GENSCAN 1.0	Date run:  5-Nov-116	Time: 01:58:18

Sequence gi568815588f:112850757_113265631 : 414875 bp : 44.19% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1737   1793   57  2  0   93   59    51 0.288   4.01
 1.02 Intr +   6982   7094  113  0  2   71   37    74 0.121  -0.22
 1.03 Intr +  32087  32207  121  2  1  109   42    57 0.012   3.70
 1.04 Intr +  48197  48271   75  1  0   96   48    64 0.386   2.91
 1.05 Term +  68201  68407  207  1  0   86   48   173 0.992  10.44
 1.06 PlyA +  70153  70158    6                               1.05

 2.00 Prom +  86061  86100   40                              -2.96
 2.01 Init + 100001 100189  189  1  0   65   75   231 0.608  18.51
 2.02 Intr + 100451 100517   67  1  1   31  113    35 0.509  -1.22
 2.03 Intr + 100727 100851  125  0  2   35  103   114 0.837   7.90
 2.04 Term + 101606 101695   90  1  0   84   48    28 0.175  -3.88
 2.05 PlyA + 102710 102715    6                               1.05

 3.05 PlyA - 103249 103244    6                               1.05
 3.04 Term - 114073 113928  146  2  2  122   41   211 0.917  17.87
 3.03 Intr - 126875 126746  130  2  1   87   91   -15 0.225  -1.03
 3.02 Intr - 130462 130323  140  2  2   33   91    80 0.510   2.98
 3.01 Init - 136368 136362    7  0  1   55  123    12 0.506   1.74
 3.00 Prom - 136628 136589   40                              -4.36

 4.00 Prom + 138090 138129   40                              -3.46
 4.01 Init + 138132 138186   55  2  1   74   97    43 0.461   5.25
 4.02 Intr + 171060 171176  117  1  0   75  107    44 0.209   5.44
 4.03 Term + 185185 185435  251  2  2   60   43   236 0.114  12.17
 4.04 PlyA + 190567 190572    6                               1.05

 5.07 PlyA - 191080 191075    6                               1.05
 5.06 Term - 199526 199450   77  0  2   99   42    53 0.789  -0.20
 5.05 Intr - 201370 201245  126  2  0   74  108    47 0.782   5.95
 5.04 Intr - 208871 208808   64  2  1   77   58    32 0.015  -2.61
 5.03 Intr - 219178 219006  173  2  2   91   48   115 0.113   7.46
 5.02 Intr - 238978 238856  123  2  0   95   82    43 0.840   4.96
 5.01 Init - 239328 239271   58  0  1   48   96    40 0.789   2.29
 5.00 Prom - 247658 247619   40                              -6.06

 6.00 Prom + 250405 250444   40                               0.94
 6.01 Init + 264501 264506    6  2  0   74  100    10 0.790   1.11
 6.02 Term + 270533 270661  129  1  0  121   53    81 0.960   6.08
 6.03 PlyA + 271852 271857    6                               1.05

 7.00 Prom + 272170 272209   40                              -5.46
 7.01 Init + 274815 274958  144  2  0   48   33   102 0.015   0.82
 7.02 Intr + 290428 290560  133  0  1  112   96    64 0.813   9.82
 7.03 Intr + 292367 292491  125  0  2   53   80    32 0.432  -0.80
 7.04 Intr + 293167 293228   62  0  2  120   16    38 0.407  -2.67
 7.05 Intr + 295255 295341   87  1  0   85  109    87 0.957   9.59
 7.06 Intr + 300242 300367  126  2  0  118   88    -8 0.782   1.99
 7.07 Intr + 300969 301128  160  0  1   70   73   132 0.991   9.89
 7.08 Intr + 301577 301684  108  1  0   87   42   125 0.610   8.28
 7.09 Intr + 306885 307196  312  2  0   77   85    68 0.175   1.78
 7.10 Intr + 307265 307313   49  1  1   89  115    62 0.959   7.25
 7.11 Intr + 309164 309236   73  0  1   76   89    35 0.713   0.86
 7.12 Term + 314799 315216  418  0  1  104   33   194 0.885  10.25
 7.13 PlyA + 316594 316599    6                               1.05

 8.00 Prom + 320406 320445   40                              -0.46
 8.01 Init + 326186 326245   60  1  0   74   80    18 0.337   0.85
 8.02 Intr + 326789 326894  106  1  1   49   55    62 0.393  -1.21
 8.03 Term + 328106 328161   56  0  2  116   40    67 0.531   2.42
 8.04 PlyA + 328550 328555    6                              -0.45

 9.04 PlyA - 329630 329625    6                               1.05
 9.03 Term - 332533 332379  155  2  2   66   39    93 0.704   0.28
 9.02 Intr - 334902 334800  103  0  1  -18   90   152 0.748   4.55
 9.01 Init - 344067 343993   75  0  0   82   93    30 0.278   3.99
 9.00 Prom - 345478 345439   40                              -6.76

10.05 PlyA - 345943 345938    6                               1.05
10.04 Term - 351307 351195  113  2  2   93   49   113 0.892   6.62
10.03 Intr - 379497 379399   99  1  0  117   75    46 0.026   6.28
10.02 Intr - 393084 392968  117  1  0  104   62    68 0.846   6.24
10.01 Intr - 413778 413665  114  1  0  104   86    22 0.147   4.02

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  18177  18150   28  2  1  148   42    16 0.916   0.55
S.002 Term +  93503  93618  116  0  2  131   53    91 0.802   8.63


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588f:112850757_113265631|GENSCAN_predicted_peptide_1|190_aa
MGPTKEEAASLDREVKAPEHMGTDSTVKIHAANRQVTGGSGEENARTATDSFPLRESSSS
TKHKSPALALVKAMNVKGVYGHTLTHSSLHSWDSTCRASLVPAARIYTDVNLAISTSRSG
KEVEQSEPLTTGLERKILKSFDPALRGAFYQELEGTFQGVNPFDRKYKMQDLQGTKRMQY
MNLEKMMMMK

>gi568815588f:112850757_113265631|GENSCAN_predicted_CDS_1|573_bp
atggggcccactaaagaggaagccgcaagtctggacagagaagtgaaggctcctgagcac
atggggactgatagtacggtgaagatccacgcagcaaataggcaggtgactggggggagt
ggagaggagaatgcccgcacagccacagacagcttcccactcagagaaagttcctcctcc
accaagcacaaatctccagccctggccctagtaaaggccatgaatgtaaaaggtgtttat
ggtcatactctcactcactcatctcttcattcttgggattctacctgcagagcctcatta
gtgcccgcagctcggatttacacagatgtaaatctggccattagcacctcacgctctggc
aaggaggtggagcagtcagagcccctaaccactggcttggaaagaaaaatcctgaagtca
tttgatccagctctaagaggtgcattctaccaggaactagaaggcaccttccagggagtt
aacccttttgatcgcaagtacaaaatgcaagaccttcaaggcactaagaggatgcaatat
atgaacttggaaaagatgatgatgatgaaatga

>gi568815588f:112850757_113265631|GENSCAN_predicted_peptide_2|156_aa
MPQLNGGGGDDLGANDELISFKDEGEQEEKSSENSSAERDLADVKSSLVNESETNQNSSS
DSEAERRPPPRSESFRDKSRESLEEAAKRQDGGLFKGPPYPGYPFIMIPDLTSPYLPNGS
LSPTARTGRERPGRRGGLRCPAHWLRALPGRAGQQG

>gi568815588f:112850757_113265631|GENSCAN_predicted_CDS_2|471_bp
atgccgcagctgaacggcggtggaggggatgacctaggcgccaacgacgaactgatttcc
ttcaaagacgagggcgaacaggaggagaagagctccgaaaactcctcggcagagagggat
ttagctgatgtcaaatcgtctctagtcaatgaatcagaaacgaatcaaaacagctcctcc
gattccgaggcggaaagacggcctccgcctcgctccgaaagtttccgagacaaatcccgg
gaaagtttggaagaagcggccaagaggcaagatggagggctctttaaggggccaccgtat
cccggctaccccttcatcatgatccccgacctgacgagcccctacctccccaacggatcg
ctctcgcccaccgcccgaaccggccgcgagcgccctgggcgccgtggcgggctccgctgc
ccggcgcactggctgcgggctctcccgggccgcgcagggcagcagggctga

>gi568815588f:112850757_113265631|GENSCAN_predicted_peptide_3|140_aa
MLERNSFTNRIFCEETFLICFHHYENVATATSDKKTQSKAGCLKHTGGLVCPIIGFIHLV
EVQFTLANITPVQATFSAPVAGARQICHRIITVIQPPPTTTTTTITTTTITTTTTITTTT
TTIIIIIIIIIISVGGRGGE

>gi568815588f:112850757_113265631|GENSCAN_predicted_CDS_3|423_bp
atgctcgagagaaacagcttcacaaatcgtatcttctgtgaggagacatttctcatctgc
tttcaccattatgaaaatgtagcaacagcaacaagtgacaagaaaacacaaagcaaagca
ggctgcctaaaacatactggtggtttggtctgccccataattgggtttatccatcttgtt
gaagtacagtttacacttgctaacatcacgccagttcaagctacattttctgctccagtg
gcaggagcaaggcagatttgtcatcggatcataacagtgattcaacccccccccaccacc
accaccaccaccatcaccaccaccaccatcaccaccaccaccaccatcaccaccaccacc
accaccatcatcatcatcatcatcatcatcattatctcagttgggggaaggggcggagaa
taa

>gi568815588f:112850757_113265631|GENSCAN_predicted_peptide_4|140_aa
MPLNIIPVIQIRKQNFKEEHGQCRRRKSTLVFGLNQRLAMVPKQGAKWLTLVFMPCAEKV
CQPCPEQIKGQIPLAPSICGAESLKGNTGNTGSHLVFYQGCEVSWQLCRHIIIIITIIII
IIIIIIIIIIIICPLSFLLV

>gi568815588f:112850757_113265631|GENSCAN_predicted_CDS_4|423_bp
atgcctttaaacatcatccccgttatacagataagaaaacagaatttcaaagaagaacat
ggccagtgcaggaggaggaaatccacactggtctttggactgaaccagaggctggcgatg
gtcccgaaacagggtgccaagtggctgacccttgtttttatgccttgcgctgaaaaagtt
tgccaaccctgccctgaacaaataaagggacaaattccacttgccccgtccatctgtgga
gcagagtcactgaaaggaaatactggaaatactggaagccacttggtgttttatcaagga
tgtgaggtttcctggcaactttgtcgccatatcatcatcatcatcaccatcatcatcatc
atcatcatcatcatcatcatcatcatcatcatcatctgccctttaagttttctgcttgtt
tag

>gi568815588f:112850757_113265631|GENSCAN_predicted_peptide_5|206_aa
MLPVLGEQHLRVKPFTAASGVFMAMISLSAVSTPRHHGTQNDSDPTRIQGSQWMGPALER
VISLTPTSHVIQWEPLSYAHQSILATSILEYLVLQRNLNQADESALADLNCTKQTREPFS
DCQFPLGTLKPDPRTNTVHRKRTEPSSNNEVVIISQTEINNCMLSLPPIFHDLKNNASSN
TTPEQHRRCPCERNKQLVPSEQEDKE

>gi568815588f:112850757_113265631|GENSCAN_predicted_CDS_5|621_bp
atgcttcctgtccttggagagcaacatctgcgagtaaagccattcacggctgcctcaggc
gtttttatggctatgatatccctatcagcggtcagcacacccagacatcatggcacccaa
aatgacagtgacccaacaagaattcagggatcgcagtggatgggccctgccctagagaga
gtgatctccctgacaccgaccagccatgtgatccagtgggagccgctatcttacgctcac
caaagcattcttgccactagtattcttgaatatctggttttacaaaggaatctcaatcag
gccgatgaatcagctcttgcagatctcaactgtaccaagcagacacgagaacctttctca
gactgtcaatttccactaggcacgttaaagcctgacccgcgcaccaacacagtccaccga
aaacgtacagaaccttcatcaaataatgaagttgtaataatcagtcaaacagaaataaac
aactgtatgctcagcttgccaccaattttccatgatttaaaaaataatgcttctagtaat
acaacacctgagcaacacagacggtgtccttgtgagagaaacaagcagcttgtgccctca
gagcaggaagacaaagagtaa

>gi568815588f:112850757_113265631|GENSCAN_predicted_peptide_6|44_aa
MKLSVRSKAGGSLWLTFHDNMPLEIAVLLINPLDMTDLPQGLAL

>gi568815588f:112850757_113265631|GENSCAN_predicted_CDS_6|135_bp
atgaagctgtctgtgaggagcaaagcaggtggctccctgtggctgacttttcatgacaac
atgccattagaaattgccgtcctgttgatcaatcctctcgacatgacagatttgccgcaa
ggcctggctctttga

>gi568815588f:112850757_113265631|GENSCAN_predicted_peptide_7|598_aa
MDDSEFSNGPAPMTNTILIFINCFDNANFDAVVKGLPKLPAKASELRKSNKVPVVQHPHH
VHPLTPLITYSNEHFTPGNPPPHLPADVDPKTEWTTGCAPVELADVRWHVLAESAHVCLV
KLLAPATHAVPIQQESHGLRTLQIYPRITHYRLAPQGQPVYPITTGGFRHPYPTALTVNA
SMSRFPPHMVPPHHTLHTTGIPHPAIVTPTVKQESSQSDVGSLHSSKHQDSKKEEEKKKP
HIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQ
LHMQLYPGWSARDNYMGSQTACNAIIPLLSESSSCRPPFPFMDQMLWVRFDNGHRYMRNE
SFPSPPANPFSAPKKRVSLQLGYNARAFGLKRGWRLDKYRGFVWMEMAVWSLPPAFSFQG
KKKKRKRDKQPGETNDLSAPKKCRARFGLDQQNNWCGPCRRKKKCVRYIQGEGSCLSPPS
SDGSLLDSPPPSPNLLGSPPRDAKSQTEQTQPLSLSLKPDPLAHLSMMPPPPALLLAEAT
HKASALCPNGALDLPPAALQPAAPSSSIAQPSTSSLHSHSSLAGTQPQPLSLVTKSLE

>gi568815588f:112850757_113265631|GENSCAN_predicted_CDS_7|1797_bp
atggatgactcggagttcagcaacgggccggctccaatgacaaatacaatattaatattc
attaactgctttgacaatgctaattttgatgcagtagtaaagggccttccaaagttaccg
gccaaagcatcagagctgcgcaagtctaacaaagtgccagtggtgcagcaccctcaccat
gtccaccccctcacgcctcttatcacgtacagcaatgaacacttcacgccgggaaaccca
cctccacacttaccagccgacgtagaccccaaaacagagtggactacaggatgtgctcct
gtggaactggcagatgtgcggtggcacgtacttgcagaatccgctcatgtgtgccttgtg
aagctcttagcccctgcgacgcacgcggtgcccattcagcaggaatcccacggcctccgc
accctccagatatatccccgtattacccactatcgcctggcaccgcaaggtcaaccagtg
tacccaatcacgacaggaggattcagacacccctaccccacagctctgaccgtcaatgct
tccatgtccaggttccctccccatatggtcccaccacatcatacgctacacacgacgggc
attccgcatccggccatagtcacaccaacagtcaaacaggaatcgtcccagagtgatgtc
ggctcactccatagttcaaagcatcaggactccaaaaaggaagaagaaaagaagaagccc
cacataaagaaacctcttaatgcattcatgttgtatatgaaggaaatgagagcaaaggtc
gtagctgagtgcacgttgaaagaaagcgcggccatcaaccagatccttgggcggaggtgg
catgcactgtccagagaagagcaagcgaaatactacgagctggcccggaaggagcgacag
cttcatatgcaactgtaccccggctggtccgcgcgggataactatatgggctctcagact
gcttgcaacgccatcatcccactcctctctgaatcttcctcgtgccgtcccccattccct
tttatggatcaaatgctgtgggtcaggtttgacaatggacataggtacatgagaaatgag
agcttcccttcaccacccgccaatcccttctctgctcccaagaagcgtgtgtccctccag
ctggggtacaatgcaagggcatttggcttgaagcggggttggaggttggacaaataccgg
gggtttgtgtggatggagatggcagtatggtcacttcctcctgccttctccttccaggga
aagaagaagaagaggaaaagggacaagcagccgggagagaccaatgacctgagcgctcct
aagaaatgccgagcgcgctttggccttgatcaacagaataactggtgcggcccttgcagg
agaaaaaaaaagtgcgttcgctacatacaaggtgaaggcagctgcctcagcccaccctct
tcagatggaagcttactagattcgcctcccccctccccgaacctgctaggctcccctccc
cgagacgccaagtcacagactgagcagacccagcctctgtcgctgtccctgaagcccgac
cccctggcccacctgtccatgatgcctccgccacccgccctcctgctcgctgaggccacc
cacaaggcctccgccctctgtcccaacggggccctggacctgcccccagccgctttgcag
cctgccgccccctcctcatcaattgcacagccgtcgacttcttccttacattcccacagc
tccctggccgggacccagccccagccgctgtcgctcgtcaccaagtctttagaatag

>gi568815588f:112850757_113265631|GENSCAN_predicted_peptide_8|73_aa
MDVHNYQGPIFGGSCWQPPEPAQCGLPDSEFERVIERQIKAALVAAFPDRADPHARCLYN
EDKILAGLKRTFQ

>gi568815588f:112850757_113265631|GENSCAN_predicted_CDS_8|222_bp
atggacgtccataattaccagggccccatatttgggggttcctgttggcagccccctgag
cctgctcaatgtgggctccctgacagcgagtttgaaagggttatagagaggcagataaag
gccgcgcttgttgcagccttccctgacagggccgacccccacgccaggtgcctttacaac
gaggataagatccttgctggcctaaagagaacattccagtag

>gi568815588f:112850757_113265631|GENSCAN_predicted_peptide_9|110_aa
MAALIYGCLIEAVFLKNNLAECNITLFNRCAEQRYRLPWRPSGLSLNYREIWTHQDVEND
SGLSTRAVILAGHAEGLSSKWNVPETGKGKALELLCRVSTGSHKPKSWGQ

>gi568815588f:112850757_113265631|GENSCAN_predicted_CDS_9|333_bp
atggctgctctcatttatggctgtttaattgaggcagtctttctgaagaacaatttagca
gaatgtaacataactctttttaaccgctgtgctgaacaacgataccggttgccctggaga
ccatctggtctgagcctcaattaccgagagatctggactcaccaggatgtagaaaacgac
tcaggactgtcaacaagggcagtcatcctggcgggacatgcagaggggctgtcctctaaa
tggaacgttccagagactggcaaagggaaggctctagagctcctctgcagagtctccacg
ggctcccacaagcccaagagttgggggcagtag

>gi568815588f:112850757_113265631|GENSCAN_predicted_peptide_10|147_aa
XAVKRPFVSRDYGKFLPSSLLGDLPLLIGSVFDCQQMEDSFWLVLSPGRRGAEYHGQVHS
EAENNAQQLDLLLDLAAGIAFLIPAQKDDLGAAGSSPGMSPQPPPKSRLPGRRALSHGHH
YHKAQEEYCQANINVHLRPKISPVSLW

>gi568815588f:112850757_113265631|GENSCAN_predicted_CDS_10|444_bp
ngtgcagtcaaaaggccctttgtctccagagattatgggaaattccttccttcctccctg
cttggggacctgccgctcttaataggttcagtatttgattgtcaacagatggaagattca
ttctggctggtcctttctcctggaagaagaggggctgagtaccatgggcaggtccactcg
gaagcagagaacaatgcccagcaacttgacctcctcctagacctggcagcagggatagct
ttcctgattcctgcccagaaggatgacctgggggcagcaggatctagccccggaatgtcc
ccacagcctcctcccaagtccagacttccaggcagaagagccttatcccatggccaccac
taccacaaggcccaggaggagtactgccaggctaacatcaatgttcacttaaggcccaag
atctctccagtcagcttgtggtga