Result of FASTA (omim) for pF1KB5422
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5422, 224 aa
  1>>>pF1KB5422 224 - 224 aa - 224 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7532+/-0.00026; mu= 13.9687+/- 0.016
 mean_var=102.1951+/-21.261, 0's: 0 Z-trim(121.8): 41  B-trim: 1277 in 1/53
 Lambda= 0.126870
 statistics sampled from 38976 (39026) to 38976 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.458), width:  16
 Scan time:  6.900

The best scores are:                                      opt bits E(85289)
NP_904319 (OMIM: 609111) F-box only protein 44 iso ( 224) 1583 299.1   4e-81
XP_016858333 (OMIM: 609111) PREDICTED: F-box only  ( 224) 1583 299.1   4e-81
NP_001291719 (OMIM: 609111) F-box only protein 44  ( 224) 1583 299.1   4e-81
NP_904320 (OMIM: 609111) F-box only protein 44 iso ( 224) 1583 299.1   4e-81
XP_016858332 (OMIM: 609111) PREDICTED: F-box only  ( 255)  874 169.3 5.1e-42
NP_001291720 (OMIM: 609111) F-box only protein 44  ( 255)  874 169.3 5.1e-42
XP_006711108 (OMIM: 609111) PREDICTED: F-box only  ( 255)  874 169.3 5.1e-42
NP_149438 (OMIM: 609111) F-box only protein 44 iso ( 255)  874 169.3 5.1e-42
NP_001014765 (OMIM: 609111) F-box only protein 44  ( 255)  874 169.3 5.1e-42
XP_011540737 (OMIM: 609111) PREDICTED: F-box only  ( 256)  866 167.9 1.4e-41
XP_016858331 (OMIM: 609111) PREDICTED: F-box only  ( 256)  866 167.9 1.4e-41
XP_005263594 (OMIM: 609111) PREDICTED: F-box only  ( 256)  866 167.9 1.4e-41
XP_006711106 (OMIM: 609111) PREDICTED: F-box only  ( 256)  866 167.9 1.4e-41
XP_005263593 (OMIM: 609111) PREDICTED: F-box only  ( 256)  866 167.9 1.4e-41
NP_001317284 (OMIM: 609111) F-box only protein 44  ( 256)  866 167.9 1.4e-41
XP_005263506 (OMIM: 605647) PREDICTED: F-box only  ( 293)  692 136.1 6.1e-32
XP_006710634 (OMIM: 605647) PREDICTED: F-box only  ( 293)  692 136.1 6.1e-32
XP_011539534 (OMIM: 605647) PREDICTED: F-box only  ( 293)  692 136.1 6.1e-32
NP_060908 (OMIM: 605647) F-box only protein 6 [Hom ( 293)  692 136.1 6.1e-32
XP_016856496 (OMIM: 605647) PREDICTED: F-box only  ( 293)  692 136.1 6.1e-32
XP_005263505 (OMIM: 605647) PREDICTED: F-box only  ( 293)  692 136.1 6.1e-32
XP_005263508 (OMIM: 605647) PREDICTED: F-box only  ( 293)  692 136.1 6.1e-32
NP_036300 (OMIM: 607112) F-box only protein 2 [Hom ( 296)  367 76.6 4.9e-14
NP_079183 (OMIM: 609094) F-box only protein 17 iso ( 278)  164 39.4  0.0072
NP_680474 (OMIM: 609094) F-box only protein 17 iso ( 287)  164 39.4  0.0074


>>NP_904319 (OMIM: 609111) F-box only protein 44 isoform  (224 aa)
 initn: 1583 init1: 1583 opt: 1583  Z-score: 1577.4  bits: 299.1 E(85289): 4e-81
Smith-Waterman score: 1583; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)

               10        20        30        40        50        60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
              130       140       150       160       170       180

              190       200       210       220    
pF1KB5 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
       ::::::::::::::::::::::::::::::::::::::::::::
NP_904 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
              190       200       210       220    

>>XP_016858333 (OMIM: 609111) PREDICTED: F-box only prot  (224 aa)
 initn: 1583 init1: 1583 opt: 1583  Z-score: 1577.4  bits: 299.1 E(85289): 4e-81
Smith-Waterman score: 1583; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)

               10        20        30        40        50        60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
              130       140       150       160       170       180

              190       200       210       220    
pF1KB5 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
       ::::::::::::::::::::::::::::::::::::::::::::
XP_016 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
              190       200       210       220    

>>NP_001291719 (OMIM: 609111) F-box only protein 44 isof  (224 aa)
 initn: 1583 init1: 1583 opt: 1583  Z-score: 1577.4  bits: 299.1 E(85289): 4e-81
Smith-Waterman score: 1583; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)

               10        20        30        40        50        60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
              130       140       150       160       170       180

              190       200       210       220    
pF1KB5 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
       ::::::::::::::::::::::::::::::::::::::::::::
NP_001 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
              190       200       210       220    

>>NP_904320 (OMIM: 609111) F-box only protein 44 isoform  (224 aa)
 initn: 1583 init1: 1583 opt: 1583  Z-score: 1577.4  bits: 299.1 E(85289): 4e-81
Smith-Waterman score: 1583; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)

               10        20        30        40        50        60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_904 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
              130       140       150       160       170       180

              190       200       210       220    
pF1KB5 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
       ::::::::::::::::::::::::::::::::::::::::::::
NP_904 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
              190       200       210       220    

>>XP_016858332 (OMIM: 609111) PREDICTED: F-box only prot  (255 aa)
 initn: 874 init1: 874 opt: 874  Z-score: 875.3  bits: 169.3 E(85289): 5.1e-42
Smith-Waterman score: 874; 99.2% identity (100.0% similar) in 123 aa overlap (1-123:1-123)

               10        20        30        40        50        60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
       ::.                                                         
XP_016 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL
              130       140       150       160       170       180

>>NP_001291720 (OMIM: 609111) F-box only protein 44 isof  (255 aa)
 initn: 874 init1: 874 opt: 874  Z-score: 875.3  bits: 169.3 E(85289): 5.1e-42
Smith-Waterman score: 874; 99.2% identity (100.0% similar) in 123 aa overlap (1-123:1-123)

               10        20        30        40        50        60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
       ::.                                                         
NP_001 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL
              130       140       150       160       170       180

>>XP_006711108 (OMIM: 609111) PREDICTED: F-box only prot  (255 aa)
 initn: 874 init1: 874 opt: 874  Z-score: 875.3  bits: 169.3 E(85289): 5.1e-42
Smith-Waterman score: 874; 99.2% identity (100.0% similar) in 123 aa overlap (1-123:1-123)

               10        20        30        40        50        60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
       ::.                                                         
XP_006 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL
              130       140       150       160       170       180

>>NP_149438 (OMIM: 609111) F-box only protein 44 isoform  (255 aa)
 initn: 874 init1: 874 opt: 874  Z-score: 875.3  bits: 169.3 E(85289): 5.1e-42
Smith-Waterman score: 874; 99.2% identity (100.0% similar) in 123 aa overlap (1-123:1-123)

               10        20        30        40        50        60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
       ::.                                                         
NP_149 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL
              130       140       150       160       170       180

>>NP_001014765 (OMIM: 609111) F-box only protein 44 isof  (255 aa)
 initn: 874 init1: 874 opt: 874  Z-score: 875.3  bits: 169.3 E(85289): 5.1e-42
Smith-Waterman score: 874; 99.2% identity (100.0% similar) in 123 aa overlap (1-123:1-123)

               10        20        30        40        50        60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
       ::.                                                         
NP_001 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL
              130       140       150       160       170       180

>>XP_011540737 (OMIM: 609111) PREDICTED: F-box only prot  (256 aa)
 initn: 1569 init1: 866 opt: 866  Z-score: 867.4  bits: 167.9 E(85289): 1.4e-41
Smith-Waterman score: 1509; 87.5% identity (87.5% similar) in 256 aa overlap (1-224:1-256)

               10        20        30        40        50        60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
               70        80        90       100       110       120

                                              130       140        
pF1KB5 Q--------------------------------VRSQARLRVQVPAVRSAPVVRARASGD
       :                                :::::::::::::::::::::::::::
XP_011 QHLPQVPGGGPQGRRVLGGADGYHTAGHRGQGLVRSQARLRVQVPAVRSAPVVRARASGD
              130       140       150       160       170       180

      150       160       170       180       190       200        
pF1KB5 LPARPGDHPAEERCQVEGGLPHILQLPARRPLHLVSARRRGHSLLGRLVRPEGHQQQHHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LPARPGDHPAEERCQVEGGLPHILQLPARRPLHLVSARRRGHSLLGRLVRPEGHQQQHHH
              190       200       210       220       230       240

      210       220    
pF1KB5 RAPAALTPPEPPSAEP
       ::::::::::::::::
XP_011 RAPAALTPPEPPSAEP
              250      




224 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:45:28 2016 done: Sat Nov  5 12:45:29 2016
 Total Scan time:  6.900 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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