FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1074, 710 aa
  1>>>pF1KE1074 710 - 710 aa - 710 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4934+/-0.00128; mu= 18.5106+/- 0.077
 mean_var=61.1513+/-11.905, 0's: 0 Z-trim(99.4): 42  B-trim: 2 in 1/48
 Lambda= 0.164010
 statistics sampled from 5715 (5725) to 5715 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.516), E-opt: 0.2 (0.176), width:  16
 Scan time:  2.950

The best scores are:                                      opt bits E(32554)
CCDS2371.1 FASTKD2 gene_id:22868|Hs108|chr2        ( 710) 4654 1110.6       0
CCDS5501.1 TBRG4 gene_id:9238|Hs108|chr7           ( 631)  262 71.3 4.9e-12


>>CCDS2371.1 FASTKD2 gene_id:22868|Hs108|chr2             (710 aa)
 initn: 4654 init1: 4654 opt: 4654  Z-score: 5945.2  bits: 1110.6 E(32554):    0
Smith-Waterman score: 4654; 100.0% identity (100.0% similar) in 710 aa overlap (1-710:1-710)

               10        20        30        40        50        60
pF1KE1 MLTTLKPFGSVSVESKMNNKAGSFFWNLRQFSTLVSTSRTMRLCCLGLCKPKIVHSNWNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MLTTLKPFGSVSVESKMNNKAGSFFWNLRQFSTLVSTSRTMRLCCLGLCKPKIVHSNWNI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LNNFHNRMQSTDIIRYLFQDAFIFKSDVGFQTKGISTLTALRIERLLYAKRLFFDSKQSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 LNNFHNRMQSTDIIRYLFQDAFIFKSDVGFQTKGISTLTALRIERLLYAKRLFFDSKQSL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VPVDKSDDELKKVNLNHEVSNEDVLTKETKPNRISSRKLSEECNSLSDVLDAFSKAPTFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 VPVDKSDDELKKVNLNHEVSNEDVLTKETKPNRISSRKLSEECNSLSDVLDAFSKAPTFP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 SSNYFTAMWTIAKRLSDDQKRFEKRLMFSHPAFNQLCEHMMREAKIMQYKYLLFSLHAIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 SSNYFTAMWTIAKRLSDDQKRFEKRLMFSHPAFNQLCEHMMREAKIMQYKYLLFSLHAIV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 KLGIPQNTILVQTLLRVTQERINECDEICLSVLSTVLEAMEPCKNVHVLRTGFRILVDQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 KLGIPQNTILVQTLLRVTQERINECDEICLSVLSTVLEAMEPCKNVHVLRTGFRILVDQQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 VWKIEDVFTLQVVMKCIGKDAPIALKRKLEMKALRELDRFSVLNSQHMFEVLAAMNHRSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 VWKIEDVFTLQVVMKCIGKDAPIALKRKLEMKALRELDRFSVLNSQHMFEVLAAMNHRSL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 ILLDECSKVVLDNIHGCPLRIMINILQSCKDLQYHNLDLFKGLADYVAATFDIWKFRKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 ILLDECSKVVLDNIHGCPLRIMINILQSCKDLQYHNLDLFKGLADYVAATFDIWKFRKVL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 FILILFENLGFRPVGLMDLFMKRIVEDPESLNMKNILSILHTYSSLNHVYKCQNKEQFVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 FILILFENLGFRPVGLMDLFMKRIVEDPESLNMKNILSILHTYSSLNHVYKCQNKEQFVE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 VMASALTGYLHTISSENLLDAVYSFCLMNYFPLAPFNQLLQKDIISELLTSDDMKNAYKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 VMASALTGYLHTISSENLLDAVYSFCLMNYFPLAPFNQLLQKDIISELLTSDDMKNAYKL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 HTLDTCLKLDDTVYLRDIALSLPQLPRELPSSHTNAKVAEVLSSLLGGEGHFSKDVHLPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 HTLDTCLKLDDTVYLRDIALSLPQLPRELPSSHTNAKVAEVLSSLLGGEGHFSKDVHLPH
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE1 NYHIDFEIRMDTNRNQVLPLSDVDTTSATDIQRVAVLCVSRSAYCLGSSHPRGFLAMKMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 NYHIDFEIRMDTNRNQVLPLSDVDTTSATDIQRVAVLCVSRSAYCLGSSHPRGFLAMKMR
              610       620       630       640       650       660

              670       680       690       700       710
pF1KE1 HLNAMGFHVILVNNWEMDKLEMEDAVTFLKTKIYSVEALPVAAVNVQSTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 HLNAMGFHVILVNNWEMDKLEMEDAVTFLKTKIYSVEALPVAAVNVQSTQ
              670       680       690       700       710

>>CCDS5501.1 TBRG4 gene_id:9238|Hs108|chr7                (631 aa)
 initn: 101 init1:  73 opt: 262  Z-score: 329.6  bits: 71.3 E(32554): 4.9e-12
Smith-Waterman score: 288; 21.5% identity (54.8% similar) in 535 aa overlap (194-702:106-630)

           170       180       190         200       210        220
pF1KE1 NSLSDVLDAFSKAPTFPSSNYFTAMWTIAKRLSD--DQKRFEKRLMFSHPAFNQL-CEHM
                                     :::   ..:  .: :...   :.:: :   
CCDS55 IKKATRPEELLELLGGSHDLDSNQAAMVLIRLSHLLSEKPEDKGLLIQDAHFHQLLCLLN
          80        90       100       110       120       130     

                230       240       250       260       270        
pF1KE1 MREAKIMQ--YKYLLFSLHAIVKLGIPQNTILVQTLLRVTQERINECDEICLSVLSTVLE
        . :.. .   . :: ::.:   ::::. .  .:.. . .. :. .     :. :.    
CCDS55 SQIASVWHGTLSKLLGSLYA---LGIPKASKELQSVEQEVRWRMRKLKYKHLAFLAESCA
         140       150          160       170       180       190  

      280       290       300       310       320       330        
pF1KE1 AMEPCKNVHVLRTGFRILVDQQVWKIEDVFTLQVVMKCIGKDAPIALKRKLEMKALRELD
       ..   .. . : . .   ....  .:::  :: .::  .:. .   ..: :: : :. ..
CCDS55 TLSQEQHSQELLAELLTHLERRWTEIEDSHTLVTVMMKVGHLSEPLMNR-LEDKCLELVE
            200       210       220       230       240        250 

      340       350       360       370       380       390        
pF1KE1 RFSVLNSQHMFEVLAAMNHRSLILLDECSKVVLDNIHGCPLRIMINILQSCKDLQYHNLD
       .:.  . .... .:::...::. ::   :  ....  .    .....  .   :..:. .
CCDS55 HFGPNELRKVLVMLAAQSRRSVPLLRAISYHLVQKPFSLTKDVLLDVAYAYGKLSFHQTQ
             260       270       280       290       300       310 

      400       410       420       430       440       450        
pF1KE1 LFKGLADYVAATFDIWKFRKVLFILILFENLGFRPVGLMDLFMKRIVEDPESLNMKNILS
       . . ::  . . .      .:      :  : .  . :.. : .....  ..... .. :
CCDS55 VSQRLATDLLSLMPSLTSGEVAHCAKSFALLKWLSLPLFEAFAQHVLNRAQDITLPHLCS
             320       330       340       350       360       370 

      460       470       480       490       500       510        
pF1KE1 ILHTYSSLNHVYKCQNKEQFVEVMASALTGYLHTISSENLLDAVYSFCLMNYFPLAPFNQ
       .: ... ::  .. ....::  ..   : . :  .     .: :...:...    : .. 
CCDS55 VLLAFARLN--FHPDQEDQFFSLVHEKLGSELPGLEPALQVDLVWALCVLQQAREAELQA
             380         390       400       410       420         

      520       530       540       550       560           570    
pF1KE1 LLQKDIISELLTSDDMKNAYKLHTLDTCLKLDDTVYLRDIALSLPQLPREL----PS---
       .:. ..  ..: . ..:.    .:..  :... :. :.    : : ::       ::   
CCDS55 VLHPEFHIQFLGGKSQKDQ---NTFQKLLHINATALLEYPEYSGPLLPASAVAPGPSALD
     430       440          450       460       470       480      

                580       590       600       610       620        
pF1KE1 ---SHTNAKVAEVLSSLLGGEGHFSKDVHLPHNYHIDFEIRMDTNRNQVLPLSDV-----
          .  . .. :.:..:::.  . : .:   ... .: :. .:.. .. ::. :      
CCDS55 RKVTPLQKELQETLKGLLGSADKGSLEVATQYGWVLDAEVLLDSD-GEFLPVRDFVAPHL
        490       500       510       520       530        540     

             630          640       650       660       670        
pF1KE1 --DTTSATDI---QRVAVLCVSRSAYCLGSSHPRGFLAMKMRHLNAMGFHVILVNNWEMD
          : : .     .:.: :      .   :.   : ...  ::. : :: .. :  .:  
CCDS55 AQPTGSQSPPPGSKRLAFLRWEFPNFNSRSKDLLGRFVLARRHIVAAGFLIVDVPFYEWL
         550       560       570       580       590       600     

      680        690       700       710
pF1KE1 KLEME-DAVTFLKTKIYSVEALPVAAVNVQSTQ
       .:. : .  ..:: :. .. :  .:        
CCDS55 ELKSEWQKGAYLKDKMRKAVAEELAK       
         610       620       630        




710 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:27:34 2016 done: Sat Nov  5 19:27:34 2016
 Total Scan time:  2.950 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]