GENSCAN 1.0	Date run:  8-Nov-116	Time: 09:45:26

Sequence gi568815582r:11180995_11381238 : 200244 bp : 50.56% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1503   1644  142  0  1   88   57    53 0.516   2.56
 1.02 Intr +   2521   2598   78  0  0  122   14    55 0.518   1.25
 1.03 Term +   4763   4918  156  1  0   84   47   100 0.694   3.43
 1.04 PlyA +   5736   5741    6                               1.05

 2.03 PlyA -   6044   6039    6                               1.05
 2.02 Term -  12829  12488  342  1  0   15   54   436 0.979  27.41
 2.01 Init -  13467  13399   69  0  0   51   90    48 0.506   2.35
 2.00 Prom -  16053  16014   40                              -5.26

 3.00 Prom +  19413  19452   40                              -6.66
 3.01 Init +  23442  23450    9  2  0   68   80    20 0.385  -1.44
 3.02 Intr +  23537  23637  101  1  2   27   91   127 0.723   5.81
 3.03 Intr +  24234  24358  125  0  2   45   71    59 0.704   0.13
 3.04 Intr +  24976  25019   44  2  2  108   80    94 0.707   8.56
 3.05 Intr +  25661  25776  116  1  2   84   76    14 0.368  -0.95
 3.06 Intr +  26941  27021   81  1  0   60   46    94 0.251   1.15
 3.07 Intr +  30683  30809  127  2  1   84   78   121 0.630  11.38
 3.08 Intr +  43107  43170   64  2  1  120   80    22 0.309   2.89
 3.09 Intr +  47329  47440  112  2  1   59   71    53 0.499   0.14
 3.10 Intr +  48854  48944   91  2  1   67   32    83 0.345   0.60
 3.11 Intr +  49043  49207  165  1  0   77   94    86 0.783   8.26
 3.12 Intr +  57404  57429   26  1  2  107   81    13 0.212  -0.68
 3.13 Term +  62007  62484  478  0  1   65   43   349 0.373  22.41
 3.14 PlyA +  66902  66907    6                               1.05

 4.05 PlyA -  69778  69773    6                               1.05
 4.04 Term -  74534  73849  686  0  2  137   47  1171 0.927 111.70
 4.03 Intr -  75243  75085  159  1  0   -4   99   107 0.080   2.56
 4.02 Intr -  88226  87869  358  2  1   45   80   248 0.382  14.53
 4.01 Init -  89050  88967   84  1  0   98   80     6 0.712   1.82
 4.00 Prom -  89735  89696   40                              -9.16

 5.12 PlyA -  89869  89864    6                               1.05
 5.11 Term -  92570  92290  281  0  2   17   46   484 0.028  32.71
 5.10 Intr -  95422  95106  317  0  2   89   30   193 0.085   9.31
 5.09 Intr - 100307 100133  175  0  1   92   80   147 0.451  13.30
 5.08 Intr - 111631 111507  125  0  2   50   20    93 0.003  -1.07
 5.07 Intr - 126423 126370   54  2  0   86   76    34 0.016   0.09
 5.06 Intr - 129636 129521  116  0  2   53   71   112 0.049   5.25
 5.05 Intr - 129840 129731  110  1  2    8  111    59 0.010   0.20
 5.04 Intr - 147602 147477  126  0  0   65  111    48 0.706   5.45
 5.03 Intr - 150875 150740  136  2  1   86   98    21 0.166   3.04
 5.02 Intr - 159899 159790  110  0  2   65  100    42 0.054   3.10
 5.01 Init - 161386 161380    7  1  1   72   75     7 0.212  -1.52
 5.00 Prom - 162024 161985   40                              -6.26

 6.00 Prom + 162157 162196   40                              -4.26
 6.01 Init + 164478 164772  295  2  1   91   95   401 0.988  36.45
 6.02 Intr + 169648 169766  119  2  2   88   60    65 0.413   3.88
 6.03 Term + 173002 173049   48  0  0  112   43    64 0.583   1.60
 6.04 PlyA + 175525 175530    6                               1.05

 7.05 PlyA - 177547 177542    6                              -1.75
 7.04 Term - 177785 177585  201  2  0  102   42   120 0.671   6.19
 7.03 Intr - 180840 180714  127  2  1   55   34   118 0.244   3.78
 7.02 Intr - 191475 191218  258  2  0   56   96   101 0.348   4.28
 7.01 Intr - 191673 191522  152  0  2   71   10   134 0.234   2.86

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  92601  92290  312  0  0   74   46   536 0.961  43.93


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815582r:11180995_11381238|GENSCAN_predicted_peptide_1|125_aa
XWLPIQASGSASVDLDSQALPRRTSVASSVIVARLGRGKQEGSPPRTEAPGLLALLQPWV
YLPHLETSHLGSQAVSELRPSCCWYLSDERDLKQGGVGGSAGFGVADEVQVPAPMLPIPV
ALSTW

>gi568815582r:11180995_11381238|GENSCAN_predicted_CDS_1|378_bp
nngtggctgcccatccaagcctcaggctctgcatctgtggatttggacagccaagcccta
cctcgcaggacaagcgtagcgagcagcgtcattgttgccaggctgggccgagggaagcag
gaaggctccccaccgaggacagaggccccggggctgctggccctgctccagccctgggtc
tacctgccccacttagagaccagccacctgggctcccaggccgtatctgagctgagaccg
agctgctgctggtatctcagtgatgagcgagacctcaagcagggtggagtaggtggcagt
gcaggctttggagttgctgacgaggttcaagtccctgcaccaatgctccccatccctgtg
gccttgagtacatggtga

>gi568815582r:11180995_11381238|GENSCAN_predicted_peptide_2|136_aa
MHEFTRPKKSPAKALKHKIANVKSEIPSPKRRGGRRRKKEGGGGEEEEEEEEEEEEEEQD
EEEEGGKEGKDEEEEEEELEEEEKMIIMIMTDDEEKEEEEEDEEEGEERKRRKKKSYDAD
GPGTMAYTCNPSTLRD

>gi568815582r:11180995_11381238|GENSCAN_predicted_CDS_2|411_bp
atgcatgagttcaccaggcccaagaaatcgcctgcaaaggctctgaaacacaaaatagca
aatgtcaagagtgagatcccatctccaaaaagaagaggaggaagaagaaggaagaaggaa
ggaggaggaggagaagaggaggaagaggaggaagaggaggaagaagaagaagagcaggat
gaggaggaagagggaggcaaagaaggaaaagatgaggaggaggaagaggaggagttagag
gaggaggaaaagatgatcatcatgataatgactgatgatgaagagaaagaagaagaggaa
gaggatgaagaggaaggggaagagaggaagaggagaaagaagaaaagttatgatgcagat
gggccaggcaccatggcttacacctgtaatcccagcactttgagagactga

>gi568815582r:11180995_11381238|GENSCAN_predicted_peptide_3|512_aa
MLMKNDQKTVTNYNVGNDDAEEEEQGPMEKDRVHTTSPNGWTSLFIPILQMQKLSFREAE
ELTLGHTASKWHSQDPNPGDAAELLGAFMSDIQTCRSSSGKLLLAPRSQLSLPGQVPLLL
PTVLSHPWLLPRTLSGGSLGHMEFLAAVKKEDFTRLALCPARTICWSRAEAASFERDLYP
PLPYRCTTPIHHHTYDVIFSEVGKLRPREVSGMSEAAQRRVRDSLSRFTSGFLLLDPEDI
LNDASGYFGLCEPCLPDCARINASVIPIFQLRRKSSRSELAPIGTAEGAVVRPDPGPDAR
GPFLLASLQSLMCCLMATSYWESPGGLEQDQGTVKWTKAFLRRKQTPVTQDSGFSSFDLD
YDFQRDYDRMYSYPARVPPPPPIARAVVPLKHQRVSGNTSQRGKSGFNSKSGQRGSSKSG
KLKGDDLQAIKQELTQIKQKVDSLLEDPEKMEKKQSKQAVEMKNGKSEEKQSSSSRETHV
KIESEGGADDSAEERDLLDDEDNEDWGMTSWS

>gi568815582r:11180995_11381238|GENSCAN_predicted_CDS_3|1539_bp
atgctcatgaaaaatgaccagaaaacagttacaaattacaatgttggcaacgatgatgct
gaggaggaagagcaggggcccatggagaaggacagggtccataccaccagccctaacgga
tggacatcgctattcattcccattctacagatgcagaaactgagcttcagggaagctgag
gagctcaccctgggtcatacggccagcaagtggcacagtcaagatccgaacccaggggat
gctgctgagctgcttggagccttcatgtcggacatccagacatgccgcagcagcagtggc
aaacttctgcttgcccccagaagccagctgagtcttccaggtcaagtccctctcctgctc
cccacagtcctgtcacacccctggctgctccccaggactctttctggggggagcctgggc
cacatggagttcctggcagctgtgaagaaggaggacttcaccaggctggctctgtgccct
gcaagaaccatctgctggagccgagcagaggctgcctcctttgaacgggacctgtaccct
ccactcccctaccgctgcaccacaccaatccatcatcacacttatgatgtcatcttctca
gaggtggggaagctgaggcccagagaggtgagtggcatgtccgaagcagcccagcgcagg
gtgcgagattctttaagccggtttacatcaggattccttttacttgaccccgaagacatc
cttaatgatgcctctggttattttggtctttgtgagccgtgtctgcctgactgtgccagg
ataaatgccagtgttattcccatttttcagctgcgacgcaagagctcaagaagtgaactg
gctcccattggcacggcagaaggagccgtggtaaggcctgatcctgggccagatgccaga
gggcccttcctgttggcatctctgcaaagcctcatgtgttgtctgatggcaacatcgtac
tgggagagccctggaggcctggagcaggaccaagggacagtcaagtggacaaaggccttt
ctgaggaggaagcagactccagttacccaggactctgggttctcctcttttgacttggac
tatgactttcaacgggattatgataggatgtacagttacccagcacgtgtacctcctcct
cctcctattgctcgggctgtagtgcccttgaaacatcagcgtgtatcaggaaacacctca
caaaggggcaaaagtggcttcaattctaagagtggacagcggggatcttccaagtctgga
aagttgaaaggagatgaccttcaggccattaagcaggagttgacccagataaaacaaaaa
gtggattctctcctggaagacccggaaaaaatggaaaagaaacagagcaaacaagcagta
gagatgaagaatggtaagtcagaagagaagcagagcagcagctcacgtgagactcatgtg
aagatagagtctgaaggtggtgcagatgactctgctgaggagagggacctactggatgat
gaggataatgaagattgggggatgaccagctggagttga

>gi568815582r:11180995_11381238|GENSCAN_predicted_peptide_4|428_aa
MAYPRLDISANWDLNPALNFPTLDLAGELHSNSQPQSRTCTRHCQTFSQSCRQSHRGSRS
QSSSQSPASHRNPTGAHSSSGHQSQSPNTSPPPKRHKKTMNSHHSPMRPTILHCRCPKNR
KNLEGKLKKKKMAKRIQQVYKTKTRSSAGLKDWRRGGRRTERAAAVAAARLLAPEHAREP
PRSAPEPPAVPPAASRAPPPAHPRTLWPTPPAGPFCRMVAHNQVAADNAVSTAAEPRRRP
EPSSSSSSSPAAPARPRPCPAVPAPAPGDTHFRTFRSHADYRRITRASALLDACGFYWGP
LSVHGAHERLRAEPVGTFLVRDSRQRNCFFALSVKMASGPTSIRVHFQAGRFHLDGSRES
FDCLFELLEHYVAAPRRMLGAPLRQRRVRPLQELCRQRIVATVGRENLARIPLNPVLRDY
LSSFPFQI

>gi568815582r:11180995_11381238|GENSCAN_predicted_CDS_4|1287_bp
atggcctacccaagactggacatcagtgcaaactgggatttgaacccggctctgaatttc
ccgactttagatctggctggggagctccatagcaactctcagccccaaagccgcacctgc
acccgccattgccaaaccttcagccagagttgcagacagagccatcgtggcagccggagc
cagagctccagccagagcccggccagccaccgcaacccaactggagcccacagctcatcc
ggccaccagagccagagtcccaacactagtccaccaccaaagcgccacaaaaagactatg
aactcccaccactctcccatgcggcccaccatcctgcactgccgctgccccaagaacaga
aagaacttggaaggcaagctgaaaaagaaaaaaatggccaagaggatccagcaggtgtac
aaaaccaagacgcggagctcagccggtttaaaagactggcgcaggggcgggcgccgaaca
gagcgagctgcggccgtggcagctgcacggctcctggccccggagcatgcgcgagagccg
ccccggagcgccccggagccccccgccgtcccgcccgcggcgtcccgcgccccgccgcca
gcgcacccccggacgctatggcccacccctccggctggccccttctgtaggatggtagca
cacaaccaggtggcagccgacaatgcagtctccacagcagcagagccccgacggcggcca
gaaccttcctcctcttcctcctcctcgcccgcggcccccgcgcgcccgcggccgtgcccc
gcggtcccggccccggcccccggcgacacgcacttccgcacattccgttcgcacgccgat
taccggcgcatcacgcgcgccagcgcgctcctggacgcctgcggattctactgggggccc
ctgagcgtgcacggggcgcacgagcggctgcgcgccgagcccgtgggcaccttcctggtg
cgcgacagccgccagcggaactgctttttcgcccttagcgtgaagatggcctcgggaccc
acgagcatccgcgtgcactttcaggccggccgctttcacctggatggcagccgcgagagc
ttcgactgcctcttcgagctgctggagcactacgtggcggcgccgcgccgcatgctgggg
gccccgctgcgccagcgccgcgtgcggccgctgcaggagctgtgccgccagcgcatcgtg
gccaccgtgggccgcgagaacctggctcgcatccccctcaaccccgtcctccgcgactac
ctgagctccttccccttccagatttga

>gi568815582r:11180995_11381238|GENSCAN_predicted_peptide_5|518_aa
MASLKQPPVPASPSSSFPVRSKILGRRFPATCTSEDKGKRGPLSTARLDNEFPRSPTSGP
KKGVQGNPHTPPLSTALANGPHAAGICEQRGLAAKGLEDGPSAKVSAPKAEGLGELEEAG
FQEGWPGAAHTQHTHQKVQSENGKTKSGEDGEQLEPPLTAAVNDMSNRNVVVRSPKDTFK
HTHISAIHDSSKLGTAELVDISNHYSTFCFSESDFSGYLLSPVTATLPCPWVTSESTSDV
IDTAAAYPLPSALCPPGFLDPGWLAQPRWCPALSIQAKPILHHGQVQMLSQPEPEQILPP
ETKKSQTKEAELPDTEESHEAHCSLSPGATRSPNTMVRYRVRSLSERSHEVYRQQLHGQE
QGHHGQEEQGLSPEHVEVYERTHGQSHYRRRHCSRRRLHRIHRRQHRSCRRRKRRSCRHR
RRHRRGQSPGHSPGHSTGHGRGHESSMKKLMACVSQDNFSLSSAGEEEEEEEEEGEEEEK
EELPVQGKLLLLEPERQEEGHKDNAEAQQSPEPKRTPS

>gi568815582r:11180995_11381238|GENSCAN_predicted_CDS_5|1557_bp
atggctagcctgaagcaaccccctgtgccagcctccccgagctccagcttcccagtgaga
tcaaagatccttggaaggcggtttcctgccacctgcaccagtgaggacaaaggtaagaga
ggacctctgtctacagccagacttgataatgaattccccaggagtccaacctctggccct
aaaaagggggttcaaggaaatcctcataccccacctctttcaacagcactggccaatggc
ccccatgctgcagggatctgtgagcagagaggcctggctgcaaagggtctggaggacggc
ccttctgctaaggtgtccgctcccaaggcagagggcttgggggagctggaggaggctggg
ttccaggaggggtggccaggagctgcccacacacaacacacccaccagaaggtgcaaagt
gaaaatggcaaaaccaagagtggtgaggatggggagcaactggaacccccactcactgct
gctgtgaacgatatgtccaacagaaatgtggtggtacgttctccaaaagacacgttcaag
cacacacacatcagcgctattcatgacagctccaaactgggaacagcagagcttgttgac
atcagcaaccactattccactttctgtttctctgaatccgacttctccgggtacctcctg
tcgccagtaactgccacattgccatgtccatgggtgacctctgagtcgacctctgatgtg
attgacacagctgctgcttaccccctccccagtgccctttgtccaccgggcttcctggac
ccaggttggctggctcagccaaggtggtgccctgctctgagcattcaggccaagcccatc
ctgcaccatggccaggtacagatgctgtcgcagccagagccggagcagatattaccgcca
gagacaaagaagtcgcagacgaaggaggcggagctgccagacacggaggagagccatgag
gcccactgcagcctcagcccaggagccaccagatctcccaacaccatggtccgataccgc
gtgaggagcctgagcgaacgctcgcacgaggtgtacaggcagcagttgcatgggcaagag
caaggacaccacggccaagaggagcaagggctgagcccggagcacgtcgaggtctacgag
aggacccatggccagtctcactataggcgcagacactgctctcgaaggaggctgcaccgg
atccacaggcggcagcatcgctcctgcagaaggcgcaaaagacgctcctgcaggcaccgg
aggaggcatcgcagaggccagagcccaggccacagcccaggccacagcacgggccatggc
cggggccacgaatcctccatgaaaaagctcatggcctgtgtgagtcaggataacttctcc
ttgtcatcagcgggcgaggaagaggaggaagaggaggaggagggggaagaggaggagaaa
gaagagctgccggtgcagggcaagctgctgctgctggagcctgagcggcaggaggagggc
cacaaggacaacgccgaggcccagcagagccccgagcccaagcggacaccctcctga

>gi568815582r:11180995_11381238|GENSCAN_predicted_peptide_6|153_aa
MAAAADSFSGGPAGVRLPRSPPLKVLAEQLRRDAEGGPGAWRLSRAAAGRGPLDLAAVWM
QGRVVMADRGEARLRDPSGDFSVRGLERVPRGRPCLVPGKYVMVMGVVQACSPEPCLQAV
KMTDLSDNPIHESMWELEGPIRDTTFHFVIMSP

>gi568815582r:11180995_11381238|GENSCAN_predicted_CDS_6|462_bp
atggcggcggctgcggactcgttctcaggcggccccgcgggggtgcggcttccgaggtcg
ccgccactcaaggtgctggcggagcagctgcggcgcgacgcggagggcggcccgggcgcg
tggcggctgtcacgggcggcggcgggccgcgggccgctggacctggcggccgtgtggatg
cagggcagggtagtgatggcggaccgcggcgaggctcggctgagggacccgagcggggac
ttctcggtccgcggcctggagcgggtgccgcgcgggcggccctgtctagtcccaggaaag
tatgtgatggtgatgggagtggttcaggcctgcagccctgagccctgcctgcaggctgtg
aagatgacagacctttctgataatcccatccatgaaagtatgtgggaactggagggtccc
atccgggacaccacattccatttcgtcatcatgtctccctag

>gi568815582r:11180995_11381238|GENSCAN_predicted_peptide_7|245_aa
LPDNDKIHGWDRITSMECRETQNRTCCKRTEAGLIATGLKILPGDMKLSHWRQCGQQVPA
LQRKLHLAPVHAQEIYSLIQQPFGKPLLQNADCVVGDTKPGPQLLGTGFPCLIQGSFQAG
VSLKGSDGPKPLNQKPRTLVGLWPRQIICPWQHAFPGNSNEEEKVRTIDFRVSENNFVKK
LGACMDPLVLVLRAPGSPPEEAFTSSQPVPRAALTPPVAQLSLGQEAVDLWLPSLVDDET
HRRAF

>gi568815582r:11180995_11381238|GENSCAN_predicted_CDS_7|738_bp
ctccctgacaatgacaagattcatggctgggacagaataaccagcatggaatgccgggaa
actcagaaccgcacgtgctgcaaacgcacggaagcagggctcattgccactgggctcaaa
atacttccgggggacatgaaactctcccactggagacagtgcggccagcaagtaccagct
ctgcagagaaaactccacctggcccctgttcatgcccaagagatttattcacttattcaa
cagccatttgggaagccactgcttcagaacgctgactgcgtggtgggggacacgaagcca
ggtcctcagctgcttggtactggctttccctgcctgatccaggggtcttttcaggcagga
gtttccttgaagggaagtgatggccccaagcctcttaatcagaagcccaggacactggtg
gggctgtggccccgtcagatcatctgtccctggcaacacgcttttccagggaactccaat
gaggaagagaaagtgcggaccatcgacttccgtgtctctgaaaacaactttgtaaaaaag
cttggggcatgcatggaccccttggtcctggtactcagggctccagggtccccaccagag
gaagccttcaccagttcacaaccagtgccacgggcagctctgacccctcctgtggcccag
ctatctctgggccaggaagctgtagatctgtggctgccaagcctggttgatgacgagacc
caccggagagctttctaa