Result of FASTA (omim) for pF1KB5451
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5451, 372 aa
  1>>>pF1KB5451 372 - 372 aa - 372 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1025+/-0.000364; mu= 8.8918+/- 0.023
 mean_var=124.2868+/-24.543, 0's: 0 Z-trim(117.7): 65  B-trim: 652 in 1/56
 Lambda= 0.115043
 statistics sampled from 29872 (29937) to 29872 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.351), width:  16
 Scan time:  7.500

The best scores are:                                      opt bits E(85289)
NP_061119 (OMIM: 616141) core histone macro-H2A.2  ( 372) 2370 404.3 2.3e-112
NP_613258 (OMIM: 610054) core histone macro-H2A.1  ( 372) 1639 283.0 7.6e-76
XP_011542031 (OMIM: 610054) PREDICTED: core histon ( 372) 1639 283.0 7.6e-76
XP_011542032 (OMIM: 610054) PREDICTED: core histon ( 371) 1634 282.2 1.3e-75
NP_004884 (OMIM: 610054) core histone macro-H2A.1  ( 371) 1634 282.2 1.3e-75
NP_001035248 (OMIM: 610054) core histone macro-H2A ( 371) 1634 282.2 1.3e-75
NP_613075 (OMIM: 610054) core histone macro-H2A.1  ( 369) 1587 274.4   3e-73
XP_005272189 (OMIM: 610054) PREDICTED: core histon ( 368) 1582 273.5 5.3e-73
XP_011542033 (OMIM: 610054) PREDICTED: core histon ( 270) 1119 196.6 5.6e-50
XP_011542034 (OMIM: 610054) PREDICTED: core histon ( 269) 1114 195.8 9.9e-50
XP_016865557 (OMIM: 610054) PREDICTED: core histon ( 235)  976 172.8   7e-43
XP_011542035 (OMIM: 610054) PREDICTED: core histon ( 252)  924 164.2 2.9e-40
XP_016865556 (OMIM: 610054) PREDICTED: core histon ( 251)  919 163.4 5.2e-40
XP_011542036 (OMIM: 610054) PREDICTED: core histon ( 196)  866 154.5 1.9e-37
XP_005272191 (OMIM: 610054) PREDICTED: core histon ( 199)  866 154.5 1.9e-37
XP_011542037 (OMIM: 610054) PREDICTED: core histon ( 195)  861 153.7 3.3e-37
XP_005272192 (OMIM: 610054) PREDICTED: core histon ( 198)  861 153.7 3.4e-37
XP_016865558 (OMIM: 610054) PREDICTED: core histon ( 222)  861 153.7 3.7e-37
NP_002096 (OMIM: 601772) histone H2AX [Homo sapien ( 143)  503 94.2   2e-19
NP_778235 (OMIM: 615014) histone H2A type 2-B [Hom ( 130)  493 92.5 5.8e-19
NP_734466 (OMIM: 613499) histone H2A type 1-A [Hom ( 131)  491 92.2 7.4e-19
NP_003508 (OMIM: 602797) histone H2A type 2-C [Hom ( 129)  490 92.0 8.2e-19
NP_003507 (OMIM: 142720) histone H2A type 2-A [Hom ( 130)  490 92.0 8.2e-19
NP_254280 (OMIM: 615015) histone H2A type 3 [Homo  ( 130)  486 91.4 1.3e-18
NP_003503 (OMIM: 602794) histone H2A type 1-C [Hom ( 130)  485 91.2 1.5e-18
NP_066544 (OMIM: 602791) histone cluster 1, H2aj [ ( 128)  484 91.0 1.6e-18
NP_066409 (OMIM: 602792) histone H2A type 1-D [Hom ( 130)  484 91.0 1.6e-18
NP_542163 (OMIM: 615013) histone H2A type 1-H [Hom ( 128)  483 90.9 1.8e-18
NP_003500 (OMIM: 602787) histone H2A type 1 [Homo  ( 130)  483 90.9 1.8e-18
NP_066408 (OMIM: 615012) histone H2A type 1 [Homo  ( 130)  483 90.9 1.8e-18
NP_066390 (OMIM: 602786) histone H2A type 1-B/E [H ( 130)  483 90.9 1.8e-18
NP_003501 (OMIM: 602788) histone H2A type 1 [Homo  ( 130)  483 90.9 1.8e-18
NP_003502 (OMIM: 602793) histone H2A type 1 [Homo  ( 130)  483 90.9 1.8e-18
NP_003505 (OMIM: 602796) histone H2A type 1 [Homo  ( 130)  483 90.9 1.8e-18
NP_003504 (OMIM: 602795) histone H2A type 1-B/E [H ( 130)  483 90.9 1.8e-18
NP_002097 (OMIM: 142763) histone H2A.Z [Homo sapie ( 128)  393 75.9 5.7e-14
NP_542451 (OMIM: 300445) histone H2A-Bbd type 2/3  ( 115)  236 49.8 3.7e-06
XP_011511231 (OMIM: 610028) PREDICTED: poly [ADP-r (1209)  214 46.8 0.00031
XP_011511230 (OMIM: 610028) PREDICTED: poly [ADP-r (1719)  214 46.9 0.00042
NP_060024 (OMIM: 610028) poly [ADP-ribose] polymer (1801)  214 46.9 0.00043
XP_011510782 (OMIM: 612066) PREDICTED: poly [ADP-r ( 355)  189 42.3   0.002
XP_011510778 (OMIM: 612066) PREDICTED: poly [ADP-r ( 628)  191 42.8  0.0026
XP_005247216 (OMIM: 612066) PREDICTED: poly [ADP-r ( 609)  189 42.5  0.0032
NP_001106995 (OMIM: 612066) poly [ADP-ribose] poly ( 678)  189 42.5  0.0035


>>NP_061119 (OMIM: 616141) core histone macro-H2A.2 [Hom  (372 aa)
 initn: 2370 init1: 2370 opt: 2370  Z-score: 2138.3  bits: 404.3 E(85289): 2.3e-112
Smith-Waterman score: 2370; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)

               10        20        30        40        50        60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
              310       320       330       340       350       360

              370  
pF1KB5 IYVQEMAKLDAK
       ::::::::::::
NP_061 IYVQEMAKLDAK
              370  

>>NP_613258 (OMIM: 610054) core histone macro-H2A.1 isof  (372 aa)
 initn: 1639 init1: 1639 opt: 1639  Z-score: 1482.6  bits: 283.0 E(85289): 7.6e-76
Smith-Waterman score: 1639; 67.9% identity (89.2% similar) in 371 aa overlap (1-371:1-371)

               10        20        30        40        50        60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
       ::.:.:::: .: ::::.:::::::::..::.:::  ::::.::::::::::.:::.:::
NP_613 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
       :::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
NP_613 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
       ::: :.:..::: :.... .. :  .::. . :   ..:.:  . .: ....::.:  :.
NP_613 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
       ::::.::.::: :::::.: .:.::......::.:..::.:.::::.:.:..::: ::::
NP_613 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
       :.:.: ::::..:::::: :::: . :: :::::::. : ::.::::: ::.:.::::. 
NP_613 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
       :.::::::.::: . :::: ::::::::. :::::..: .. .::.:.:::.::::::::
NP_613 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
              310       320       330       340       350       360

              370  
pF1KB5 IYVQEMAKLDAK
       ::::::::::: 
NP_613 IYVQEMAKLDAN
              370  

>>XP_011542031 (OMIM: 610054) PREDICTED: core histone ma  (372 aa)
 initn: 1639 init1: 1639 opt: 1639  Z-score: 1482.6  bits: 283.0 E(85289): 7.6e-76
Smith-Waterman score: 1639; 67.9% identity (89.2% similar) in 371 aa overlap (1-371:1-371)

               10        20        30        40        50        60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
       ::.:.:::: .: ::::.:::::::::..::.:::  ::::.::::::::::.:::.:::
XP_011 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
       :::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
XP_011 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
       ::: :.:..::: :.... .. :  .::. . :   ..:.:  . .: ....::.:  :.
XP_011 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
       ::::.::.::: :::::.: .:.::......::.:..::.:.::::.:.:..::: ::::
XP_011 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
       :.:.: ::::..:::::: :::: . :: :::::::. : ::.::::: ::.:.::::. 
XP_011 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
       :.::::::.::: . :::: ::::::::. :::::..: .. .::.:.:::.::::::::
XP_011 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
              310       320       330       340       350       360

              370  
pF1KB5 IYVQEMAKLDAK
       ::::::::::: 
XP_011 IYVQEMAKLDAN
              370  

>>XP_011542032 (OMIM: 610054) PREDICTED: core histone ma  (371 aa)
 initn: 941 init1: 941 opt: 1634  Z-score: 1478.2  bits: 282.2 E(85289): 1.3e-75
Smith-Waterman score: 1634; 68.5% identity (89.2% similar) in 371 aa overlap (1-371:1-370)

               10        20        30        40        50        60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
       ::.:.:::: .: ::::.:::::::::..::.:::  ::::.::::::::::.:::.:::
XP_011 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
       :::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
XP_011 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
       ::: :.:..::: :.. :. : ::  .:. ..:  . :..:  . .: ....::.:  :.
XP_011 KGKLEAIITPPPAKKA-KSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPA
              130        140       150       160       170         

              190       200       210       220       230       240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
       ::::.::.::: :::::.: .:.::......::.:..::.:.::::.:.:..::: ::::
XP_011 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
       :.:.: ::::..:::::: :::: . :: :::::::. : ::.::::: ::.:.::::. 
XP_011 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KB5 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
       :.::::::.::: . :::: ::::::::. :::::..: .. .::.:.:::.::::::::
XP_011 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
     300       310       320       330       340       350         

              370  
pF1KB5 IYVQEMAKLDAK
       ::::::::::: 
XP_011 IYVQEMAKLDAN
     360       370 

>>NP_004884 (OMIM: 610054) core histone macro-H2A.1 isof  (371 aa)
 initn: 941 init1: 941 opt: 1634  Z-score: 1478.2  bits: 282.2 E(85289): 1.3e-75
Smith-Waterman score: 1634; 68.5% identity (89.2% similar) in 371 aa overlap (1-371:1-370)

               10        20        30        40        50        60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
       ::.:.:::: .: ::::.:::::::::..::.:::  ::::.::::::::::.:::.:::
NP_004 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
       :::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
NP_004 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
       ::: :.:..::: :.. :. : ::  .:. ..:  . :..:  . .: ....::.:  :.
NP_004 KGKLEAIITPPPAKKA-KSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPA
              130        140       150       160       170         

              190       200       210       220       230       240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
       ::::.::.::: :::::.: .:.::......::.:..::.:.::::.:.:..::: ::::
NP_004 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
       :.:.: ::::..:::::: :::: . :: :::::::. : ::.::::: ::.:.::::. 
NP_004 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KB5 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
       :.::::::.::: . :::: ::::::::. :::::..: .. .::.:.:::.::::::::
NP_004 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
     300       310       320       330       340       350         

              370  
pF1KB5 IYVQEMAKLDAK
       ::::::::::: 
NP_004 IYVQEMAKLDAN
     360       370 

>>NP_001035248 (OMIM: 610054) core histone macro-H2A.1 i  (371 aa)
 initn: 941 init1: 941 opt: 1634  Z-score: 1478.2  bits: 282.2 E(85289): 1.3e-75
Smith-Waterman score: 1634; 68.5% identity (89.2% similar) in 371 aa overlap (1-371:1-370)

               10        20        30        40        50        60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
       ::.:.:::: .: ::::.:::::::::..::.:::  ::::.::::::::::.:::.:::
NP_001 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
       :::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
NP_001 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
       ::: :.:..::: :.. :. : ::  .:. ..:  . :..:  . .: ....::.:  :.
NP_001 KGKLEAIITPPPAKKA-KSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPA
              130        140       150       160       170         

              190       200       210       220       230       240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
       ::::.::.::: :::::.: .:.::......::.:..::.:.::::.:.:..::: ::::
NP_001 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
       :.:.: ::::..:::::: :::: . :: :::::::. : ::.::::: ::.:.::::. 
NP_001 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KB5 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
       :.::::::.::: . :::: ::::::::. :::::..: .. .::.:.:::.::::::::
NP_001 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
     300       310       320       330       340       350         

              370  
pF1KB5 IYVQEMAKLDAK
       ::::::::::: 
NP_001 IYVQEMAKLDAN
     360       370 

>>NP_613075 (OMIM: 610054) core histone macro-H2A.1 isof  (369 aa)
 initn: 902 init1: 902 opt: 1587  Z-score: 1436.1  bits: 274.4 E(85289): 3e-73
Smith-Waterman score: 1587; 66.3% identity (87.3% similar) in 371 aa overlap (1-371:1-368)

               10        20        30        40        50        60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
       ::.:.:::: .: ::::.:::::::::..::.:::  ::::.::::::::::.:::.:::
NP_613 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
       :::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
NP_613 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
       ::: :.:..::: :.... .. :  .::. . :   ..:.:  . .: ....::.:  :.
NP_613 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
       ::::.::.::: :::::...:.::. : :   ...::::.... .  ..:..::: ::::
NP_613 DGFTVLSTKSLFLGQKLQVVQADIASIDS---DAVVHPTNTDFYIGGEVGNTLEKKGGKE
              190       200          210       220       230       

              250       260       270       280       290       300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
       :.:.: ::::..:::::: :::: . :: :::::::. : ::.::::: ::.:.::::. 
NP_613 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
       240       250       260       270       280       290       

              310       320       330       340       350       360
pF1KB5 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
       :.::::::.::: . :::: ::::::::. :::::..: .. .::.:.:::.::::::::
NP_613 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
       300       310       320       330       340       350       

              370  
pF1KB5 IYVQEMAKLDAK
       ::::::::::: 
NP_613 IYVQEMAKLDAN
       360         

>>XP_005272189 (OMIM: 610054) PREDICTED: core histone ma  (368 aa)
 initn: 1444 init1: 749 opt: 1582  Z-score: 1431.6  bits: 273.5 E(85289): 5.3e-73
Smith-Waterman score: 1582; 66.8% identity (87.3% similar) in 371 aa overlap (1-371:1-367)

               10        20        30        40        50        60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
       ::.:.:::: .: ::::.:::::::::..::.:::  ::::.::::::::::.:::.:::
XP_005 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
       :::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
XP_005 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
       ::: :.:..::: :.. :. : ::  .:. ..:  . :..:  . .: ....::.:  :.
XP_005 KGKLEAIITPPPAKKA-KSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPA
              130        140       150       160       170         

              190       200       210       220       230       240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
       ::::.::.::: :::::...:.::. : :   ...::::.... .  ..:..::: ::::
XP_005 DGFTVLSTKSLFLGQKLQVVQADIASIDS---DAVVHPTNTDFYIGGEVGNTLEKKGGKE
     180       190       200          210       220       230      

              250       260       270       280       290       300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
       :.:.: ::::..:::::: :::: . :: :::::::. : ::.::::: ::.:.::::. 
XP_005 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
        240       250       260       270       280       290      

              310       320       330       340       350       360
pF1KB5 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
       :.::::::.::: . :::: ::::::::. :::::..: .. .::.:.:::.::::::::
XP_005 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
        300       310       320       330       340       350      

              370  
pF1KB5 IYVQEMAKLDAK
       ::::::::::: 
XP_005 IYVQEMAKLDAN
        360        

>>XP_011542033 (OMIM: 610054) PREDICTED: core histone ma  (270 aa)
 initn: 1119 init1: 1119 opt: 1119  Z-score: 1018.3  bits: 196.6 E(85289): 5.6e-50
Smith-Waterman score: 1119; 65.7% identity (89.4% similar) in 265 aa overlap (1-265:1-265)

               10        20        30        40        50        60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
       ::.:.:::: .: ::::.:::::::::..::.:::  ::::.::::::::::.:::.:::
XP_011 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
       :::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
XP_011 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
       ::: :.:..::: :.... .. :  .::. . :   ..:.:  . .: ....::.:  :.
XP_011 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
       ::::.::.::: :::::.: .:.::......::.:..::.:.::::.:.:..::: ::::
XP_011 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
       :.:.: ::::..:::::: ..: ::                                   
XP_011 FVEAVLELRKKNGPLEVAGGTVFQSRQQLS                              
              250       260       270                              

>>XP_011542034 (OMIM: 610054) PREDICTED: core histone ma  (269 aa)
 initn: 818 init1: 741 opt: 1114  Z-score: 1013.8  bits: 195.8 E(85289): 9.9e-50
Smith-Waterman score: 1114; 66.4% identity (89.4% similar) in 265 aa overlap (1-265:1-264)

               10        20        30        40        50        60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
       ::.:.:::: .: ::::.:::::::::..::.:::  ::::.::::::::::.:::.:::
XP_011 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
       :::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
XP_011 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
       ::: :.:..::: :.. :. : ::  .:. ..:  . :..:  . .: ....::.:  :.
XP_011 KGKLEAIITPPPAKKA-KSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPA
              130        140       150       160       170         

              190       200       210       220       230       240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
       ::::.::.::: :::::.: .:.::......::.:..::.:.::::.:.:..::: ::::
XP_011 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
       :.:.: ::::..:::::: ..: ::                                   
XP_011 FVEAVLELRKKNGPLEVAGGTVFQSRQQLS                              
     240       250       260                                       




372 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:49:15 2016 done: Sat Nov  5 12:49:16 2016
 Total Scan time:  7.500 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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