Result of FASTA (ccds) for pF1KE1052
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1052, 375 aa
  1>>>pF1KE1052 375 - 375 aa - 375 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3005+/-0.000897; mu= 11.8779+/- 0.054
 mean_var=91.7667+/-17.990, 0's: 0 Z-trim(106.7): 41  B-trim: 0 in 0/54
 Lambda= 0.133885
 statistics sampled from 9129 (9157) to 9129 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.281), width:  16
 Scan time:  2.710

The best scores are:                                      opt bits E(32554)
CCDS6003.1 PDGFRL gene_id:5157|Hs108|chr8          ( 375) 2501 493.3 1.4e-139
CCDS53861.1 FLT1 gene_id:2321|Hs108|chr13          ( 541)  347 77.4 3.4e-14
CCDS73556.1 FLT1 gene_id:2321|Hs108|chr13          ( 687)  347 77.4 4.2e-14
CCDS53860.1 FLT1 gene_id:2321|Hs108|chr13          ( 733)  347 77.4 4.4e-14
CCDS9330.1 FLT1 gene_id:2321|Hs108|chr13           (1338)  347 77.6 7.3e-14


>>CCDS6003.1 PDGFRL gene_id:5157|Hs108|chr8               (375 aa)
 initn: 2501 init1: 2501 opt: 2501  Z-score: 2619.3  bits: 493.3 E(32554): 1.4e-139
Smith-Waterman score: 2501; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:1-375)

               10        20        30        40        50        60
pF1KE1 MKVWLLLGLLLVHEALEDVTGQHLPKNKRPKEPGENRIKPTNKKVKPKIPKMKDRDSANS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MKVWLLLGLLLVHEALEDVTGQHLPKNKRPKEPGENRIKPTNKKVKPKIPKMKDRDSANS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 APKTQSIMMQVLDKGRFQKPAATLSLLAGQTVELRCKGSRIGWSYPAYLDTFKDSRLSVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 APKTQSIMMQVLDKGRFQKPAATLSLLAGQTVELRCKGSRIGWSYPAYLDTFKDSRLSVK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 QNERYGQLTLVNSTSADTGEFSCWVQLCSGYICRKDEAKTGSTYIFFTEKGELFVPSPSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 QNERYGQLTLVNSTSADTGEFSCWVQLCSGYICRKDEAKTGSTYIFFTEKGELFVPSPSY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 FDVVYLNPDRQAVVPCRVTVLSAKVTLHREFPAKEIPANGTDIVYDMKRGFVYLQPHSEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 FDVVYLNPDRQAVVPCRVTVLSAKVTLHREFPAKEIPANGTDIVYDMKRGFVYLQPHSEH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 QGVVYCRAEAGGRSQISVKYQLLYVAVPSGPPSTTILASSNKVKSGDDISVLCTVLGEPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 QGVVYCRAEAGGRSQISVKYQLLYVAVPSGPPSTTILASSNKVKSGDDISVLCTVLGEPD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 VEVEFTWIFPGQKDERPVTIQDTWRLIHRGLGHTTRISQSVITVEDFETIDAGYYICTAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VEVEFTWIFPGQKDERPVTIQDTWRLIHRGLGHTTRISQSVITVEDFETIDAGYYICTAQ
              310       320       330       340       350       360

              370     
pF1KE1 NLQGQTTVATTVEFS
       :::::::::::::::
CCDS60 NLQGQTTVATTVEFS
              370     

>>CCDS53861.1 FLT1 gene_id:2321|Hs108|chr13               (541 aa)
 initn: 267 init1:  80 opt: 347  Z-score: 368.3  bits: 77.4 E(32554): 3.4e-14
Smith-Waterman score: 347; 26.0% identity (58.7% similar) in 300 aa overlap (86-372:43-326)

          60        70        80        90       100        110    
pF1KE1 DSANSAPKTQSIMMQVLDKGRFQKPAATLSLLAGQTVELRCKGSRIG-WSYPAYLDTFKD
                                     . ::::..:.:.:     :: : ...  ..
CCDS53 ALLSCLLLTGSSSGSKLKDPELSLKGTQHIMQAGQTLHLQCRGEAAHKWSLPEMVSK-ES
             20        30        40        50        60         70 

          120              130       140       150       160       
pF1KE1 SRLSVKQNE--RYGQ-----LTLVNSTSADTGEFSCWVQLCSGYICRKDEAKTGSTYIFF
        :::. ..   : :.     ::: .. .  :: .::  .  .    .: :... . :::.
CCDS53 ERLSITKSACGRNGKQFCSTLTLNTAQANHTGFYSC--KYLAVPTSKKKETES-AIYIFI
              80        90       100         110       120         

       170       180        190       200       210       220      
pF1KE1 TEKGELFVPSPSYF-DVVYLNPDRQAVVPCRVTVLSAKVTLHREFPAKEIPANGTDIVYD
       .. :. ::   : . ......  :. :.:::::  .  ::: ..::   .  .:  :..:
CCDS53 SDTGRPFVEMYSEIPEIIHMTEGRELVIPCRVTSPNITVTL-KKFPLDTLIPDGKRIIWD
      130       140       150       160        170       180       

        230       240       250           260       270       280  
pF1KE1 MKRGFVYLQPHSEHQGVVYCRAEAGGR----SQISVKYQLLYVAVPSGPPSTTILASSNK
        ..::.  .   .. :.. :.: ..:.    . .. .     . :  . :  .      :
CCDS53 SRKGFIISNATYKEIGLLTCEATVNGHLYKTNYLTHRQTNTIIDVQISTPRPV------K
       190       200       210       220       230       240       

            290       300       310       320       330       340  
pF1KE1 VKSGDDISVLCTVLGEPDVEVEFTWIFPGQKDERPVTIQDTWRLIHRGLGHTTRISQSVI
       .  :  . . ::.    ...:..:: .: .:..: ....   : : .. .:.. :  ::.
CCDS53 LLRGHTLVLNCTATTPLNTRVQMTWSYPDEKNKR-ASVR---RRIDQSNSHAN-IFYSVL
             250       260       270           280       290       

            350       360       370                                
pF1KE1 TVEDFETIDAGYYICTAQNLQGQTTVATTVEFS                           
       :.. ... : : : : ...  .  .: :.:                              
CCDS53 TIDKMQNKDKGLYTCRVRSGPSFKSVNTSVHIYDKAFITVKHRKQQVLETVAGKRSYRLS
        300       310       320       330       340       350      

>>CCDS73556.1 FLT1 gene_id:2321|Hs108|chr13               (687 aa)
 initn: 267 init1:  80 opt: 347  Z-score: 366.8  bits: 77.4 E(32554): 4.2e-14
Smith-Waterman score: 347; 26.0% identity (58.7% similar) in 300 aa overlap (86-372:43-326)

          60        70        80        90       100        110    
pF1KE1 DSANSAPKTQSIMMQVLDKGRFQKPAATLSLLAGQTVELRCKGSRIG-WSYPAYLDTFKD
                                     . ::::..:.:.:     :: : ...  ..
CCDS73 ALLSCLLLTGSSSGSKLKDPELSLKGTQHIMQAGQTLHLQCRGEAAHKWSLPEMVSK-ES
             20        30        40        50        60         70 

          120              130       140       150       160       
pF1KE1 SRLSVKQNE--RYGQ-----LTLVNSTSADTGEFSCWVQLCSGYICRKDEAKTGSTYIFF
        :::. ..   : :.     ::: .. .  :: .::  .  .    .: :... . :::.
CCDS73 ERLSITKSACGRNGKQFCSTLTLNTAQANHTGFYSC--KYLAVPTSKKKETES-AIYIFI
              80        90       100         110       120         

       170       180        190       200       210       220      
pF1KE1 TEKGELFVPSPSYF-DVVYLNPDRQAVVPCRVTVLSAKVTLHREFPAKEIPANGTDIVYD
       .. :. ::   : . ......  :. :.:::::  .  ::: ..::   .  .:  :..:
CCDS73 SDTGRPFVEMYSEIPEIIHMTEGRELVIPCRVTSPNITVTL-KKFPLDTLIPDGKRIIWD
      130       140       150       160        170       180       

        230       240       250           260       270       280  
pF1KE1 MKRGFVYLQPHSEHQGVVYCRAEAGGR----SQISVKYQLLYVAVPSGPPSTTILASSNK
        ..::.  .   .. :.. :.: ..:.    . .. .     . :  . :  .      :
CCDS73 SRKGFIISNATYKEIGLLTCEATVNGHLYKTNYLTHRQTNTIIDVQISTPRPV------K
       190       200       210       220       230       240       

            290       300       310       320       330       340  
pF1KE1 VKSGDDISVLCTVLGEPDVEVEFTWIFPGQKDERPVTIQDTWRLIHRGLGHTTRISQSVI
       .  :  . . ::.    ...:..:: .: .:..: ....   : : .. .:.. :  ::.
CCDS73 LLRGHTLVLNCTATTPLNTRVQMTWSYPDEKNKR-ASVR---RRIDQSNSHAN-IFYSVL
             250       260       270           280       290       

            350       360       370                                
pF1KE1 TVEDFETIDAGYYICTAQNLQGQTTVATTVEFS                           
       :.. ... : : : : ...  .  .: :.:                              
CCDS73 TIDKMQNKDKGLYTCRVRSGPSFKSVNTSVHIYDKAFITVKHRKQQVLETVAGKRSYRLS
        300       310       320       330       340       350      

>>CCDS53860.1 FLT1 gene_id:2321|Hs108|chr13               (733 aa)
 initn: 267 init1:  80 opt: 347  Z-score: 366.3  bits: 77.4 E(32554): 4.4e-14
Smith-Waterman score: 347; 26.0% identity (58.7% similar) in 300 aa overlap (86-372:43-326)

          60        70        80        90       100        110    
pF1KE1 DSANSAPKTQSIMMQVLDKGRFQKPAATLSLLAGQTVELRCKGSRIG-WSYPAYLDTFKD
                                     . ::::..:.:.:     :: : ...  ..
CCDS53 ALLSCLLLTGSSSGSKLKDPELSLKGTQHIMQAGQTLHLQCRGEAAHKWSLPEMVSK-ES
             20        30        40        50        60         70 

          120              130       140       150       160       
pF1KE1 SRLSVKQNE--RYGQ-----LTLVNSTSADTGEFSCWVQLCSGYICRKDEAKTGSTYIFF
        :::. ..   : :.     ::: .. .  :: .::  .  .    .: :... . :::.
CCDS53 ERLSITKSACGRNGKQFCSTLTLNTAQANHTGFYSC--KYLAVPTSKKKETES-AIYIFI
              80        90       100         110       120         

       170       180        190       200       210       220      
pF1KE1 TEKGELFVPSPSYF-DVVYLNPDRQAVVPCRVTVLSAKVTLHREFPAKEIPANGTDIVYD
       .. :. ::   : . ......  :. :.:::::  .  ::: ..::   .  .:  :..:
CCDS53 SDTGRPFVEMYSEIPEIIHMTEGRELVIPCRVTSPNITVTL-KKFPLDTLIPDGKRIIWD
      130       140       150       160        170       180       

        230       240       250           260       270       280  
pF1KE1 MKRGFVYLQPHSEHQGVVYCRAEAGGR----SQISVKYQLLYVAVPSGPPSTTILASSNK
        ..::.  .   .. :.. :.: ..:.    . .. .     . :  . :  .      :
CCDS53 SRKGFIISNATYKEIGLLTCEATVNGHLYKTNYLTHRQTNTIIDVQISTPRPV------K
       190       200       210       220       230       240       

            290       300       310       320       330       340  
pF1KE1 VKSGDDISVLCTVLGEPDVEVEFTWIFPGQKDERPVTIQDTWRLIHRGLGHTTRISQSVI
       .  :  . . ::.    ...:..:: .: .:..: ....   : : .. .:.. :  ::.
CCDS53 LLRGHTLVLNCTATTPLNTRVQMTWSYPDEKNKR-ASVR---RRIDQSNSHAN-IFYSVL
             250       260       270           280       290       

            350       360       370                                
pF1KE1 TVEDFETIDAGYYICTAQNLQGQTTVATTVEFS                           
       :.. ... : : : : ...  .  .: :.:                              
CCDS53 TIDKMQNKDKGLYTCRVRSGPSFKSVNTSVHIYDKAFITVKHRKQQVLETVAGKRSYRLS
        300       310       320       330       340       350      

>>CCDS9330.1 FLT1 gene_id:2321|Hs108|chr13                (1338 aa)
 initn: 267 init1:  80 opt: 347  Z-score: 362.4  bits: 77.6 E(32554): 7.3e-14
Smith-Waterman score: 347; 26.0% identity (58.7% similar) in 300 aa overlap (86-372:43-326)

          60        70        80        90       100        110    
pF1KE1 DSANSAPKTQSIMMQVLDKGRFQKPAATLSLLAGQTVELRCKGSRIG-WSYPAYLDTFKD
                                     . ::::..:.:.:     :: : ...  ..
CCDS93 ALLSCLLLTGSSSGSKLKDPELSLKGTQHIMQAGQTLHLQCRGEAAHKWSLPEMVSK-ES
             20        30        40        50        60         70 

          120              130       140       150       160       
pF1KE1 SRLSVKQNE--RYGQ-----LTLVNSTSADTGEFSCWVQLCSGYICRKDEAKTGSTYIFF
        :::. ..   : :.     ::: .. .  :: .::  .  .    .: :... . :::.
CCDS93 ERLSITKSACGRNGKQFCSTLTLNTAQANHTGFYSC--KYLAVPTSKKKETES-AIYIFI
              80        90       100         110       120         

       170       180        190       200       210       220      
pF1KE1 TEKGELFVPSPSYF-DVVYLNPDRQAVVPCRVTVLSAKVTLHREFPAKEIPANGTDIVYD
       .. :. ::   : . ......  :. :.:::::  .  ::: ..::   .  .:  :..:
CCDS93 SDTGRPFVEMYSEIPEIIHMTEGRELVIPCRVTSPNITVTL-KKFPLDTLIPDGKRIIWD
      130       140       150       160        170       180       

        230       240       250           260       270       280  
pF1KE1 MKRGFVYLQPHSEHQGVVYCRAEAGGR----SQISVKYQLLYVAVPSGPPSTTILASSNK
        ..::.  .   .. :.. :.: ..:.    . .. .     . :  . :  .      :
CCDS93 SRKGFIISNATYKEIGLLTCEATVNGHLYKTNYLTHRQTNTIIDVQISTPRPV------K
       190       200       210       220       230       240       

            290       300       310       320       330       340  
pF1KE1 VKSGDDISVLCTVLGEPDVEVEFTWIFPGQKDERPVTIQDTWRLIHRGLGHTTRISQSVI
       .  :  . . ::.    ...:..:: .: .:..: ....   : : .. .:.. :  ::.
CCDS93 LLRGHTLVLNCTATTPLNTRVQMTWSYPDEKNKR-ASVR---RRIDQSNSHAN-IFYSVL
             250       260       270           280       290       

            350       360       370                                
pF1KE1 TVEDFETIDAGYYICTAQNLQGQTTVATTVEFS                           
       :.. ... : : : : ...  .  .: :.:                              
CCDS93 TIDKMQNKDKGLYTCRVRSGPSFKSVNTSVHIYDKAFITVKHRKQQVLETVAGKRSYRLS
        300       310       320       330       340       350      




375 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:49:47 2016 done: Sat Nov  5 07:49:48 2016
 Total Scan time:  2.710 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com