Result of FASTA (ccds) for pF1KE1031
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1031, 1393 aa
  1>>>pF1KE1031 1393 - 1393 aa - 1393 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5473+/-0.000831; mu= 18.8379+/- 0.050
 mean_var=115.3950+/-22.559, 0's: 0 Z-trim(111.0): 16  B-trim: 0 in 0/52
 Lambda= 0.119394
 statistics sampled from 11999 (12005) to 11999 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.369), width:  16
 Scan time:  5.190

The best scores are:                                      opt bits E(32554)
CCDS10079.1 RPAP1 gene_id:26015|Hs108|chr15        (1393) 9276 1609.5       0


>>CCDS10079.1 RPAP1 gene_id:26015|Hs108|chr15             (1393 aa)
 initn: 9276 init1: 9276 opt: 9276  Z-score: 8631.2  bits: 1609.5 E(32554):    0
Smith-Waterman score: 9276; 99.9% identity (99.9% similar) in 1393 aa overlap (1-1393:1-1393)

               10        20        30        40        50        60
pF1KE1 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDANSDRPPLQDHRDVVMLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDANSDRPPLQDHRDVVMLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRHDQHITAVLTKIIERDTSSVAVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRHDQHITAVLTKIIERDTSSVAVN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 EEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 SEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 AQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 STFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRKSPEEESRPPPDLARHDVIKGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 STFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKRKSPEEESRPPPDLARHDVIKGLL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 ATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLESATGVLECPRLIETIVREFLPT
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS10 ATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLESATRVLECPRLIETIVREFLPT
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE1 SWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRIIAEAPQEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRIIAEAPQEL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE1 ALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVLMRALQVVPRELSTHPPQPLSMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVLMRALQVVPRELSTHPPQPLSMQ
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE1 RIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLK
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE1 LLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPEDWLQDMERLSEELLLPLLSQPT
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
CCDS10 LLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPEDWLQDMQRLSEELLLPLLSQPT
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE1 LGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSL
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KE1 LNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALA
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KE1 LAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRLEFLPERTSGGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRLEFLPERTSGGP
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KE1 EAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGE
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KE1 LQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPSGLSPTDTMGTAMRVLQWVLVLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPSGLSPTDTMGTAMRVLQWVLVLE
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KE1 SWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCR
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KE1 LPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALS
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KE1 LPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQD
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KE1 PQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYLQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYLQR
             1330      1340      1350      1360      1370      1380

             1390   
pF1KE1 LTSTVLQNGVSET
       :::::::::::::
CCDS10 LTSTVLQNGVSET
             1390   




1393 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:31:10 2016 done: Sat Nov  5 07:31:10 2016
 Total Scan time:  5.190 Total Display time:  0.090

Function used was FASTA [36.3.4 Apr, 2011]
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