FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9297, 314 aa
  1>>>pF1KB9297 314 - 314 aa - 314 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4410+/-0.000808; mu= 14.7821+/- 0.049
 mean_var=62.2707+/-12.154, 0's: 0 Z-trim(106.8): 12  B-trim: 0 in 0/51
 Lambda= 0.162530
 statistics sampled from 9193 (9196) to 9193 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.282), width:  16
 Scan time:  1.900

The best scores are:                                      opt bits E(32554)
CCDS5536.1 TMEM248 gene_id:55069|Hs108|chr7        ( 314) 2108 502.7 1.5e-142


>>CCDS5536.1 TMEM248 gene_id:55069|Hs108|chr7             (314 aa)
 initn: 2108 init1: 2108 opt: 2108  Z-score: 2672.8  bits: 502.7 E(32554): 1.5e-142
Smith-Waterman score: 2108; 100.0% identity (100.0% similar) in 314 aa overlap (1-314:1-314)

               10        20        30        40        50        60
pF1KB9 MFSINPLENLKVYISSRPPLVVFMISVSAMAIAFLTLGYFFKIKEIKSPEMAEDWNTFLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MFSINPLENLKVYISSRPPLVVFMISVSAMAIAFLTLGYFFKIKEIKSPEMAEDWNTFLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 RFNDLDLCVSENETLKHLTNDTTTPESTMTSGQARASTQSPQALEDSGPVNISVSITLTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RFNDLDLCVSENETLKHLTNDTTTPESTMTSGQARASTQSPQALEDSGPVNISVSITLTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DPLKPFGGYSRNVTHLYSTILGHQIGLSGREAHEEINITFTLPTAWSSDDCALHGHCEQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DPLKPFGGYSRNVTHLYSTILGHQIGLSGREAHEEINITFTLPTAWSSDDCALHGHCEQV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VFTACMTLTASPGVFPVTVQPPHCVPDTYSNATLWYKIFTTARDANTKYAQDYNPFWCYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VFTACMTLTASPGVFPVTVQPPHCVPDTYSNATLWYKIFTTARDANTKYAQDYNPFWCYK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 GAIGKVYHALNPKLTVIVPDDDRSLINLHLMHTSYFLFVMVITMFCYAVIKGRPSKLRQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GAIGKVYHALNPKLTVIVPDDDRSLINLHLMHTSYFLFVMVITMFCYAVIKGRPSKLRQS
              250       260       270       280       290       300

              310    
pF1KB9 NPEFCPEKVALAEA
       ::::::::::::::
CCDS55 NPEFCPEKVALAEA
              310    




314 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:44:11 2016 done: Sat Nov  5 19:44:11 2016
 Total Scan time:  1.900 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]