Result of FASTA (omim) for pF1KB6465
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6465, 322 aa
  1>>>pF1KB6465 322 - 322 aa - 322 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8718+/-0.000591; mu= -6.0113+/- 0.035
 mean_var=621.5585+/-148.843, 0's: 0 Z-trim(114.5): 207  B-trim: 33 in 1/53
 Lambda= 0.051444
 statistics sampled from 24155 (24362) to 24155 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.286), width:  16
 Scan time:  7.410

The best scores are:                                      opt bits E(85289)
NP_060962 (OMIM: 611210) lymphokine-activated kill ( 322) 2149 175.0 1.8e-43
XP_006716431 (OMIM: 611210) PREDICTED: lymphokine- ( 322) 2149 175.0 1.8e-43
NP_001265874 (OMIM: 611210) lymphokine-activated k ( 333) 1312 112.9 9.3e-25


>>NP_060962 (OMIM: 611210) lymphokine-activated killer T  (322 aa)
 initn: 2149 init1: 2149 opt: 2149  Z-score: 901.3  bits: 175.0 E(85289): 1.8e-43
Smith-Waterman score: 2149; 100.0% identity (100.0% similar) in 322 aa overlap (1-322:1-322)

               10        20        30        40        50        60
pF1KB6 MEGISNFKTPSKLSEKKKSVLCSTPTINIPASPFMQKLGFGTGVNVYLMKRSPRGLSHSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MEGISNFKTPSKLSEKKKSVLCSTPTINIPASPFMQKLGFGTGVNVYLMKRSPRGLSHSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 WAVKKINPICNDHYRSVYQKRLMDEAKILKSLHHPNIVGYRAFTEANDGSLCLAMEYGGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 WAVKKINPICNDHYRSVYQKRLMDEAKILKSLHHPNIVGYRAFTEANDGSLCLAMEYGGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KSLNDLIEERYKASQDPFPAAIILKVALNMARGLKYLHQEKKLLHGDIKSSNVVIKGDFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KSLNDLIEERYKASQDPFPAAIILKVALNMARGLKYLHQEKKLLHGDIKSSNVVIKGDFE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TIKICDVGVSLPLDENMTVTDPEACYIGTEPWKPKEAVEENGVITDKADIFAFGLTLWEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TIKICDVGVSLPLDENMTVTDPEACYIGTEPWKPKEAVEENGVITDKADIFAFGLTLWEM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 MTLSIPHINLSNDDDDEDKTFDESDFDDEAYYAALGTRPPINMEELDESYQKVIELFSVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MTLSIPHINLSNDDDDEDKTFDESDFDDEAYYAALGTRPPINMEELDESYQKVIELFSVC
              250       260       270       280       290       300

              310       320  
pF1KB6 TNEDPKDRPSAAHIVEALETDV
       ::::::::::::::::::::::
NP_060 TNEDPKDRPSAAHIVEALETDV
              310       320  

>>XP_006716431 (OMIM: 611210) PREDICTED: lymphokine-acti  (322 aa)
 initn: 2149 init1: 2149 opt: 2149  Z-score: 901.3  bits: 175.0 E(85289): 1.8e-43
Smith-Waterman score: 2149; 100.0% identity (100.0% similar) in 322 aa overlap (1-322:1-322)

               10        20        30        40        50        60
pF1KB6 MEGISNFKTPSKLSEKKKSVLCSTPTINIPASPFMQKLGFGTGVNVYLMKRSPRGLSHSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MEGISNFKTPSKLSEKKKSVLCSTPTINIPASPFMQKLGFGTGVNVYLMKRSPRGLSHSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 WAVKKINPICNDHYRSVYQKRLMDEAKILKSLHHPNIVGYRAFTEANDGSLCLAMEYGGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WAVKKINPICNDHYRSVYQKRLMDEAKILKSLHHPNIVGYRAFTEANDGSLCLAMEYGGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KSLNDLIEERYKASQDPFPAAIILKVALNMARGLKYLHQEKKLLHGDIKSSNVVIKGDFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KSLNDLIEERYKASQDPFPAAIILKVALNMARGLKYLHQEKKLLHGDIKSSNVVIKGDFE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TIKICDVGVSLPLDENMTVTDPEACYIGTEPWKPKEAVEENGVITDKADIFAFGLTLWEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TIKICDVGVSLPLDENMTVTDPEACYIGTEPWKPKEAVEENGVITDKADIFAFGLTLWEM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 MTLSIPHINLSNDDDDEDKTFDESDFDDEAYYAALGTRPPINMEELDESYQKVIELFSVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MTLSIPHINLSNDDDDEDKTFDESDFDDEAYYAALGTRPPINMEELDESYQKVIELFSVC
              250       260       270       280       290       300

              310       320  
pF1KB6 TNEDPKDRPSAAHIVEALETDV
       ::::::::::::::::::::::
XP_006 TNEDPKDRPSAAHIVEALETDV
              310       320  

>>NP_001265874 (OMIM: 611210) lymphokine-activated kille  (333 aa)
 initn: 1312 init1: 1312 opt: 1312  Z-score: 565.4  bits: 112.9 E(85289): 9.3e-25
Smith-Waterman score: 2117; 96.7% identity (96.7% similar) in 333 aa overlap (1-322:1-333)

               10        20        30        40        50        60
pF1KB6 MEGISNFKTPSKLSEKKKSVLCSTPTINIPASPFMQKLGFGTGVNVYLMKRSPRGLSHSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEGISNFKTPSKLSEKKKSVLCSTPTINIPASPFMQKLGFGTGVNVYLMKRSPRGLSHSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 WAVKKINPICNDHYRSVYQKRLMDEAKILKSLHHPNIVGYRAFTEANDGSLCLAMEYGGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WAVKKINPICNDHYRSVYQKRLMDEAKILKSLHHPNIVGYRAFTEANDGSLCLAMEYGGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KSLNDLIEERYKASQDPFPAAIILKVALNMARGLKYLHQEKKLLHGDIKSSNVVIKGDFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSLNDLIEERYKASQDPFPAAIILKVALNMARGLKYLHQEKKLLHGDIKSSNVVIKGDFE
              130       140       150       160       170       180

              190                  200       210       220         
pF1KB6 TIKICDVGVSLPLDENMT-----------VTDPEACYIGTEPWKPKEAVEENGVITDKAD
       ::::::::::::::::::           :::::::::::::::::::::::::::::::
NP_001 TIKICDVGVSLPLDENMTAPAFITILLVSVTDPEACYIGTEPWKPKEAVEENGVITDKAD
              190       200       210       220       230       240

     230       240       250       260       270       280         
pF1KB6 IFAFGLTLWEMMTLSIPHINLSNDDDDEDKTFDESDFDDEAYYAALGTRPPINMEELDES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IFAFGLTLWEMMTLSIPHINLSNDDDDEDKTFDESDFDDEAYYAALGTRPPINMEELDES
              250       260       270       280       290       300

     290       300       310       320  
pF1KB6 YQKVIELFSVCTNEDPKDRPSAAHIVEALETDV
       :::::::::::::::::::::::::::::::::
NP_001 YQKVIELFSVCTNEDPKDRPSAAHIVEALETDV
              310       320       330   




322 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:00:49 2016 done: Sat Nov  5 08:00:51 2016
 Total Scan time:  7.410 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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