GENSCAN 1.0	Date run:  5-Nov-116	Time: 09:04:02

Sequence gi568815595f:182720259_183018101 : 297843 bp : 38.93% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 PlyA -    221    216    6                              -0.45
 1.04 Term -   3235   2924  312  1  0   74   40   190 0.223   6.82
 1.03 Intr -   6002   5928   75  2  0   75   56    95 0.261   3.79
 1.02 Intr -  12894  12659  236  1  2   90   98    80 0.512   5.68
 1.01 Init -  22049  21950  100  2  1   41   41   133 0.280   4.38
 1.00 Prom -  24570  24531   40                              -4.75

 2.00 Prom +  46214  46253   40                              -2.65
 2.01 Init +  62286  62339   54  2  0   52   53    54 0.028  -0.37
 2.02 Intr +  73454  73528   75  1  0   76   82   105 0.764   7.49
 2.03 Intr +  73962  74159  198  2  0   -8   12   227 0.011   4.13
 2.04 Intr +  99141  99260  120  2  0   46   45    96 0.002   0.87
 2.05 Intr + 100002 100118  117  2  0   55  116    81 0.003   7.34
 2.06 Intr + 109414 109494   81  0  0   49   80    73 0.013   1.52
 2.07 Intr + 115777 115884  108  0  0   65   67   119 0.991   7.06
 2.08 Intr + 116084 116212  129  1  0   92   47   120 0.980   8.27
 2.09 Intr + 116813 116916  104  1  2   62   80   101 0.707   4.75
 2.10 Intr + 121817 121864   48  2  0   30  116    64 0.089   0.28
 2.11 Intr + 137620 137770  151  1  1  106   63    28 0.680   1.34
 2.12 Intr + 138904 139101  198  0  0   95   67    75 0.710   4.73
 2.13 Intr + 145198 145440  243  0  0  100   94   168 0.999  15.37
 2.14 Intr + 146010 146185  176  2  2   62   86   213 0.826  16.32
 2.15 Intr + 148820 148893   74  2  2   81   91    61 0.999   3.83
 2.16 Intr + 148970 149073  104  0  2  124   97    32 0.997   6.67
 2.17 Intr + 152098 152279  182  0  2   91  111   187 0.999  19.04
 2.18 Intr + 153554 153757  204  2  0  108  116   220 0.967  24.19
 2.19 Intr + 178349 178514  166  2  1  120   91    64 0.897   8.94
 2.20 Term + 185536 185661  126  0  0  108   43    82 0.702   3.00
 2.21 PlyA + 187517 187522    6                               1.05

 3.12 PlyA - 188339 188334    6                               1.05
 3.11 Term - 191732 191611  122  0  2   67   32   138 0.223   3.76
 3.10 Intr - 224915 224850   66  0  0  118   21    58 0.007   0.06
 3.09 Intr - 227076 226980   97  0  1   71   90   115 0.997   8.66
 3.08 Intr - 227374 227292   83  2  2   63  111    14 0.161  -0.36
 3.07 Intr - 241098 240968  131  2  2   63   82   147 0.986  11.02
 3.06 Intr - 243791 243623  169  0  1   67   96   161 0.999  12.88
 3.05 Intr - 245495 245279  217  2  1   48  113   157 0.982  11.35
 3.04 Intr - 259379 259199  181  1  1   41   32   108 0.269  -0.55
 3.03 Intr - 260381 260229  153  1  0   70   77    99 0.892   5.27
 3.02 Intr - 260628 260577   52  1  1   77   59    76 0.662   0.65
 3.01 Init - 261595 261472  124  1  1   63   91    52 0.564   3.39
 3.00 Prom - 264779 264740   40                              -7.75

 4.00 Prom + 266016 266055   40                              -1.85
 4.01 Init + 271161 271270  110  2  2   93   35   107 0.012   5.64
 4.02 Intr + 278301 278485  185  0  2   50   61    61 0.001  -1.89
 4.03 Intr + 279695 279810  116  0  2   64   61    72 0.001   1.35
 4.04 Intr + 279954 280103  150  2  0   26   45   138 0.018   2.74
 4.05 Term + 282258 282383  126  2  0  123   54    88 0.035   6.20
 4.06 PlyA + 283120 283125    6                               1.05

 5.00 Prom + 286932 286971   40                              -2.75
 5.01 Sngl + 297305 297838  534  1  0   46   48   311 0.885  18.72

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 224915 224836   80  0  2  118   42    68 0.980   2.15
S.002 Sngl + 271161 271349  189  2  0   93   34   135 0.874   3.46
S.003 Intr - 285544 285402  143  0  2   54  115    66 0.858   4.98
S.004 Term - 295308 295180  129  0  0   73   37   145 0.877   5.10


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595f:182720259_183018101|GENSCAN_predicted_peptide_1|240_aa
MLRFHSIGLQVVAALSSTLRKNVSESEANQQPKDPLTHTESIPESVRYGQVKYLRMTWLG
NYMAISLAKLKAKTLQLIMKGNHARWCCLNGSSLSTQRASYAQSSPKGEDSTNYRKHWAS
DGRLRNHESLPPVLKTHNPRQIKGDLGWFSDDPDRYIEAFQNVTQVLYLTCRDVMLLLSQ
THTAAEKQAAPDIRRKLQKQAIGPGSTLEDLLKLDTSVFYNRDREEAQEKKRSTRERLRL

>gi568815595f:182720259_183018101|GENSCAN_predicted_CDS_1|723_bp
atgctacgctttcacagtatcggtctacaggtggtagctgctctttcctcaacactcagg
aagaatgtgtctgagagtgaagccaaccaacagcccaaggaccccctcacacatactgag
agcatccctgagtctgtaagatacggccaagtgaaatatttgagaatgacatggcttggg
aactacatggccataagccttgctaaattaaaagcaaaaacattgcaattaatcatgaaa
gggaaccatgctagatggtgctgtctaaatggaagctctttatctacacagagggcctca
tatgcccagtcttcacccaagggagaggacagtacaaactatcgaaaacactgggcatct
gatggccgattaaggaaccacgagagcctgccgccggtcttaaagactcataaccctagg
caaataaagggagacttgggctggttttctgatgaccctgataggtatattgaggccttc
caaaatgtaactcaagtgctttacctcacatgcagggacgttatgctgcttctaagccaa
acccacactgcagctgaaaagcaggcagctccagatattagaaggaagctacagaaacag
gccataggaccgggtagtaccttggaagacctcctgaagttggacacttcggtcttttac
aatagggaccgggaggaggcccaggagaaaaagagaagcacaagagaaagactaaggctc
tag

>gi568815595f:182720259_183018101|GENSCAN_predicted_peptide_2|885_aa
MREVCLRESTTESSTEPEPRGPRAPRDPDGDDGGMWRWIRQQLGKRRTCLLPPLVTDFWK
RVTIQSCVDSRGGGCRRCLAPSARDVSPQDLERGKTVPAAGLASETIRITICRMLKCLEG
SLATVEVEIQSSKNKVSVFLLPVKSFLPEGFDPPHQSDTRTIYVANRFPQNGLYTPQKFI
DNRIISSKLMIDTPTSPVTSGLPLFFVITVTAIKQGYEDWLRHNSDNEVNGAPVYVVRSG
GLVKTRSKNIRVGDIVRIAKDEIFPADLVLLSSDRLDGSCHVTTASLDGETNLKTHVAVP
ETALLQTVANLDTLVAVIECQQPEADLYRFMGRMIITQQMEEIVRSMNTFLIIYLVILIS
EAVISTILKYTWQAEEKWDEPWYNQKTEHQRNSSKILRFISDFLAFLVLYNFIIPISLYV
TVEMQKFLGSFFIGWDLDLYHEESDQKAQVNTSDLNEELGQVEYVFTDKTGTLTENEMQF
RECSINGMKYQEINGRLVPEGPTPDSSEGNLSYLSSLSHLNNLSHLTTSSSFRTSPENET
ELIKEHDLFFKAVSLCHTVQISNVQTDCTGDGPWQSNLAPSQLEYYASSPDEKALVEAAA
RYKLLHILEFDSDRRRMSVIVQAPSGEKLLFAKGAESSILPKCIGGEIEKTRIHVDEFAL
KGLRTLCIAYRKFTSKEYEEIDKRIFEARTALQQREEKLAAVFQFIEKDLILLGATAVED
RLQDKVRETIEALRMAGIKVWVLTGDKHETAVSVSLSCGHFHRTMNILELINQKSDSECA
EQLRQLARRPFLGSQNMYFVFIQLLSSGSAWFAIILMVVTCLFLDIIKKVFDRHLHPTST
EKAQMEEDKGSVSSAYEFAESQHRGEDSRHLLAEACSQQDSCCVH

>gi568815595f:182720259_183018101|GENSCAN_predicted_CDS_2|2658_bp
atgagggaagtatgtctgagggaatcaaccaccgaaagcagcacagagccagaaccccgc
ggcccccgcgccccgcgggacccggacggcgacgacgggggaatgtggcgctggatccgg
cagcagctggggaagcgaagaacctgtcttctgcccccactcgtcacggacttctggaag
cgtgtcacgatccagagctgtgttgattcccgaggaggaggctgtcgtaggtgtctagcc
ccctcagcgagagacgtttctccccaggacctggaaaggggaaagactgtgccagctgcc
ggtctagcttcggaaacgatacgtattacaatatgccgaatgttaaagtgtcttgaaggt
tcacttgcaactgtggaagtggaaatacagtcctctaagaataaagtttcagtgttcttg
ttacccgtgaaatcttttctaccagagggttttgacccaccacatcagagtgacacaaga
accatctacgtagccaacaggtttcctcagaatggcctttacacacctcagaaatttata
gataacaggatcatttcatctaagcttatgattgatacacctaccagtccagttaccagt
ggacttccattattctttgtgataacagtaactgccataaagcagggatatgaagattgg
ttacggcataactcagataatgaagtaaatggagctcctgtttatgttgttcgaagtggt
ggccttgtaaaaactagatcaaaaaacattcgggtgggtgatattgttcgaatagccaaa
gatgaaatttttcctgcagacttggtgcttctgtcctcagatcgactggatggttcctgt
cacgttacaactgctagtttggacggagaaactaacctgaagacacatgtggcagttcca
gaaacagcattattacaaacagttgccaatttggacactctagtagctgtaatagaatgc
cagcaaccagaagcagacttatacagattcatgggacgaatgatcataacccaacaaatg
gaagaaattgtaaggtcaatgaatacatttttgataatttatctagtaattcttatatct
gaagctgtcatcagcactatcttgaagtatacatggcaagctgaagaaaaatgggatgaa
ccttggtataaccaaaaaacagaacatcaaagaaatagcagtaagattctgagatttatt
tcagacttccttgcttttttggttctctacaatttcatcattccaatttcattatatgtg
acagtcgaaatgcagaaatttcttggatcattttttattggctgggatcttgatctgtat
catgaagaatcagatcagaaagctcaagtcaatacttccgatctgaatgaagagcttgga
caggtagagtacgtgtttacagataaaactggtacactgacagaaaatgagatgcagttt
cgggaatgttcaattaatggcatgaaataccaagaaattaatggtagacttgtacccgaa
ggaccaacaccagactcttcagaaggaaacttatcttatcttagtagtttatcccatctt
aacaacttatcccatcttacaaccagttcctctttcagaaccagtcctgaaaatgaaact
gaactaattaaagaacatgatctcttctttaaagcagtcagtctctgtcacactgtacag
attagcaatgttcaaactgactgcactggtgatggtccctggcaatccaacctggcacca
tcgcagttggagtactatgcatcttcaccagatgaaaaggctctagtagaagctgctgca
aggtacaaactgcttcatattctggaatttgattcagatcgtaggagaatgagtgtaatt
gttcaggcaccttcaggtgagaagttattatttgctaaaggagctgagtcatcaattctc
cctaaatgtataggtggagaaatagaaaaaaccagaattcatgtagatgaatttgctttg
aaagggctaagaactctgtgtatagcatatagaaaatttacatcaaaagagtatgaggaa
atagataaacgcatatttgaagccaggactgccttgcagcagcgggaagagaaattggca
gctgttttccagttcatagagaaagacctgatattacttggagccacagcagtagaagac
agactacaagataaagttcgagaaactattgaagcattgagaatggctggtatcaaagta
tgggtacttactggggataaacatgaaacagctgttagtgtgagtttatcatgtggccat
tttcatagaaccatgaacatccttgaacttataaaccagaaatcagacagcgagtgtgct
gaacaattgaggcagcttgccagaaggccatttttgggctcccagaatatgtattttgtg
tttattcagctcctgtcaagtggttctgcttggtttgccataatcctcatggttgttaca
tgtctatttcttgatatcataaagaaggtctttgaccgacacctccaccctacaagtact
gaaaaggcacagatggaagaagataagggttcagtcagctcagcatatgaatttgctgaa
agccagcacagaggggaggacagtaggcacctgctagctgaggcttgcagccagcaggac
agttgttgcgtgcactag

>gi568815595f:182720259_183018101|GENSCAN_predicted_peptide_3|464_aa
MDERFVAARNLPWYSAGRSQYMASSRKLGGLWELPKKFCCFACVDPAVVVRKEPRRKRRS
GAASSGRAGPPRTAHEREPGKPVRGAAAAAAVHSLRSRRRRGEAWRTPTCLSSYSPFLFG
GGKKSSPGLQTLVVELFTLVIKYLTLLDALRVSEALFGIVQSERELNSVQNKLKSSQKDK
VRQFMIFTQSSEKTAVSCLSQNDWKLDVATDNFFQNPELYIRESVKGSLDRKKLEQLYNR
YKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQEFMDGMTELGC
DSIEKLKAQIPKMEQELKEPGRFKDFYQFTFNFAKNPGQKGLDLEMAIAYWNLVLNGRFK
FLDLWNKFLLEHHKRSIPKDTWNLLLDFSTMIADDMSNYDEEGAWPVLIDDFVEFARPQI
AGTKISTPANQCSLPVGNVSGPAINQGQNADPYISVQLKSYRLH

>gi568815595f:182720259_183018101|GENSCAN_predicted_CDS_3|1395_bp
atggatgaacggtttgtggccgccagaaacctgccttggtacagcgctgggcgctcccag
tacatggctagctccaggaagttaggaggcctttgggagttaccaaagaagttctgttgt
tttgcctgcgtagacccggccgtggtcgtccggaaggaaccgcgtaggaaacggaggtcc
ggggctgcctcctcgggccgcgccgggccgccccgcactgcgcatgagcgggagccgggc
aagcccgtgagaggagccgccgccgccgccgccgtccattcgctgcggagccggaggagg
aggggagaggcctggaggacaccaacatgtttgtcaagttactctccttttttgtttggg
ggggggaaaaagtcctctccaggcttgcagacccttgtggtcgagttgtttactttggta
attaagtacctgactctgctggacgctcttcgcgtttcagaagcgctgtttggcattgta
cagtctgagcgtgagttgaattccgtgcagaacaagttgaaatcatcgcagaaggataaa
gttcgtcagtttatgatcttcacacaatctagtgaaaaaacagcagtaagttgtctttct
caaaatgactggaagttagatgttgcaacagataattttttccaaaatcctgaactttat
atacgagagagtgtaaaaggatcattggacaggaagaagttagaacagctgtacaataga
tacaaagaccctcaagatgagaataaaattggaatagatggcatacagcagttctgtgat
gacctggcactcgatccagccagcattagtgtgttgattattgcgtggaagttcagagca
gcaacacagtgcgagttctccaaacaggagttcatggatggcatgacagaattaggatgt
gacagcatagaaaaactaaaggcccagatacccaagatggaacaagaattgaaagaacca
ggacgatttaaggatttttaccagtttacttttaattttgcaaagaatccaggacaaaaa
ggattagatctagaaatggccattgcctactggaacttagtgcttaatggaagatttaaa
ttcttagacttatggaataaatttttgttggaacatcataaacgatcaataccaaaagac
acttggaatcttcttttagacttcagtacgatgattgcagatgacatgtctaattatgat
gaagaaggagcatggcctgttcttattgatgactttgtggaatttgcacgccctcaaatt
gctgggacaaaaatctccactccagccaaccaatgttccctgcctgtgggcaacgtgtcg
gggcctgccatcaatcagggtcagaatgctgacccctacatcagcgttcagcttaaatcc
taccgtctccattaa

>gi568815595f:182720259_183018101|GENSCAN_predicted_peptide_4|228_aa
MTASASEEASGNFSSWQKANWEQVPYMTGAEPSSVGRSSCKASLVVTNSLSVCMSEKVSK
KDLISPLLMQLSLARYEILGWNFFSLRMLHIGPQSLLACIHHSGGGNTAGDVQGASAGDC
ACGCAGGGVGLGAECWQAPIAMVISGGMGSGCIPTLAGRGMQNPPRQTRASKVMWGAAAD
PREAAVWVHASKNRRADTETRIEAMEEMRGRLAGILKLRELQMVMANH

>gi568815595f:182720259_183018101|GENSCAN_predicted_CDS_4|687_bp
atgacggcttctgcttctgaagaggcctcaggaaacttttcctcatggcagaaggcaaac
tgggagcaggtgccttacatgacaggagcagaaccaagcagtgtggggaggagctcttgt
aaggcaagtctggtggtaacaaattccctcagcgtttgcatgtctgaaaaggtgtccaaa
aaggatcttatttctcctttgcttatgcagcttagtttggccagatatgaaattctgggt
tggaatttcttttctttaagaatgttgcatattggcccccagtctcttctggcttgcatt
caccacagtggtggaggcaacacagctggggatgtgcagggggcctctgctggtgactgt
gcatgtggttgtgctggaggtggtgttggcttgggggcagaatgctggcaggctccgatt
gcaatggtgatcagtgggggaatgggaagtggctgcattcccacactggcagggcgagga
atgcaaaacccacccaggcagacacgtgccagcaaagtgatgtggggagctgccgcggac
cccagggaagctgcagtttgggtacacgcttctaagaaccgcagggcagatactgagacc
cgcatagaggcaatggaggaaatgagaggcaggcttgctgggatcttaaagttgagagag
cttcaaatggtgatggcgaatcactga

>gi568815595f:182720259_183018101|GENSCAN_predicted_peptide_5|177_aa
MWLCHLPNALVKSEAYSPNIQVKSETYSPNALVKSEAYRSNALVKSEAYSPNVQVKSETY
SPNVLVKSEAYSPNVLVKSEAYSPNVLVKSEAYSPNALVKSEAYRSNVLVKSEAYSPNVL
VKSEAYRSNALVKSEAYSPNALVKSEAYRSNALVKSEAYSPNALVKSEAYSPNVLVK

>gi568815595f:182720259_183018101|GENSCAN_predicted_CDS_5|534_bp
atgtggttgtgccatctgccaaatgcactggtcaaatcagaggcctacagcccaaatata
caggtcaaatctgagacctacagcccaaatgcactggtcaaatcagaggcctacaggtca
aatgcactggtcaaatcagaggcttacagcccaaatgtacaggtcaaatctgagacctac
agcccaaatgtactggtcaaatcagaggcctacagcccaaatgtactggtcaaatcagag
gcctacagcccaaatgtactggtcaaatcagaggcctacagcccaaatgcactggtcaaa
tcagaggcctacaggtcaaatgtactggtcaaatcagaggcctacagcccaaatgtactg
gtcaaatcagaggcctacaggtcaaatgcactggtcaaatcagaggcctacagcccaaat
gcactggtcaaatcagaggcctacaggtcaaatgcactggtcaaatcagaggcctacagc
ccaaatgcactggtcaaatcagaggcctacagcccaaatgtactcgtcaaataa