GENSCAN 1.0	Date run:  6-Nov-116	Time: 19:59:23

Sequence gi568815593r:135234979_135489093 : 254115 bp : 45.55% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    954   1080  127  2  1   49   44   154 0.411   7.43
 1.02 Term +   3995   4167  173  0  2  103   53    81 0.775   4.09
 1.03 PlyA +   4603   4608    6                              -1.75

 2.07 PlyA -   5940   5935    6                               1.05
 2.06 Term -   9787   9712   76  0  1   78   54    78 0.192   0.71
 2.05 Intr -  10841  10736  106  0  1   53   76    95 0.173   4.07
 2.04 Intr -  20057  20032   26  1  2  117   98    20 0.176   3.57
 2.03 Intr -  28658  28541  118  0  1   60   63   105 0.195   4.72
 2.02 Intr -  31847  31821   27  0  0  108   63    37 0.235   1.29
 2.01 Init -  47309  47195  115  2  1   93   50    62 0.120   3.27
 2.00 Prom -  49171  49132   40                              -5.16

 3.08 PlyA -  49265  49260    6                               1.05
 3.07 Term -  50207  50035  173  0  2   70   42   101 0.194   1.69
 3.06 Intr -  72441  72126  316  0  1   41   17   259 0.092   9.74
 3.05 Intr -  73051  72934  118  0  1   58   82    60 0.239   2.87
 3.04 Intr -  78819  78510  310  1  1   56  105    97 0.087   3.57
 3.03 Intr -  86401  86255  147  2  0   71   78    43 0.361   1.81
 3.02 Intr -  89481  89286  196  0  1  118   26   110 0.292   6.79
 3.01 Init -  90044  90015   30  2  0  104   42    65 0.676   3.10
 3.00 Prom -  91034  90995   40                              -5.56

 4.13 PlyA -  94380  94375    6                               1.05
 4.12 Term - 100163  99998  166  1  1  117   44   270 0.998  22.89
 4.11 Intr - 100586 100228  359  2  2  -47   81   201 0.178  -0.05
 4.10 Intr - 107657 107540  118  1  1   74   91   108 0.991  10.17
 4.09 Intr - 108456 108282  175  1  1   65   91   196 0.985  16.60
 4.08 Intr - 111079 110990   90  2  0  107   78   165 0.999  17.37
 4.07 Intr - 118067 117968  100  2  1  109   59   103 0.641   9.18
 4.06 Intr - 125629 125519  111  1  0   29  102   156 0.909  11.68
 4.05 Intr - 134625 134428  198  0  0   48   95   202 0.995  16.45
 4.04 Intr - 135164 135058  107  0  2  113   80   189 0.887  20.53
 4.03 Intr - 154125 153944  182  2  2   75  109   262 0.592  26.51
 4.02 Intr - 170385 170325   61  1  1   71   82    44 0.021  -0.11
 4.01 Init - 180395 180263  133  2  1   78   47    61 0.257   1.30
 4.00 Prom - 180519 180480   40                              -2.46

 5.00 Prom + 181459 181498   40                              -1.66
 5.01 Init + 192914 193011   98  1  2  102   77    24 0.259   2.74
 5.02 Intr + 200733 200783   51  0  0   71   85    87 0.181   4.72
 5.03 Term + 202631 202766  136  2  1  104   49    41 0.368  -0.71
 5.04 PlyA + 205630 205635    6                               1.05

 6.09 PlyA - 207005 207000    6                               1.05
 6.08 Term - 210917 210811  107  0  2   52   41    89 0.285  -0.83
 6.07 Intr - 211552 211468   85  1  1   85  100    32 0.808   3.49
 6.06 Intr - 213251 213134  118  1  1   84   64    84 0.848   6.07
 6.05 Intr - 214971 214480  492  2  0   71   31   490 0.837  33.71
 6.04 Intr - 226656 226513  144  2  0   57   86    84 0.740   4.50
 6.03 Intr - 231506 231141  366  1  0   87   97   293 0.938  24.36
 6.02 Intr - 231850 231697  154  2  1   71   -3   142 0.858   2.53
 6.01 Init - 237373 237235  139  1  1   71   80   142 0.854  12.00
 6.00 Prom - 244064 244025   40                              -6.56

 7.03 PlyA - 245962 245957    6                               1.05
 7.02 Term - 247534 247382  153  1  0  101   41   117 0.800   6.22
 7.01 Intr - 252046 251946  101  2  2   98   98   -15 0.078   0.33

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 147917 148015   99  1  0   89   86    83 0.849   8.46


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593r:135234979_135489093|GENSCAN_predicted_peptide_1|99_aa
MMLMLLVQGPHLESTDREQTQTVPGFAKNDCGEKVRHKAFTKGPHFAIQEALWVSVVKLA
HDGCPIDIHWMKECNLPGALEPLAIINLLLKGSSPQLPA

>gi568815593r:135234979_135489093|GENSCAN_predicted_CDS_1|300_bp
atgatgctgatgttgctggtccagggaccacaccttgagagcactgatcgagagcaaacg
cagaccgtgccaggatttgccaagaatgactgtggagagaaagtgaggcacaaagccttc
actaaaggtccacactttgctatccaggaggccctatgggttagtgtggtgaagctggca
catgatggatgtccaatagatattcactggatgaaggaatgcaatttaccaggtgcccta
gagcctttggcaataattaatcttctcttaaaaggatcttccccacaacttcctgcctga

>gi568815593r:135234979_135489093|GENSCAN_predicted_peptide_2|155_aa
MEYYAATTKNEIMSFAATLMQLETIFLSKLMQEQKTKYHGYYHQGLGSKQESFAPNPSRA
KPNESHVHISEASGRVSLGQAHAEESGSLHVELSHSRNYQLPHTPEKTEINTQRMLELSE
VPEPRPGRDEGAATFTTENPLGLTKHLPLRAITGD

>gi568815593r:135234979_135489093|GENSCAN_predicted_CDS_2|468_bp
atggagtattatgcagccacaacaaagaatgaaatcatgtcctttgcagcaacactgatg
cagctggagacaatattcctaagcaaattaatgcaggaacagaaaaccaaataccacgga
tactaccaccagggtctgggaagcaagcaggagagctttgctccaaatcctagcagagcc
aagccaaatgaatcccacgtccacatcagcgaggcctctggccgggtctccctgggccaa
gcccacgcggaggagagcggctccttgcatgtggagcttagtcacagcaggaactatcaa
ctcccccacacccctgagaaaactgagatcaacacgcagcgaatgctggagctgagtgag
gtgcctgagccaagacctggaagagatgaaggagcagccaccttcacaacagagaaccct
ttggggctgaccaaacacttgcccttgcgggccatcacgggagactga

>gi568815593r:135234979_135489093|GENSCAN_predicted_peptide_3|429_aa
MAHMLLLNAMATPGPKSPGRMIAELIWPEYCTQDISPTDTCLFRNPKRQAAQQARPNIPG
HGNSLTLIPQRATWASVIPKETDAEALQVVGQPAGSKRGTRPPQKEHLGTVAWVRQRGLE
GGSSEGVNSHINLLKLMQKKHLQEKKLKVPLNQMWLQVDNMECNSQAILPLQDVLGAKKQ
ATRSLNSPKNCHNFHALKAHSSSSQDTSVRASDASSSKRVQTGAAVRRHRVKRSLDISSM
YYDCSSVSSLGTPSGLSTFTWIDQGPQVLGWAYVLHIVSACRLRHRHHRHHYCYFTGKGT
APKQLAQGHTRRKRYNLESALVCLTLRPQPLPALTSCLLGVQTVVVSVTQALAIVPDDPP
ISVSKAVLNTTIEIQKIPRDYSKQLYAHELKTPEEMDKILETQNLLRLNQEEIEALNRQI
SSSEIKSVI

>gi568815593r:135234979_135489093|GENSCAN_predicted_CDS_3|1290_bp
atggcccacatgctcctgctcaacgccatggccaccccaggacccaagtcaccagggagg
atgattgctgagctcatctggcctgagtactgcacacaggacatttctcccacagacacc
tgcttgtttagaaaccccaaacgccaggcggcccagcaggcccggcccaatattcccggg
cacgggaactctctcaccctcataccccagagggccacatgggccagtgtaattccaaag
gagacagatgctgaggcactgcaggtggttgggcagccagctggcagcaagagggggacc
aggcctccacagaaagagcacttaggaacagtggcctgggtacggcagcggggcctggag
ggaggcagctctgagggtgtgaattctcacattaacctgctgaagttaatgcagaagaag
cacctccaagaaaagaaactgaaagtccccctaaaccaaatgtggttacaagttgataac
atggaatgcaactctcaggcaatcttacctcttcaggatgttttaggggccaagaaacag
gccacaaggtctttgaatagcccaaaaaactgtcacaacttccatgcactgaaagctcat
tcctcttcctcacaagacacctccgtgagagccagtgatgcttcctctagcaagcgggtg
cagacaggagcagcggtgagaaggcacagggtgaagcgctccctagacatcagctcaatg
tattatgattgctcctcagtgtccagcctgggcacaccatcagggctcagcaccttcacc
tggattgaccagggcccccaggtccttggttgggcttacgtgctccacattgtgagtgcc
tgtcgtcttcgtcatcgtcatcatcgtcatcactactgctatttcacaggtaaaggcact
gcgcctaagcaacttgctcaaggtcacacaagaagaaaacggtacaatctagagtcggcg
ctggtctgtttgacactgaggcctcaacccttgcccgccctcacatcctgcctccttggt
gttcagactgttgtggtcagtgtgacacaagccctggccattgttccagatgaccctcca
atatccgtcagcaaagcagtcctcaataccaccatagaaatacaaaagatccccagagac
tactctaaacaactctatgcacatgaattaaaaactccagaggaaatggataaaatcctg
gaaacacagaatctcctgagattgaatcaagaggagattgaagccctgaacagacaaata
tcaagttctgaaattaaatcagtaatttaa

>gi568815593r:135234979_135489093|GENSCAN_predicted_peptide_4|599_aa
MEYYAAIKKDEFMSFVGTWMKLETIILSKLLQGQKTKDHMFSLIDSYVEALTSNVMVIGD
GAFRRATAMSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAV
LEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPE
LLAKKRGSKGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASAD
STTEGTPADGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNT
LEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEK
TVKNCLALADDKKLKSIAFPSIGSGRKSPGRLTKVFTTNTVAPKTYTYPEDHHRRSLVFR
QLMMQVSAFPENLQPSPGADIKSLGYGSGTVLVKGIMEKENQELTLYFGGLMHTTKHYSV
CWLLPSLKAHSTSFCRCQLSAQLSVPHPIFWALGFPTLAYKQTRGSTDTDPTQGKLQHRG
RWPVRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN

>gi568815593r:135234979_135489093|GENSCAN_predicted_CDS_4|1800_bp
atggaatactatgcagccataaaaaaggatgagttcatgtcctttgtagggacatggatg
aagctggaaaccatcattctgagcaaactattgcaaggacagaaaaccaaagaccacatg
ttctcactcatagattcatatgttgaagctctaacctccaatgtgatggtaattggagat
ggagcctttaggagggccaccgccatgtcgagccgcggtgggaagaagaagtccaccaag
acgtccaggtctgccaaagcaggagtcatctttcccgtggggcggatgctgcggtacatc
aagaaaggccaccccaagtacaggattggagtgggggcacccgtgtacatggccgccgtc
ctggaatacctgacagcggagattctggagctggctggcaatgcagcgagagacaacaag
aagggacgggtcacaccccggcacatcctgctggctgtggccaatgatgaagagctgaat
cagctgctaaaaggagtcaccatagccagtgggggtgtgttacccaacatccaccccgag
ttgctagcgaagaagcggggatccaaaggaaagttggaagccatcatcacaccaccccca
gccaaaaaggccaagtctccatcccagaagaagcctgtatctaaaaaagcaggaggcaag
aaaggggcccggaaatccaagaagaagcagggtgaagtcagtaaggcagccagcgccgac
agcacaaccgagggcacacctgccgacggcttcacagtcctctccaccaagagcctcttc
cttggccagaagctgaaccttattcacagtgaaatcagtaatttagccggctttgaggtg
gaggccataatcaatcctaccaatgctgacattgaccttaaagatgacctaggaaacacg
ctggagaagaaaggtggcaaggagtttgtggaagctgtcctggaactccggaaaaagaac
gggcccttggaagtagctggagctgctgtcagcgcaggccatggcctgcctgccaagttt
gtgatccactgtaatagtccagtttggggtgcagacaagtgtgaagaacttctggaaaag
acagtgaaaaactgcttggccctggctgatgataagaagctgaaatccattgcatttcca
tccatcggcagcggcagaaaatccccaggtagactcaccaaggtcttcacgaccaacaca
gttgcccctaagacatacacatacccggaggaccaccacaggagaagtctagtttttcga
cagctgatgatgcaggtcagtgccttcccagagaacctgcagccatcccctggggctgac
atcaagagcctgggctatggctcaggcactgtgctagtcaaaggtatcatggaaaaagaa
aatcaggagcttacactgtacttcgggggcttaatgcacaccacaaaacactattctgtt
tgctggctactgccttctctaaaagcacatagcacatccttctgcaggtgccagctctct
gcccagttgtctgtcccccatcccatcttctgggcactgggctttcccacactggcgtac
aagcagacacggggctcaacagacaccgacccaacacaaggcaagctgcagcacagaggg
aggtggcctgtaaggaacggttttccaaagcagacagcagctcagctgattctgaaggcc
atctccagttacttcgtgtctacaatgtcctcttccatcaaaacggtgtacttcgtgctt
tttgacagcgagagtataggcatctatgtgcaggaaatggccaagctggacgccaactag

>gi568815593r:135234979_135489093|GENSCAN_predicted_peptide_5|94_aa
MALPQTVSTQLVVSLFGLVQVFVCSERLPELVSGLLVAPGPDLEISIALRNYETVTHTPF
AFAAPLVAIGMVPSGTEPAVTHFPVPQAPASTIR

>gi568815593r:135234979_135489093|GENSCAN_predicted_CDS_5|285_bp
atggctctgccacaaacagtttccacccaactggtggtcagcctttttggactagtccag
gtttttgtgtgctctgagaggctgccagaacttgtaagtgggctgctggtggcaccaggg
cctgacctggagattagcatcgccctgaggaattatgagacagtaacgcacactcctttt
gcatttgcggctcctcttgtggccatcggtatggttccttcagggactgagcctgctgtg
actcacttcccagtcccccaggccccagcaagcaccatcagatag

>gi568815593r:135234979_135489093|GENSCAN_predicted_peptide_6|534_aa
MTACKIETTDLVELGPGVLEALIGKKARAGKETVKPMTGQFLQLSPEPRGATGKNKSPGN
DPAAAIATAGAAATAGPGSPCSLQNALIYSHSFLEHHLKAEHPAHRTDPGTQQVLHKRLL
NAGLEQCRNSSYSEIAGASRGVPHRRRRRIQGVEGAGERVQSAIYRQFVGLAGKALALRR
DGAPQTALFATLLRIHSLSNRSAITSQSPVNFAAYLRRERSPLGQREEENAFYIMVVAMW
KRHISLNIRFRMKTHVCKAYVKHVMHERTSSMEKPLTVLRVSLYHPTLGPSAFANVPPRL
QHDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGL
TLRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWE
GISQGQPPPGSGCQQFLFSAQKDDRFAPRASYKEVQLHSQALSIFSIRKTELEPSGWLQG
LVFALDITIPHLLRQPEQAGILTLAFLCFSKNVNLAKLSVRDTGSPRGRLANAP

>gi568815593r:135234979_135489093|GENSCAN_predicted_CDS_6|1605_bp
atgacggcctgcaagattgaaacgactgaccttgttgaattgggacctggcgttttggag
gctctgataggcaagaaggccagagcaggcaaggaaactgtgaagccaatgactggccag
tttctacagctctcgccagagcctagaggtgcaaccggaaagaacaagtcccctggaaac
gaccccgctgctgccatcgccactgctggtgctgctgctacggcaggccctggctctcca
tgcagtctccagaatgccctcatctactcccattcatttcttgagcaccacctgaaggct
gaacacccagcacacaggacagaccctggtactcagcaggtgctgcataagcgtctgtta
aatgcaggactggagcagtgcagaaacagctcttactctgaaatcgcaggcgcttcccgg
ggagtcccgcaccggcgcagacggcggatccagggcgtggagggggccggggaacgggtt
cagagtgccatctaccggcagttcgtcggactggcaggaaaggccttggccctgcggcgg
gatggagccccccagactgcgctgtttgctacgctgctccggatccattcactctccaac
cgctctgcaatcacttcgcaatcaccagtaaactttgccgcctacttgagaagagaaaga
tcccccctggggcagagggaggaggaaaatgctttttatattatggtagtggccatgtgg
aaaagacatatttccctcaacattcgattccgaatgaaaacgcacgtttgtaaagcatat
gtgaaacatgtcatgcacgaaaggacttcttccatggagaagcccctcaccgtcctgcga
gtgagcctgtaccatcccacgctgggcccatctgcctttgccaatgtcccaccacggctg
cagcatgataccagccctctgcttctcggacgggggcaggacgcccacctccagctgcag
ctccctcgcctctcccgccgtcacctgtccctggagccctacctggagaaaggcagtgcc
ctgctggccttctgcctcaaggccctgagccgcaagggctgtgtgtgggtcaatgggctg
acgctgaggtacctggagcaggtccccctgagcaccgtcaacagggtctccttctcaggc
atccagatgctggttcgcgtagaagaaggcacatccctggaggcttttgtctgctatttc
catgtcagcccttcacccctgatttacagacctgaggctgaggaaactgacgaatgggaa
ggcatctcccaggggcagcctccccctggttcaggctgtcaacaatttctgttttctgcc
caaaaggatgatcgttttgcacccagggcaagctacaaggaggtccaacttcactcacag
gccctgagcatcttctccatcaggaaaacagagctggaaccgtcaggctggcttcagggc
ctggtcttcgcacttgatatcactatccctcacctgctcagacagccagagcaggcgggt
attttaaccctcgcattcctctgcttttccaagaatgtgaatcttgccaagctgtccgtg
agagacacgggctcccctcgagggagacttgcaaatgctccataa

>gi568815593r:135234979_135489093|GENSCAN_predicted_peptide_7|84_aa
XTWVFLQPLHPSSRMKVGTAFCPYGAPCPRPKVRLSRDDDSDDSNSHIDLGSLPLHPALP
LKISVSDQTTSSHPEELITIAGPK

>gi568815593r:135234979_135489093|GENSCAN_predicted_CDS_7|255_bp
nggacatgggtgttccttcagcccctccacccttcttcacggatgaaggtaggcacagcc
ttctgcccttatggagcaccgtgcccaaggcctaaggtcaggctgagcagagatgatgac
agtgatgatagtaacagccacattgacctaggcagtcttcccctccacccggccttgcct
ctgaagatctcagtatctgatcagacaaccagttctcaccctgaagagctgatcacaatt
gcaggccccaagtga