa
ctggaggccatgatcttcagagaaacaactcagacacagaaagacaaatactgtatgttc
tcatttaacttccagtactatggtgaagaggagtggaaacttgtccagcatgtcagtaac
caggtcttgctctacaaggtgacaaccatcgctgcccaggccaatgctcagagatttcac
gtgaagaatccggcttcttcatccactctctactccttcgtggacaaggcaggtggagga
cagattggcccacaagaaatctgggtgtttgaagattag