GENSCAN 1.0	Date run:  7-Nov-116	Time: 15:34:44

Sequence gi568815581f:45862338_46124168 : 261831 bp : 45.84% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1628   1765  138  1  0   64   81    34 0.453   0.96
 1.02 Term +   6273   6467  195  2  0  -12   55   192 0.512   3.31
 1.03 PlyA +   6719   6724    6                               1.05

 2.00 Prom +  22941  22980   40                              -2.86
 2.01 Init +  27321  27381   61  2  1  108   57    18 0.319   2.11
 2.02 Intr +  32186  32349  164  0  2   50  115   124 0.370  10.99
 2.03 Intr +  32434  32555  122  0  2  129   77   -14 0.615   0.89
 2.04 Intr +  33071  33236  166  2  1   29   57   143 0.626   5.26
 2.05 Intr +  52051  52184  134  0  2   22   84   101 0.039   2.54
 2.06 Intr +  67548  67639   92  0  2   42   82    62 0.024   0.64
 2.07 Intr +  73237  73375  139  2  1   74   55    62 0.083   1.02
 2.08 Intr +  74416  74499   84  1  0   49   89    78 0.118   2.94
 2.09 Intr +  78053  78143   91  2  1   69   63    41 0.066  -0.30
 2.10 Intr +  82149  82259  111  2  0   22   44   116 0.079   1.18
 2.11 Intr +  90633  90786  154  2  1   55   80   178 0.407  13.35
 2.12 Intr +  99303  99420  118  1  1   94   68    31 0.040   1.22
 2.13 Intr + 100000 100133  134  1  2   23   96    69 0.033   1.49
 2.14 Intr + 109522 109608   87  2  0   55   86    58 0.656   2.24
 2.15 Intr + 112048 112140   93  2  0   79   98    88 0.408   8.84
 2.16 Intr + 116038 116103   66  2  0   29   86    87 0.727   1.48
 2.17 Intr + 120478 121593 1116  2  0   45   66   575 0.477  40.66
 2.18 Intr + 127659 127738   80  1  2   66  116    24 0.442   2.27
 2.19 Intr + 129123 129249  127  2  1   91   99    53 0.998   6.95
 2.20 Intr + 134062 134327  266  2  2  127  100   313 0.984  33.63
 2.21 Intr + 147973 148065   93  0  0   77   65    58 0.782   2.56
 2.22 Intr + 149655 149681   27  2  0  112   85     2 0.600   0.61
 2.23 Intr + 151906 152002   97  0  1  143  100    56 0.980  11.88
 2.24 Intr + 156281 156393  113  0  2   75   98   133 0.969  13.10
 2.25 Intr + 161619 161826  208  2  1  142    9   313 0.836  27.45
 2.26 Term + 162161 162333  173  0  2   73   48   106 0.442   3.09
 2.27 PlyA + 165974 165979    6                               1.05

 3.13 PlyA - 167600 167595    6                               1.05
 3.12 Term - 169366 169139  228  1  0   53   53   151 0.916   4.73
 3.11 Intr - 169895 169710  186  2  0   60  110    50 0.700   4.29
 3.10 Intr - 171123 171066   58  2  1  115   80    40 0.969   4.79
 3.09 Intr - 171948 171824  125  0  2   80   75    53 0.941   2.58
 3.08 Intr - 176349 176201  149  1  2   83  123     0 0.811   2.95
 3.07 Intr - 176878 176690  189  2  0  103   97    85 0.997  10.46
 3.06 Intr - 177547 177365  183  2  0   99  100    82 0.930  10.26
 3.05 Intr - 188367 188196  172  0  1   91   95    83 0.865   8.82
 3.04 Intr - 204395 204200  196  1  1   46   71   149 0.694   8.42
 3.03 Intr - 205330 205212  119  1  2   95  113    -6 0.684   1.86
 3.02 Intr - 220205 220104  102  2  0  119  111    -2 0.800   5.57
 3.01 Intr - 232364 232223  142  1  1   82  116   113 0.969  13.86

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 240781 240790   10  0  1   64   96    -3 0.888  -1.22
S.002 Intr + 244998 245120  123  1  0   84  113   112 0.993  13.86


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581f:45862338_46124168|GENSCAN_predicted_peptide_1|110_aa
GLCPVVASTGKLFPQPQIAGSFLPCIAQLKVHLCREASLTVQSNNKSAGKVNPLDGYTVA
QHRTQCTHNAARQNPTFIPGPGNSIFEESPELKQLVKGLSTNYERGPGQD

>gi568815581f:45862338_46124168|GENSCAN_predicted_CDS_1|333_bp
ggcctttgtcctgtggtcgcctccactggcaagctcttcccacagcctcagatagctggc
tccttcttaccgtgcatagctcagcttaaagttcacctctgcagggaggcctccctgact
gtgcagagtaacaacaagtcagcaggcaaggtgaacccactggacggttacactgttgct
cagcacagaactcagtgtacccacaacgctgcacgccagaatcccaccttcataccaggt
ccaggtaacagcatctttgaggagagcccagagctgaagcaattagtcaaaggtttaagt
accaattatgagagaggccctggacaggactga

>gi568815581f:45862338_46124168|GENSCAN_predicted_peptide_2|1371_aa
MTGSLYPHLCQSLNVVSLQQGTRPLRRRAPSQSPPPTSSGTNSSAAATAHLLPPPPQPPS
PPPLSSPVLASVDYQTGASCAGHRSGPPQGPSLPPLLGGWGQGGLERDLSKGCTHADASS
AVPENSARIPLCTLAKAGFTWPGDVDGLGGRWSPFAGTHSRSHARMGAGLQKSGKHQDGT
GEISVASDGMERSVCTAAGAPQILWVSEKSSEEQGSGSLKFRLPGEQIMGIQFLQYPPSG
KPSSFLAESQWCHGSLGSRSPDAGSWPQISLIRALPECLVSTIAFDQWCPFAWQRPSPKG
VINDPHLDIFQSLLLFQANRRVLICELGNLDRIYPIGRSEDVLNYPKWLHRMRKWHRHIV
SPGFMGELQVQREAKQGALQAQLWARVGVTSQTPGNHNTYDDDDDDDDDDTYLKDCPEGS
QRCLQGTCMEQAPLLWQVLVVPSPLKRKSKLLGSSIDFFNEVERELGITSRAHLTCLTWM
AEPRQEFEVMEDHAGTYGLGDRKDQGGYTMHQDQEGDTDAGLKESPLQTPTEDGSEEPGS
ETSDAKSTPTAEDVTAPLVDEGAPGKQAAAQPHTEIPEGTTGEAEEAGIGDTPSLEDEAA
GHVTQAINAPLLTFCYRCLFKPEELRVPGRQRKAPERPLANEISAHVQPGPCGEASGVSG
PCLGEKEPEAPVPLTASLPQHRPVCPAPPPTGGPQEPSLEWGQKGGDWAEKGPAFPKPAT
TAYLHTEPESGKVVQEGFLREPGPPGLSHQLMSGMPGAPLLPEGPREATRQPSGTGPEDT
EGGRHAPELLKHQLLGDLHQEGPPLKGAGGKERPGSKEEVDEDRDVDESSPQDSPPSKAS
PAQDGRPPQTAAREATSIPGFPAEGAIPLPVDFLSKVSTEIPASEPDGPSVGRAKGQDAP
LEFTFHVEITPNVQKEQAHSEEHLGRAAFPGAPGEGPEARGPSLGEDTKEADLPEPSEKQ
PAAAPRGKPVSRVPQLKEPPSSPKYVSSVTSRTGSSGAKEMKLKGADGKTKIATPRGAAP
PGQKGQANATRIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPP
TREPKKVAVVRTPPKSPSSAKSRLQTAPVPMPDLKNVKSKIGSTENLKHQPGGGKVQIIN
KKLDLSNVQSKCGSKDNIKHVPGGGSFVCCEGTEEVQIVYKPVDLSKVTSKCGSLGNIHH
KPGSPVEGGGQVEVKSEKLDFKDRVQSKIGSLDNITHVPGGGNKKIETHKLTFRENAKAK
TDHGAEIVYKSPVVSGDTSPRHLSNVSSTGSIDMVDSPQLATLADEVSASLAKQEEGEGE
ALKAASGGFQGTGGANHLWPCCGGVTEAVAATKDLKLGVFVEPQADDVNLV

>gi568815581f:45862338_46124168|GENSCAN_predicted_CDS_2|4116_bp
atgactgggtctttatacccccacctctgtcagtcactcaacgtggtctccctgcaacaa
ggaacgcgccctcttcgccggcgcgcgccctcgcagtcaccgccacccaccagctccggc
accaacagcagcgccgctgccaccgcccaccttctgccgccgccaccacagccaccttct
cctcctccgctgtcctctcccgtcctcgcctctgtcgactatcagactggggcttcgtgc
gccgggcatcggtcggggccaccgcagggcccctccctgcctcccctgctcgggggctgg
ggccagggcggcctggaaagggacctgagcaagggatgcacgcacgcagacgcgagcagc
gccgtgcctgagaacagtgcgcggatcccactgtgcacgctcgcaaaggcagggttcacc
tggcctggcgatgtggacggactcggcggccgctggtccccgttcgcgggcacgcacagc
cgcagccacgcacggatgggcgcggggctgcagaagtctggaaaacatcaggatggaact
ggtgaaataagtgtggcctctgacggaatggagcggtccgtctgcactgctgcgggtgcc
cctcagatcctgtgggtcagtgagaaaagcagtgaggaacaaggcagtggatccctgaag
ttcaggctcccaggggagcagataatgggtatccagttcctgcaatatccaccctctggc
aagccaagttccttcctggctgagagccagtggtgccatggttccttagggagccggtcc
cctgatgccggctcctggccccaaatctctctgatccgggctcttccagaatgtcttgtc
tccaccatcgcctttgaccaatggtgtccctttgcctggcagaggccttcccccaagggc
gtcattaacgatccacatctggacatcttccaaagccttcttctgtttcaggccaaccgc
agagtcctcatctgtgagttggggaatctggacagaatctaccccatagggcgtagtgag
gatgtgttgaattatcccaagtggctacacagaatgcgcaagtggcatcgccacatcgtg
agtcctggcttcatgggtgagctccaggtccaacgagaagccaagcagggggcccttcaa
gctcagctttgggcccgggtcggggtaacttcccagactcctgggaatcataacacctat
gatgatgatgatgatgatgatgatgatgacacctacctcaaggattgccctgaagggtca
cagagatgcctgcaaggcacctgcatggagcaagcgccccttctctggcaggtgctggtc
gtgccctcaccgttaaagagaaagagcaaactgctgggcagcagcattgatttttttaat
gaagtggaaagagagctgggaataacaagtcgggcccacctcacctgcctcacctggatg
gctgagccccgccaggagttcgaagtgatggaagatcacgctgggacgtacgggttgggg
gacaggaaagatcaggggggctacaccatgcaccaagaccaagagggtgacacggacgct
ggcctgaaagaatctcccctgcagacccccactgaggacggatctgaggaaccgggctct
gaaacctctgatgctaagagcactccaacagcggaagatgtgacagcacccttagtggat
gagggagctcccggcaagcaggctgccgcgcagccccacacggagatcccagaaggaacc
acaggtgaggctgaagaagcaggcattggagacacccccagcctggaagacgaagctgct
ggtcacgtgacccaagcgattaatgcgcccttgctaaccttttgctatcgctgcctcttc
aaaccagaggagttgagagttccgggccggcagaggaaggcgcctgaaaggcccctggcc
aatgagattagcgcccacgtccagcctggaccctgcggagaggcctctggggtctctggg
ccgtgcctcggggagaaagagccagaagctcccgtcccgctgaccgcgagccttcctcag
caccgtcccgtttgcccagcgcctcctccaacaggaggccctcaggagccctccctggag
tggggacaaaaaggcggggactgggccgagaagggtccggcctttccgaagcccgccacc
actgcgtatctccacacagagcctgaaagtggtaaggtggtccaggaaggcttcctccga
gagccaggccccccaggtctgagccaccagctcatgtccggcatgcctggggctcccctc
ctgcctgagggccccagagaggccacacgccaaccttcggggacaggacctgaggacaca
gagggcggccgccacgcccctgagctgctcaagcaccagcttctaggagacctgcaccag
gaggggccgccgctgaagggggcagggggcaaagagaggccggggagcaaggaggaggtg
gatgaagaccgcgacgtcgatgagtcctccccccaagactcccctccctccaaggcctcc
ccagcccaagatgggcggcctccccagacagccgccagagaagccaccagcatcccaggc
ttcccagcggagggtgccatccccctccctgtggatttcctctccaaagtttccacagag
atcccagcctcagagcccgacgggcccagtgtagggcgggccaaagggcaggatgccccc
ctggagttcacgtttcacgtggaaatcacacccaacgtgcagaaggagcaggcgcactcg
gaggagcatttgggaagggctgcatttccaggggcccctggagaggggccagaggcccgg
ggcccctctttgggagaggacacaaaagaggctgaccttccagagccctctgaaaagcag
cctgctgctgctccgcgggggaagcccgtcagccgggtccctcaactcaaagagccacct
tcctctcctaaatacgtctcttctgtcacttcccgaactggcagttctggagcaaaggag
atgaaactcaagggggctgatggtaaaacgaagatcgccacaccgcggggagcagcccct
ccaggccagaagggccaggccaacgccaccaggattccagcaaaaaccccgcccgctcca
aagacaccacccagctctggtgaacctccaaaatcaggggatcgcagcggctacagcagc
cccggctccccaggcactcccggcagccgctcccgcaccccgtcccttccaaccccaccc
acccgggagcccaagaaggtggcagtggtccgtactccacccaagtcgccgtcttccgcc
aagagccgcctgcagacagcccccgtgcccatgccagacctgaagaatgtcaagtccaag
atcggctccactgagaacctgaagcaccagccgggaggcgggaaggtgcagataattaat
aagaagctggatcttagcaacgtccagtccaagtgtggctcaaaggataatatcaaacac
gtcccgggaggcggcagttttgtctgctgtgaggggacagaagaggtgcaaatagtctac
aaaccagttgacctgagcaaggtgacctccaagtgtggctcattaggcaacatccatcat
aaaccaggtagccctgtggaaggaggtggccaggtggaagtaaaatctgagaagcttgac
ttcaaggacagagtccagtcgaagattgggtccctggacaatatcacccacgtccctggc
ggaggaaataaaaagattgaaacccacaagctgaccttccgcgagaacgccaaagccaag
acagaccacggggcggagatcgtgtacaagtcgccagtggtgtctggggacacgtctcca
cggcatctcagcaatgtctcctccaccggcagcatcgacatggtagactcgccccagctc
gccacgctagctgacgaggtgtctgcctccctggccaagcaggaagagggagaaggagag
gctctgaaagctgcttctgggggatttcaagggactgggggtgccaaccacctctggccc
tgttgtgggggtgtcacagaggcagtggcagcaacaaaggatttgaaacttggtgtgttc
gtggagccacaggcagacgatgtcaaccttgtgtga

>gi568815581f:45862338_46124168|GENSCAN_predicted_peptide_3|616_aa
XRRRSEWKWAADRAAIVSRWNWLQAHVSDLEYRIRQQTDIYKQIRANKGLIVLGEVPPPE
HTTDLFLPLSSEVKTDHGTDKLIESVSQPLENHGAPIIGHISESLSTKSCGALRPVNGVI
NTLQPVLADHIPGDSSDAEEQLHKKQRLNLVSSSSDGTCVAARTRPVLSCKKRRLVRPNS
IVPLSKKVHRNSTIRPGCDVNPSCALCGSGSINTMPPEIHYEAPLLERLSQLDSCVHPVL
AFPDDVPTSLHFQSMLKSQWQNKPFDKIKPPKKLSLKHRAPMPGSLPDSARKDRHKLVSS
FLTTAKLSHHQTRPDRTHRQHLDDVGAVPMVERVTAPKAERLLNPPPPVHDPNHSKMRLR
DHSSERSEVLKHHTDMSSSSYLAATHHPPHSPLVRQLSTSSDSPAPASSSSQVTASTSQQ
PVRRRRGESSFDINNIVIPMSVAATTRVEKLQYKEILTPSWREVDLQSLKGSPDEENEEP
ASPDVSSSHSLSEYSHGQSPRSPISPELHSAPLTPVARDTPRHLASEDTRCSTPELGLDE
QSVQPWERRTFPLAHSPQAECEDQLDAQERAARCTRRTSGSKTGRETEAAPTSPPIVPLK
SRHLVAAATAQRPTHR

>gi568815581f:45862338_46124168|GENSCAN_predicted_CDS_3|1851_bp
nngagacgcaggtcagaatggaaatgggctgcagaccgggcagctattgtcagccgctgg
aactggcttcaggctcatgtttctgacttggaatatcgaattcgtcagcaaacagacatt
tacaaacagatacgtgctaataaggggttgatagttcttggggaggtacctcccccagag
catacaacagacttatttcttccacttagttctgaggtgaagacagatcatgggactgat
aaattgattgagtctgtttctcagccattggaaaaccatggtgcccctattattggtcat
atttcagagtcactgtctaccaaatcatgtggagcactcagacctgtcaatggagttatt
aacactcttcagcctgtcttggcagaccacattccaggtgacagctctgatgctgaggaa
caattacataagaagcaacgactgaatctcgtctcttcatcatctgatggcacctgtgtg
gcagcccggacacgtcctgtactgagctgtaagaagcggaggcttgttcgacccaacagc
atcgttcctctttccaagaaggttcaccggaacagcacaatccgccctggctgtgatgtg
aatccctcctgcgcactgtgtggttcaggcagcatcaacaccatgcctcccgaaattcac
tatgaagcccctctgttggaacgtctttcccagttggactcttgtgttcatcctgttcta
gcatttccagatgatgttcccacaagcctgcatttccagagcatgctgaaatctcagtgg
cagaacaagccttttgacaaaatcaaacctcccaaaaagttatcgcttaagcacagagca
cccatgccgggcagtctgccagattcagctcgtaaggacaggcacaaattggtcagctcc
ttcctaacaacagccaagctgtcccatcaccaaacccggcctgacaggacccacaggcag
cacttagacgatgtgggggccgtgcccatggtggagcgagtgacagcgccaaaagcagag
cgcttgctcaacccaccaccacccgtgcatgacccaaaccacagcaaaatgagattgcga
gaccattcatctgagagaagtgaagtgttgaagcatcacacagacatgagcagttcgagc
tacttggcagccacccaccatcctccacacagtcccttggtgcgacagctctccacctcc
tcagattcccctgcacccgccagctctagctcacaggttacagccagcacatcgcagcag
ccagtaaggaggagaaggggagagagctcatttgatattaacaacattgtcatcccaatg
tctgttgctgcaacaactcgcgtagagaaactgcaatacaaggaaatccttacgcccagc
tggcgggaggttgatcttcagtctctgaaggggagtcctgatgaggagaatgaagagcct
gcctcccctgatgtcagcagtagccactctttgtcagaatactcccatggtcagtcccct
aggagccccattagcccggaactgcactcagcacccctcacccctgtggctcgggacact
ccgcgacacttagccagtgaggatacccgttgttccacaccagagctggggctggatgaa
cagtctgtccagccctgggagcggcggaccttccccctggcgcacagtccccaggcggag
tgtgaggaccagctggatgcacaggagcgagcagcccgctgcactcgacgcacctcaggc
agcaagactggccgggagacagaggcagcgcccacctcgcctcccattgtccccctcaag
agtcggcatctggtggcagcagccacagctcagcgcccgactcacagatga