GENSCAN 1.0	Date run:  5-Nov-116	Time: 23:03:36

Sequence gi568815586f:27680331_27898163 : 217833 bp : 40.68% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1216   1366  151  1  1   65   57   178 0.895  11.64
 1.02 Intr +   2057   2168  112  1  1   64   57   136 0.999   7.13
 1.03 Intr +   2285   2373   89  0  2   82   81   113 0.999   8.77
 1.04 Intr +   7055   7177  123  1  0  123   57    80 0.984   8.26
 1.05 Intr +   7968   8093  126  2  0   56   58   141 0.995   7.86
 1.06 Intr +   8685   8873  189  2  0  107   81   136 0.996  13.66
 1.07 Intr +  11419  11598  180  0  0   53   99   233 0.987  20.04
 1.08 Intr +  12261  12326   66  2  0   83  113    44 0.959   4.58
 1.09 Term +  12466  12552   87  0  0  125   47   109 0.999   7.18
 1.10 PlyA +  12726  12731    6                              -0.45

 2.00 Prom +  15195  15234   40                              -8.65
 2.01 Init +  16233  16913  681  2  0   78   64   575 0.268  49.26
 2.02 Intr +  30418  30625  208  0  1   55   66   209 0.830  13.13
 2.03 Intr +  31065  31174  110  1  2   52   76    78 0.394   2.08
 2.04 Intr +  32102  32245  144  1  0   41   98    50 0.283   0.86
 2.05 Intr +  35961  36128  168  2  0   50  116   146 0.434  12.82
 2.06 Intr +  39478  39538   61  0  1   52  115    30 0.996  -0.51
 2.07 Intr +  43717  43856  140  2  2   70   52   186 0.950  12.46
 2.08 Intr +  55117  55226  110  0  2   77   63    96 0.612   4.16
 2.09 Intr +  57209  57278   70  2  1  109  106   -13 0.415   0.87
 2.10 Term +  74851  75120  270  0  0  107   38   287 0.971  20.10
 2.11 PlyA +  75944  75949    6                               1.05

 3.06 PlyA -  75967  75962    6                               1.05
 3.05 Term -  83066  82408  659  0  2  114   39   282 0.948  19.02
 3.04 Intr -  86469  86335  135  1  0   85   47    89 0.910   4.12
 3.03 Intr -  89281  89147  135  2  0   33   67    91 0.536   1.12
 3.02 Intr -  90854  90718  137  1  2   71  115    79 0.694   8.19
 3.01 Init -  97098  97022   77  0  2   54   40    86 0.594   1.01
 3.00 Prom -  97335  97296   40                              -3.85

 4.00 Prom +  98166  98205   40                             -13.40
 4.01 Init + 100001 100872  872  1  2   85   99  1117 0.805 106.56
 4.02 Intr + 111378 111571  194  0  2  121  107   176 0.964  21.01
 4.03 Term + 117385 117836  452  2  2  111   42   530 0.913  45.06
 4.04 PlyA + 117857 117862    6                              -0.45

 5.06 PlyA - 118529 118524    6                               1.05
 5.05 Term - 119210 119073  138  2  0  136   38    28 0.130  -0.42
 5.04 Intr - 123460 123317  144  1  0   86   40    91 0.372   3.66
 5.03 Intr - 123955 123868   88  0  1   21   44   101 0.252  -1.95
 5.02 Intr - 124083 124021   63  2  0   11   59   144 0.059   0.71
 5.01 Init - 134068 133875  194  1  2   62   90   152 0.479  11.29
 5.00 Prom - 139473 139434   40                              -7.65

 6.04 PlyA - 140286 140281    6                               1.05
 6.03 Term - 144543 144428  116  1  2   52   55   130 0.661   3.85
 6.02 Intr - 149525 149408  118  2  1   49   92    61 0.082   1.72
 6.01 Init - 158195 157848  348  2  0   50   60   144 0.083   5.03
 6.00 Prom - 158347 158308   40                              -5.55

 7.05 PlyA - 158933 158928    6                               1.05
 7.04 Term - 163528 163373  156  1  0   44   55   152 0.449   4.45
 7.03 Intr - 170835 170709  127  2  1   54   53   106 0.755   3.46
 7.02 Intr - 197496 197352  145  1  1  119   43    62 0.003   3.22
 7.01 Init - 214169 214115   55  2  1   76   59    64 0.335   3.80

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 173090 172975  116  2  2   67   43   103 0.836   3.43
S.002 Term - 194136 194042   95  1  2   75   49    90 0.826   0.81
S.003 Init - 194342 194222  121  2  1   68   74    95 0.901   6.50


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586f:27680331_27898163|GENSCAN_predicted_peptide_1|374_aa
XDLDMPFAKWTKEQVCNWLMEQGLGSYLNSGKHWIASGQTLLQASQQDLEKELGIKHSLH
RKKLQLALQALGSEEETNHGKLDFNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDD
LLSLKVVSVLHHLSIKRAIQVLRINNFEPNCLRRRPSDENTIAPSEVQKWTNHRVMEWLR
SVDLAEYAPNLRGSGVHGGLMVLEPRFNVETMAQLLNIPPNKTLLRRHLATHFNLLIGAE
AQHQKRDAMELPDYVLLTATAKVKPKKLAFSNFGNLRKKKQEDGEEYVCPMELGQASGSA
SKKGFKPGLDMRLYEEDDLDRLEQMEDSEGTVRQIGAFSEGINNLTHMLKEDDMFKDFAA
RSPSASITDEDSNV

>gi568815586f:27680331_27898163|GENSCAN_predicted_CDS_1|1125_bp
nntgacttggatatgccatttgccaagtggaccaaggagcaggtttgcaattggctgatg
gaacagggcttgggctcgtacctgaattctggcaagcactggattgcatctggccaaacg
cttttgcaggcttctcaacaagatctagagaaggaacttggaatcaagcattcacttcat
cgaaagaaactccagctagcactccaagccctgggatctgaagaagaaaccaatcatggg
aagctggatttcaactgggtcactagatggttggatgacattggcctccctcaatataag
acccagtttgatgaaggacgggttgatggtcgaatgctacattacatgactgttgatgac
ttactgtctctgaaggttgtaagtgtgctacaccatctcagtatcaaaagggccatccag
gtcctgaggatcaataactttgaaccaaactgtctacggaggcggccatctgatgagaat
accatcgccccatcagaagttcagaagtggactaaccatcgagtgatggagtggctgcgc
tccgtggacttggcagaatatgcgcccaatctcagaggcagtggtgtccatggtgggctc
atggttctagagcctcgttttaacgtagaaacaatggctcagttattgaacatcccaccc
aataagactttgctgcgaagacatttggccactcatttcaaccttctgattggggctgag
gcacagcaccagaagcgagatgccatggagctgccggattatgtacttctaacagctact
gccaaagtgaagccaaagaaacttgcctttagcaattttgggaatttgagaaagaagaaa
caggaagatggtgaagaatatgtttgtccaatggaattgggacaggcatcaggaagtgca
tctaagaaaggatttaaacctggtttggatatgcgcctgtatgaggaagatgatttggac
cggttagagcagatggaagattcagaagggacagtgagacagataggtgcattctctgaa
ggcatcaacaatctgacgcacatgttaaaagaagatgacatgtttaaagattttgctgcc
cgttcccccagtgccagcattacagatgaagactcaaacgtttga

>gi568815586f:27680331_27898163|GENSCAN_predicted_peptide_2|653_aa
MGQKASQQLALKDSKEVPVVCEVVSEAIVHAAQKLKEYLGFEYPPSKLCPAANTLNEIFL
IHFITFCQEKGVDEWLTTTKMTKHQAFLFGADWIWTFWGSNKQIKLQLAVQTLQMSSPPP
VESKPCDLSNPESRVEESSWKKSRFDKLEEFCNLIGEDCLGLFIIFGMPGKPKDIRGVVL
DSVKSQMVRSHLPGGKAVAQFVLETEDCVFIKELLRNCLSKKDGLREGGASPGSLRLAAP
GPPLTLNAACPLRLAVLAAMAAAALPAWLSLQSRARTLRAFSTAVYSATPVPTPSLRVDD
LHLTEIVGMLDSVLTPEDSSGKYRFISGEVLCRITGCFTGVRVEAKDLFGGCCSNPNEVM
VTWIKVIVEKEVWLYLRYILKALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYP
VKKGVPMAKEGNLELLKIPNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIE
IDSTDYVSSGPSVRNPRARVVVLRVKLSSLNLDDHAKKKLIKLVGERYCKTTDVLTIKTD
RCPLRRQNYDYAVYLLTVLYHESWNTEEWEKSKTEADMEEYIWENSSSERNILETLLQMK
AAEKNMEINKEELLGTKEIEEYKKSVVSLKNEEENENSISQYKESVKRLLNVT

>gi568815586f:27680331_27898163|GENSCAN_predicted_CDS_2|1962_bp
atggggcagaaagcatcgcaacagttggctctgaaggacagcaaagaggtgcccgtcgtc
tgtgaggtggtcagtgaagctatagtccatgcagctcagaaactgaaggagtaccttgga
tttgaatatcctccaagtaaactctgcccagctgcaaatactctgaatgagatcttctta
atccatttcatcactttctgccaagaaaagggagttgatgagtggctgaccaccaccaag
atgaccaagcaccaagccttcctgtttggtgcagactggatttggaccttttggggatcc
aacaagcaaataaagcttcagctcgcagtacagactctgcagatgtcttcacctcctcct
gtggaatctaagccttgtgacctttccaatccagaatcaagggtagaggagtcttcctgg
aagaaaagtagatttgataagctggaagaattctgtaacttaataggagaggattgcctg
ggtctgtttatcatctttggtatgccaggaaagcctaaagacatcaggggagttgtcctg
gacagtgtcaaaagtcagatggtgaggagccatctgccaggagggaaggctgtggctcag
tttgtcctggaaactgaagattgtgtgttcatcaaagagctgctcagaaattgtctgagt
aagaaagacgggctgagagagggcggtgccagcccagggagcctgcgcttagcggcccca
ggcccgcccctgacactgaacgccgcttgtcccctccggcttgccgtcctcgcagccatg
gcggccgccgcgctcccagcatggctgtctctgcagtcgagggcaaggactctgcgtgca
ttctccactgccgtctactcggccactccggtcccgacacctagcctgcgcgttgatgac
ctccatttaacagagattgtagggatgcttgatagcgtgcttaccccggaggactctagt
ggaaaatacagatttattagcggagaagtgctatgtaggatcactggctgctttactggg
gtaagagtggaagccaaagatctgtttggaggctgttgcagtaatccaaatgaggtgatg
gtgacttggattaaagtaatagtggagaaggaggtgtggttgtatttgcgatatattttg
aaggcactacctcctaggacagagaaaatggctgttgaccaggactggcctagtgtttac
ccagttgcagcaccatttaaaccctctgcagtacctcttcctgttcgaatgggttatcca
gtaaaaaagggcgtgcccatggcaaaggagggaaatctagaacttttaaagattcccaat
tttctgcatttgactcctgtagcaattaaaaagcactgtgaagcccttaaagatttttgc
actgagtggccagccgcactggacagtgacgagaaatgtgagaagcattttccaattgaa
attgacagcactgattatgtttcatcaggaccatctgttcggaaccccagagcacgagta
gtagtcttaagagtaaagctttccagtttgaatttagatgatcacgcaaagaagaaatta
attaaacttgtaggagagcgatactgcaagaccacagatgtgcttaccatcaaaacagat
aggtgccctttaaggaggcagaattacgattatgcagtgtatctactaacagtgttatac
catgagtcttggaatactgaagaatgggaaaaaagtaagactgaagcagacatggaagag
tatatatgggaaaatagctcatcagaaagaaatatcctggaaacgcttctccagatgaaa
gctgctgagaaaaatatggaaataaataaagaagagctccttggtactaaagaaattgaa
gagtacaaaaagtctgttgttagtcttaaaaatgaggaggaaaatgaaaattccatttct
cagtacaaagaatccgtgaagagactattaaatgtgacatga

>gi568815586f:27680331_27898163|GENSCAN_predicted_peptide_3|380_aa
MRPLYQRDLDLRFFYASTGNNARFSGDCWIRRFPGLLINLEESQKLGAQFLKYYSESTGQ
KCSRSCCLRKDDAFNSRKSSLRGDSGGAGRFLEFSRSMNLPDSTAEKLWPLDCRGYFSCN
LAVFYHSPIHDNINCLHVHCPTLESCILEPGTSAILYNITDGIDPDLLVFEQSPTYLNTR
SSSNRWDRLRILKAMNLDKQTTTINGMLPSTEAPSSTTHQDLVVNTNSTSYSKELTTDFW
ARFTSLNESITTKINKVSPSTDFISNPDNKTISPFFEPIDTKLSHMPVPPGLNSSKQLLN
KTKGYNSRNHTSANEDEVSVTSKTWLVSVALCTSVIFLGCCIVILASGCCGKQQGQYKPG
QRKSGSLQIKNRNHMKENSS

>gi568815586f:27680331_27898163|GENSCAN_predicted_CDS_3|1143_bp
atgcgtcccctgtatcaaagagacttggacctacgatttttctatgcctcaaccggcaac
aatgccagattcagtggagactgctggatccgtcgcttcccaggtcttctaatcaatctg
gaggagtctcagaagctgggagcccagttcttgaagtattattctgaaagcactggccag
aagtgcagtaggagctgctgtcttcggaaggatgatgcttttaactcccgtaagtcctca
ctgaggggagatagcggaggggcaggacgctttcttgaattttcccgtagcatgaattta
cctgactccacagcagagaagctctggcctttggactgtcggggatacttttcctgtaac
ctggctgtcttctaccacagtcctattcatgacaatatcaactgcctccatgttcactgc
ccaacactggagagctgcatattagagcctggaaccagtgccattttgtacaacataaca
gacggtatagatccggatttgctggtttttgaacaatctcccacatatctaaatactcgt
tcttcatccaatagatgggacagactaaggattctaaaagctatgaatttagataaacaa
accaccacgataaatggtatgctgccatccacagaggctccatcctcaaccacgcatcaa
gatttggttgtaaacacaaacagtaccagttattctaaggaattaaccacagatttttgg
gcaagatttacttccctgaatgagtccattaccacaaagataaataaggtgtcaccaagt
actgatttcatcagcaatccagataataagactatttctcctttctttgaacccatagac
acaaaactttctcatatgcctgttccacctggactcaacagtagcaaacaattactaaac
aaaaccaaaggatacaatagcagaaaccacacatctgcaaatgaagatgaggtatctgtg
acttcaaagacttggctggtttctgtggccctttgcacctctgtcatctttctcggctgt
tgtatagtcatcctggcatctggatgctgtggaaagcagcagggccagtataaaccagga
cagagaaaatcaggatccttgcaaattaaaaaccgtaaccatatgaaggagaactcttca
tag

>gi568815586f:27680331_27898163|GENSCAN_predicted_peptide_4|505_aa
MSAEEMVQIRLEDRCYPVSKRKLIEQSDYFRALYRSGMREALSQEAGGPEVQQLRGLSAP
GLRLVLDFINAGGAREGWLLGPRGEKGGGVDEDEEMDEVSLLSELVEAASFLQVTSLLQL
LLSQVRLNNCLEMYRLAQVYGLPDLQEACLRFMVVHFHEVLCKPQFHLLGSPPQAPGDVS
LKQRLREARMTGTPVLVALGDFLGGPLAPHPYQGEPPSMLRYEEMTERWFPLANNLPPDL
VNVRGYGSAILDNYLFIVGGYRITSQEISAAHSYNPSTNEWLQVASMNQKRSNFKLVAVN
SKLYAIGGQAVSNVECYNPEQDAWNFVAPLPNPLAEFSACECKGKIYVIGGYTTRDRNMN
ILQYCPSSDMWTLFETCDVHIRKQQMVSVEETIYIVGGCLHELGPNRRSSQSEDMLTVQS
YNTVTRQWLYLKENTSKSGLNLTCALHNDGIYIMSRDVTLSTSLEHRVFLKYNIFSDSWE
AFRRFPAFGHNLLVSSLYLPNKAET

>gi568815586f:27680331_27898163|GENSCAN_predicted_CDS_4|1518_bp
atgtcggccgaggagatggtgcagatccgcctggaggaccgctgctacccggtgagcaag
aggaagctcatcgagcagagcgactacttccgcgccctctaccgctccggcatgcgcgag
gccctgagccaggaggccggcggcccggaggtgcagcagctgcgcggcctcagcgcgccg
ggcctgcggctggtgctggacttcatcaacgccggcggggcccgcgaaggctggctcctg
ggcccgcgcggggaaaagggcggcggggtggacgaggacgaggagatggatgaggtgagc
ctgctgtccgagctggtggaggcggcctccttcctgcaggtcacgtccctgctgcagctg
ctgctgtcccaggtgcggctcaataactgcctggagatgtaccgcctggcgcaggtgtac
gggctgcccgacctgcaggaggcctgcctgcgcttcatggtcgtccacttccacgaggtg
ctgtgcaagccccagttccacctcctggggtctcctccccaagctccaggggatgtcagc
ctgaagcagaggctgagggaggcccggatgactgggactcctgtcctcgtggccctcggg
gacttcctggggggacccctggcccctcacccctaccagggggagcccccgtccatgctc
aggtacgaggagatgactgagcgttggttcccgctggccaacaaccttcctcccgacctg
gtcaatgtcaggggctatgggtctgccatcctggacaactacctcttcatagtgggcggg
tacaggatcactagccaggagatctccgctgcgcattcctacaaccccagcaccaacgag
tggctccaggtggcctccatgaaccagaagaggtctaacttcaaacttgtggctgttaat
tcaaaactctatgccatcggagggcaggccgtttctaacgttgagtgttacaaccccgag
caggatgcgtggaattttgtggcgcccttacccaatcctctggctgagttctctgcctgt
gagtgtaagggaaaaatttatgtcattggaggatacactaccagagaccggaacatgaac
attttgcagtactgcccctcttccgacatgtggacgctctttgaaacatgtgacgtccac
attcgcaagcagcagatggtgtctgtggaagagaccatctacatcgtgggggggtgtctc
cacgagctggggcccaaccgcaggagcagccagagcgaggacatgctcaccgtgcagtcc
tacaacaccgtcacccgccagtggctctacctcaaggagaacacgtccaaatcgggtctt
aacttgacttgtgcgctccataacgacggcatctacatcatgagcagagacgtcaccctg
tcgaccagcttggaacaccgagtgttcctcaagtacaacatcttttcagatagttgggaa
gcatttcggcgttttccagcttttggacataacttgctggtttcttctctttatctgccc
aataaagcagaaacatga

>gi568815586f:27680331_27898163|GENSCAN_predicted_peptide_5|208_aa
MESYLVMKKEILSSFSMRMSLEDIVSSETSQAQKDTTHSHSYMEAKKVDPIKIESRIVVT
GGWKGEGGGGKGGEGEKEEEEEEEIGPWDVVWERQTPMVSDYPKAKREIDAIKLKEEAAT
SPPGRSAMERAAAKQDQRLPDWLTRKPTPPLARERIPFKPVTTDFLKVRHMLTEMVLPAV
TAERWNPAHSLTDAITKYQIISECFQSK

>gi568815586f:27680331_27898163|GENSCAN_predicted_CDS_5|627_bp
atggaatcctatttagtcatgaaaaaggagatcctgtcttccttctctatgcggatgagc
ctggaggacatcgtgtcaagtgaaacaagtcaggcacagaaagataccacccattctcat
tcctatatggaagctaaaaaagttgatcccataaaaatagagagtagaattgtggttacc
ggaggctggaaaggagaaggaggaggaggaaaaggaggagaaggagaaaaagaggaagaa
gaagaagaggaaataggtccctgggatgtagtctgggaacggcagacccctatggtttca
gattatcccaaagctaagagagagattgacgccatcaaactgaaggaagaggctgccact
tcacccccaggcaggtcagccatggaacgcgctgctgcaaagcaggaccagaggctccca
gactggctcactcggaaacccactcctccactagcaagagaaaggataccctttaaacca
gtgaccactgactttcttaaagtgaggcacatgctaactgaaatggttctgcccgctgtt
actgcagaaagatggaatccagctcacagtttaactgatgccattacaaaatatcagata
atttcagagtgttttcaatcaaaataa

>gi568815586f:27680331_27898163|GENSCAN_predicted_peptide_6|193_aa
MLKVNQRTVDCLTDGGKSKPVLKWWDAGSRGKLWFEKQIQENSEFKVPVRNEAKALKRKG
LSESLHKESLSQTLGPPPCYTVRNSPSSTPPQDTRVFSLATFPQRNYSHEAQGSVGRMCS
TMRQVWWKADSLQAKNESSQRWINDLKCFLQGPLPGKSFQAQYNSQGGDRDGRDRGLEEP
KKSEFCEPKFPRY

>gi568815586f:27680331_27898163|GENSCAN_predicted_CDS_6|582_bp
atgctaaaagtaaatcagagaactgtggattgcttaactgatggaggaaagtcaaaacca
gtgctgaaatggtgggatgcaggaagtaggggcaagctatggtttgagaagcaaatccag
gaaaactcagaattcaaggtacctgttaggaatgaggccaaggcactgaaaagaaaaggc
ctgtctgaaagtctacataaggaaagtctatctcagaccctaggcccacccccatgctac
actgtcaggaactctccatcttccaccccaccacaagatacaagggttttctccctagca
acatttccccagagaaactacagtcatgaagcacagggaagtgtggggaggatgtgctct
actatgcggcaggtctggtggaaagctgacagtctccaagccaagaacgaaagcagccag
cgctggataaacgacttgaagtgctttctccagggaccccttccaggaaagagttttcaa
gcccagtacaacagccagggtggagaccgggacggcagagacagagggctggaagaacct
aaaaagagtgaattctgtgaaccaaagtttccacgatattga

>gi568815586f:27680331_27898163|GENSCAN_predicted_peptide_7|160_aa
MSAETLQARKEWDDMLKVHADLKDTPNKHSQHYAVSGSASWRTQIVSSGINLALSLGFLI
DTQYKKRAQNCAEAEMDELTGVVFGKWVITNFAELKDYVLTQCKEAKTMITEEPLPGYAR
VYTDKLCGGVARTLKWELGCEASATRAATCDSAASQETRF

>gi568815586f:27680331_27898163|GENSCAN_predicted_CDS_7|483_bp
atgtcagcagaaaccctgcaggccagaaaagaatgggatgacatgttgaaagtgcatgct
gatctcaaggacacacccaataaacattctcagcactacgctgtctcaggttctgcttcc
tggagaacccaaattgtgtcatcaggaatcaatttggcattatcccttgggtttttaatc
gatacccagtacaaaaaaagggcacagaactgtgctgaagctgagatggatgaactgaca
ggagtagtcttcggaaagtgggtaataacaaacttcgctgagctaaaggattatgttcta
acccaatgcaaagaagctaagaccatgataacagaagagccattgccgggttatgctcgt
gtgtacacagacaagctttgtggtggtgtggcgaggaccctgaagtgggagttgggatgc
gaagcttctgcaacaagggctgccacatgtgattcagctgcatctcaagaaacaaggttt
tga