GENSCAN 1.0	Date run:  6-Nov-116	Time: 01:04:15

Sequence gi568815579r:42412349_42628374 : 216026 bp : 45.46% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -   6559   6554    6                               1.05
 1.02 Term -  11235  10925  311  1  2   26   42   189 0.247   3.32
 1.01 Init -  14801  13919  883  2  1   78  109   305 0.691  26.22
 1.00 Prom -  15897  15858   40                              -6.76

 2.13 PlyA -  16215  16210    6                               1.05
 2.12 Term -  20830  20657  174  1  0   96   43    90 0.910   3.06
 2.11 Intr -  21508  21428   81  1  0   79   86    47 0.517   3.43
 2.10 Intr -  33216  33052  165  0  0   44   70   100 0.023   3.96
 2.09 Intr -  76794  76738   57  0  0  106   87    30 0.036   3.78
 2.08 Intr -  98572  98541   32  2  2  100  121    30 0.004   5.35
 2.07 Intr -  99280  99228   53  0  2   35   98    16 0.003  -4.15
 2.06 Intr - 100131 100002  130  1  1  104   80    79 0.005   8.45
 2.05 Intr - 106887 106600  288  1  0   86   93   281 0.301  25.62
 2.04 Intr - 109140 108919  222  1  0   97  119   142 0.560  16.30
 2.03 Intr - 109854 109576  279  1  0   61   76   280 0.998  21.55
 2.02 Intr - 115052 114693  360  0  0  110   84   306 0.527  27.59
 2.01 Init - 116026 115963   64  1  1  107   94    20 0.742   3.95
 2.00 Prom - 132150 132111   40                              -4.16

 3.11 PlyA - 132232 132227    6                               1.05
 3.10 Term - 134471 134206  266  0  2  124   40    80 0.216   2.47
 3.09 Intr - 136308 136211   98  2  2  103   24    53 0.204   0.05
 3.08 Intr - 141527 141486   42  1  0  125  105    38 0.335   6.56
 3.07 Intr - 143575 143458  118  2  1  104   74    45 0.180   4.22
 3.06 Intr - 160095 160012   84  1  0  112    0    73 0.011   0.69
 3.05 Intr - 176690 176436  255  0  0  110  119    84 0.772  11.12
 3.04 Intr - 177387 177109  279  1  0   72   65   244 0.941  17.95
 3.03 Intr - 178027 177983   45  2  0  116  108     1 0.902   3.28
 3.02 Intr - 181552 181193  360  2  0   72   78   358 0.859  28.39
 3.01 Init - 182480 182417   64  2  1   98   94    42 0.872   5.16
 3.00 Prom - 186319 186280   40                              -3.46

 4.05 PlyA - 186561 186556    6                               1.05
 4.04 Term - 189631 189438  194  2  2   75   46    91 0.211   1.18
 4.03 Intr - 213703 213449  255  2  0  107   95   205 0.653  20.52
 4.02 Intr - 214099 213952  148  1  1   49   69   -17 0.173  -7.69
 4.01 Intr - 214382 214147  236  0  2   58   75   218 0.418  14.91

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  99953 100098  146  1  2   82   94   159 0.969  15.49
S.002 Term + 101314 101338   25  1  1  144   51    32 0.990   2.80


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815579r:42412349_42628374|GENSCAN_predicted_peptide_1|397_aa
MEPGSKSVSRSDWQPEPHQRPITPLEPGPEKTPIAQPESKTLQGSNTQQKPASNQRPLTQ
QETPAQHDAESQKEPRAQQKSASQEEFLAPQKPAPQQSPYIQRVLLTQQEAASQQGPGLG
KESITQQEPALRQRHVAQPGPGPGEPPPAQQEAESTPAAQAKPGAKREPSAPTESTSQET
PEQSDKQTTPVQGAKSKQGSLTELGFLTKLQELSIQRSALEWKALSEWVTDSESESDVGS
SSDTDSPATMGGMVAQGVKLGFKGKSGYKVMSGYSGTSPHEKTSARNHRHYQDTGPRGWN
WPPREDRGELMELAGGTEPAEAAMAPASKNAKEGSRSHGRRRWRKDKAKGERAETGSSPE
GTSYILRGSGDSVDWPTATGSWGGPRTGPLPLAGTTG

>gi568815579r:42412349_42628374|GENSCAN_predicted_CDS_1|1194_bp
atggagccaggttctaagtcagtgtctaggtcagactggcaacctgaaccacaccagagg
cctataaccccgctagagcctgggccagaaaagacacccatagcccagccagaatcgaag
actctgcagggatccaatacccaacagaagcctgcttcaaaccaaagacccctcacccag
caggagacccctgcacaacatgatgctgaatcccagaaggaacctagagcccaacaaaaa
tctgcttcacaagaggaatttcttgccccacagaagcccgcaccacagcaatcaccttac
atccaaagggtgctgctcactcaacaggaagctgcctcccagcagggacctgggctagga
aaagaatctataactcaacaggagccagcattgagacaaagacatgtagcccagccaggg
cctgggccaggagagccacctccagctcaacaagaagctgaatcaacacctgcggcccag
gctaaacctggagccaaaagggagccatctgccccgactgaatctacgtcccaagagaca
cctgaacagtcagacaagcaaacaacgccagtccagggagccaaatccaagcagggatct
ttgacagagctgggatttctaacaaaacttcaggaactatccatacagcgatcagcccta
gagtggaaggcactttctgagtgggtcacagattctgagtcagaatcagatgtgggatca
tcttcagacacagattctccagccacgatgggtggaatggtggcccagggagtgaagcta
ggcttcaaaggaaaatctggttataaagtgatgtcaggatacagtgggacgtcgccacat
gagaaaaccagtgctcggaatcacagacactaccaggatacagggcctcgcggctggaat
tggcccccgcgggaggaccgcggggaattgatggagttggccgggggaacggagcccgcc
gaggccgctatggccccggcctcgaagaatgccaaagagggctcaaggagccacggtcgc
cggcggtggcgaaaagacaaggccaaaggtgagcgcgcggagaccggcagcagcccggaa
ggaacctcgtacatcctacggggcagtggggacagcgtggactggcccactgccacaggg
agttgggggggtccgcggactggcccattgccgcttgcggggacaacgggatga

>gi568815579r:42412349_42628374|GENSCAN_predicted_peptide_2|634_aa
MGHLSAPLHRVRVPWQGLLLTASLLTFWNPPTTAQLTTESMPFNVAEGKEVLLLVHNLPQ
QLFGYSWYKGERVDGNRQIVGYAIGTQQATPGPANSGRETIYPNASLLIQNVTQNDTGFY
TLQVIKSDLVNEEATGQFHVYPELPKPSISSNNSNPVEDKDAVAFTCEPETQDTTYLWWI
NNQSLPVSPRLQLSNGNRTLTLLSVTRNDTGPYECEIQNPVSANRSDPVTLNVTYTYYRP
GANLSLSCYAASNPPAQYSWLINGTFQQSTQELFIPNITVNNSGSYTCHANNSVTGCNRT
TVKTIIVTELSPVVAKPQIKASKTTVTGDKDSVNLTCSTNDTGISIRWFFKNQSLPSSER
MKLSQGNTTLSINPVKREDAGTYWCEVFNPISKNQSDPIMLNVNYNALPQENGLSPGAIA
GIVIGVVALVALIAVALACFLHFGKTGRASDQRDLTEHKPSVSNHTQDHSNDPPNKDTIG
DNGSFMKALTGMACQLKVKKRIQISLMVLCAVTAGPGMSSRLIQGAQGSHFTLNVLSPIG
AHHVYTCSSQGSPEATGTEARLLGDGSRKAAKNVSAKWKCKAQKMAIKALSYSLLSNVLT
LPSKQQCCCSRLVPESPEKKIHDSVWAAKEAVPL

>gi568815579r:42412349_42628374|GENSCAN_predicted_CDS_2|1905_bp
atggggcacctctcagccccacttcacagagtgcgtgtaccctggcaggggcttctgctc
acagcctcacttctaaccttctggaacccgcccaccactgcccagctcactactgaatcc
atgccattcaatgttgcagaggggaaggaggttcttctccttgtccacaatctgccccag
caactttttggctacagctggtacaaaggggaaagagtggatggcaaccgtcaaattgta
ggatatgcaataggaactcaacaagctaccccagggcccgcaaacagcggtcgagagaca
atataccccaatgcatccctgctgatccagaacgtcacccagaatgacacaggattctac
accctacaagtcataaagtcagatcttgtgaatgaagaagcaactggacagttccatgta
tacccggagctgcccaagccctccatctccagcaacaactccaaccctgtggaggacaag
gatgctgtggccttcacctgtgaacctgagactcaggacacaacctacctgtggtggata
aacaatcagagcctcccggtcagtcccaggctgcagctgtccaatggcaacaggaccctc
actctactcagtgtcacaaggaatgacacaggaccctatgagtgtgaaatacagaaccca
gtgagtgcgaaccgcagtgacccagtcaccttgaatgtcacctacacctattaccgtcca
ggggcaaacctcagcctctcctgctatgcagcctctaacccacctgcacagtactcctgg
cttatcaatggaacattccagcaaagcacacaagagctctttatccctaacatcactgtg
aataatagtggatcctatacctgccacgccaataactcagtcactggctgcaacaggacc
acagtcaagacgatcatagtcactgagctaagtccagtagtagcaaagccccaaatcaaa
gccagcaagaccacagtcacaggagataaggactctgtgaacctgacctgctccacaaat
gacactggaatctccatccgttggttcttcaaaaaccagagtctcccgtcctcggagagg
atgaagctgtcccagggcaacaccaccctcagcataaaccctgtcaagagggaggatgct
gggacgtattggtgtgaggtcttcaacccaatcagtaagaaccaaagcgaccccatcatg
ctgaacgtaaactataatgctctaccacaagaaaatggcctctcacctggggccattgct
ggcattgtgattggagtagtggccctggttgctctgatagcagtagccctggcatgtttt
ctgcatttcgggaagaccggcagggcaagcgaccagcgtgatctcacagagcacaaaccc
tcagtctccaaccacactcaggaccactccaatgacccacctaacaaggacaccattgga
gacaatggttcttttatgaaggctttgactggaatggcatgccagctcaaagtgaaaaag
agaatacaaatatccctgatggtcctttgtgcggtcacagctggacccggtatgtcctcc
cggttaatccagggtgctcagggctcccatttcactctgaacgtcctctctcctatcgga
gctcaccacgtctacacctgcagcagccaggggtcgccagaggccacagggaccgaggcc
aggcttctaggagatggctccaggaaggcggccaagaatgtgagtgcaaagtggaaatgc
aaggcacagaagatggcgattaaagctctgtcctactccctcctatcaaatgtattaact
ctcccatctaagcagcaatgctgttgttccagattggttcctgagagccccgagaagaaa
attcatgacagtgtctgggctgccaaagaagcagtgcccctgtga

>gi568815579r:42412349_42628374|GENSCAN_predicted_peptide_3|536_aa
MGPISAPSCRWRIPWQGLLLTASLFTFWNPPTTAQLTIEAVPSNAAEGKEVLLLVHNLPQ
DPRGYNWYKGETVDANRRIIGYVISNQQITPGPAYSNRETIYPNASLLMRNVTRNDTGSY
TLQVIKLNLMSEEVTGQFSVHHHSLDSALSLEVTDSTETPKPSISSNNSNPVEDKDAVAF
TCEPETQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLLSVTRNDVGPYECEIQNPASANF
SDPVTLNVLYGPDAPTISPSDTYYHAGVNLNLSCHAASNPPSQYSWSVNGTFQQYTQKLF
IPNITTKNSGSYACHTTNSATGRNRTTVRMITVSGTLVELEDIMLSKLTQKQKNKYCMFS
LIKKNAPGLPVGAFTGIVTRVLVGVAPVATLACFLLLVRTGRPRYPTPGQPLPSMRHHSR
QHMDGKRLREKLPVLVRSEAAIKNCWRLGAHISLSTCLTAKAISHLLPSTLPNPVHGGDG
PSWNTHHSLSAFSGNHRFYRGHLWNQNSWKDEQRELLRTSWGSWHLVHHMDIINST

>gi568815579r:42412349_42628374|GENSCAN_predicted_CDS_3|1611_bp
atggggcccatctcagccccttcctgcagatggcgcatcccctggcaggggctcctgctc
acagcctcacttttcaccttctggaacccgcccaccactgctcagctcactattgaagct
gtgccatccaatgctgcagaggggaaggaggttcttctacttgtccacaatctgccccag
gaccctcgtggctacaactggtacaaaggggaaacagtggatgccaaccgtcgaattata
ggatatgtaatatcaaatcaacagattaccccagggcctgcatacagcaatcgagagaca
atataccccaatgcatccctgctgatgcggaacgtcaccagaaatgacacaggatcctac
accctacaagtcataaagctaaatcttatgagtgaagaagtaactggccagttcagcgta
catcatcattccttggactctgctctatctttagaggtcactgactcaacggagactccc
aagccctccatctccagcaacaactccaaccccgtggaggacaaggatgctgtggccttc
acctgtgaacctgagactcagaacacaacctacctgtggtgggtaaatggtcagagtctc
ccggtcagtcccaggctgcagctgtccaatggcaacaggaccctcactctactcagtgtc
acaaggaatgacgtaggaccctatgaatgtgaaatacagaacccagcgagtgcaaacttc
agtgacccagtcaccctgaatgtcctctatggcccagatgcccccaccatttccccttca
gacacctattaccatgcaggggtaaatctcaacctctcctgccatgcggcctctaatcca
ccctcacagtattcttggtctgtcaatggcacattccagcaatacacacaaaagctcttt
atccccaacatcactacaaagaacagcggatcctatgcctgccacaccactaactcagcc
actggccgcaacaggaccacagtcaggatgatcacagtctctggaacattggtggagcta
gaggacattatgctcagcaaactaacgcagaaacagaaaaacaaatactgcatgttctca
cttataaaaaaaaatgccccaggccttcctgtgggggccttcactggcatcgtgaccagg
gttctggtcggggtggcaccggtggccaccctggcatgtttcctgctcctcgtcaggact
ggaaggccccgctacccgaccccaggacagccgctcccatctatgaggcatcacagcagg
cagcacatggatggaaagagactgcgggaaaagctgcctgtattagtccgttccgaagct
gctataaagaactgctggagactgggagcccacatcagcctgtccacctgccttacagcc
aaagccatcagccacttgctcccttccaccctccccaaccctgtacatggaggtgacggc
ccctcctggaacacccaccactcactgtcagccttcagtggtaatcacaggttctacagg
ggtcacctgtggaaccagaactcttggaaggacgagcagagggagctgctcaggacatct
tggggctcctggcatctggtccaccacatggacataatcaatagcacttag

>gi568815579r:42412349_42628374|GENSCAN_predicted_peptide_4|277_aa
XKLSKPFVTISNSNPVENEDTAALTCETEIQNTTYLWWVNGQSLPVSPRLKLSNDNRTLT
LPRVTRKDAGTYECEIRNLYLLFLCSPGCQPKSTWPEARPLSPSQVQVQRPLLLGTQAGH
DFLPQANLDGPDDPNISPSYSYYHPGENLNLSCNTASNPPPQYSWQINGKFQKSAQELFI
SKITKKNSGIYICFVRNSATDSRCFTIKKITVTGISVQGSEEMAEASEPKDGERGSNPGA
APWNESRWGHTENVVQEGIPRNGQERSRGHRLCGSAA

>gi568815579r:42412349_42628374|GENSCAN_predicted_CDS_4|834_bp
ncgaaactatccaagcccttcgtcaccatcagcaactccaaccccgtggagaatgaggat
actgcggccttaacctgtgaaactgagattcagaacacaacttacctgtggtgggtaaat
ggtcagagcctcccggtcagtcccaggctgaagctgtccaatgacaacaggaccctcact
ctacccagagtcacaaggaaggacgcaggaacatatgaatgtgaaatccggaatctatat
cttctgttcctctgtagcccaggctgccagcccaaatccacatggccagaggccaggcct
ctcagtccctctcaggtccaagtacagagacctttactcctgggcacccaggctggccat
gacttcctgccccaggcaaacctggatggcccagacgaccccaacatttccccctcttac
tcctattaccatccaggggaaaacctcaacctctcctgcaacacagcctctaacccaccc
ccacagtattcttggcagattaatgggaagttccaaaaatcagcacaagagctctttatc
tccaaaatcactaaaaagaatagtggaatctacatctgtttcgttcgcaactcagccact
gacagcaggtgtttcacgatcaagaagatcacagtcactgggatcagtgttcagggctca
gaagaaatggcagaggccagtgagcccaaagatggtgagaggggcagcaacccaggggca
gctccctggaacgagagcaggtggggccacacggagaacgtggtgcaggaaggaataccc
aggaatgggcaggagaggagtcgaggacacaggctctgtgggtctgcagcctag