FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6154, 642 aa
  1>>>pF1KB6154 642 - 642 aa - 642 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.3727+/-0.000705; mu= -8.6969+/- 0.043
 mean_var=446.2292+/-92.106, 0's: 0 Z-trim(113.7): 70  B-trim: 447 in 2/53
 Lambda= 0.060715
 statistics sampled from 23184 (23238) to 23184 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.272), width:  16
 Scan time: 10.120

The best scores are:                                      opt bits E(85289)
NP_006092 (OMIM: 607272) kinetochore protein NDC80 ( 642) 4137 378.1 5.5e-104


>>NP_006092 (OMIM: 607272) kinetochore protein NDC80 hom  (642 aa)
 initn: 4137 init1: 4137 opt: 4137  Z-score: 1987.9  bits: 378.1 E(85289): 5.5e-104
Smith-Waterman score: 4137; 100.0% identity (100.0% similar) in 642 aa overlap (1-642:1-642)

               10        20        30        40        50        60
pF1KB6 MKRSSVSSGGAGRLSMQELRSQDVNKQGLYTPQTKEKPTFGKLSINKPTSERKVSLFGKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MKRSSVSSGGAGRLSMQELRSQDVNKQGLYTPQTKEKPTFGKLSINKPTSERKVSLFGKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TSGHGSRNSQLGIFSSSEKIKDPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TSGHGSRNSQLGIFSSSEKIKDPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 IVAALVWLIDCIKIHTAMKESSPLFDDGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 IVAALVWLIDCIKIHTAMKESSPLFDDGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 DSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 ASLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELECETIKQENTRLQNIIDNQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ASLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELECETIKQENTRLQNIIDNQK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 YSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLAR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 KLKLIPKGAENSKGYDFEIKFNPEAGANCLVKYRAQVYVPLKELLNETEEEINKALNKKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KLKLIPKGAENSKGYDFEIKFNPEAGANCLVKYRAQVYVPLKELLNETEEEINKALNKKM
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 GLEDTLEQLNAMITESKRSVRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELESLEKHKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GLEDTLEQLNAMITESKRSVRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELESLEKHKH
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB6 LLESTVNQGLSEAMNELDAVQREYQLVVQTTTEERRKVGNNLQRLLEMVATHVGSVEKHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LLESTVNQGLSEAMNELDAVQREYQLVVQTTTEERRKVGNNLQRLLEMVATHVGSVEKHL
              550       560       570       580       590       600

              610       620       630       640  
pF1KB6 EEQIAKVDREYEECMSEDLSENIKEIRDKYEKKATLIKSSEE
       ::::::::::::::::::::::::::::::::::::::::::
NP_006 EEQIAKVDREYEECMSEDLSENIKEIRDKYEKKATLIKSSEE
              610       620       630       640  




642 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:50:22 2016 done: Sat Nov  5 07:50:23 2016
 Total Scan time: 10.120 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]