Result of FASTA (ccds) for pF1KB3487
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3487, 664 aa
  1>>>pF1KB3487 664 - 664 aa - 664 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9244+/-0.000937; mu= 15.7298+/- 0.056
 mean_var=67.7163+/-13.658, 0's: 0 Z-trim(104.6): 28  B-trim: 4 in 1/49
 Lambda= 0.155857
 statistics sampled from 7971 (7979) to 7971 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.245), width:  16
 Scan time:  3.660

The best scores are:                                      opt bits E(32554)
CCDS3853.1 SDHA gene_id:6389|Hs108|chr5            ( 664) 4485 1017.9       0
CCDS82985.1 SDHA gene_id:6389|Hs108|chr5           ( 583) 3501 796.6       0
CCDS77992.1 SDHA gene_id:6389|Hs108|chr5           ( 616) 3474 790.6       0


>>CCDS3853.1 SDHA gene_id:6389|Hs108|chr5                 (664 aa)
 initn: 4485 init1: 4485 opt: 4485  Z-score: 5445.3  bits: 1017.9 E(32554):    0
Smith-Waterman score: 4485; 99.8% identity (100.0% similar) in 664 aa overlap (1-664:1-664)

               10        20        30        40        50        60
pF1KB3 MSGVRGLSRLLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MSGVRGLSRLLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 DGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 DGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 KDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 KDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 VLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCRPGDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 VLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCRPGDK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 VPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQEGCGKIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 VPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQEGCGKIS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 KLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 KLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 IDEYDYSKPIQGQQKKPFEEHWRKHTLSFVDVGTGKVTLEYRPVIDKTLNEADCATVPPA
       ::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS38 IDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVGTGKVTLEYRPVIDKTLNEADCATVPPA
              610       620       630       640       650       660

           
pF1KB3 IRSY
       ::::
CCDS38 IRSY
           

>>CCDS82985.1 SDHA gene_id:6389|Hs108|chr5                (583 aa)
 initn: 3501 init1: 3501 opt: 3501  Z-score: 4250.5  bits: 796.6 E(32554):    0
Smith-Waterman score: 3777; 87.7% identity (87.8% similar) in 664 aa overlap (1-664:1-583)

               10        20        30        40        50        60
pF1KB3 MSGVRGLSRLLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MSGVRGLSRLLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 DGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 KDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 VLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCRPGDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCRPGDK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 VPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQEGCGKIS
       :::::::::::::::::::::::::::::::::::::                       
CCDS82 VPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQK-----------------------
              490       500       510                              

              550       560       570       580       590       600
pF1KB3 KLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVR
                                                                 ::
CCDS82 ----------------------------------------------------------VR
                                                                   

              610       620       630       640       650       660
pF1KB3 IDEYDYSKPIQGQQKKPFEEHWRKHTLSFVDVGTGKVTLEYRPVIDKTLNEADCATVPPA
       ::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS82 IDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVGTGKVTLEYRPVIDKTLNEADCATVPPA
     520       530       540       550       560       570         

           
pF1KB3 IRSY
       ::::
CCDS82 IRSY
     580   

>>CCDS77992.1 SDHA gene_id:6389|Hs108|chr5                (616 aa)
 initn: 3474 init1: 3474 opt: 3474  Z-score: 4217.3  bits: 790.6 E(32554):    0
Smith-Waterman score: 4034; 92.6% identity (92.8% similar) in 664 aa overlap (1-664:1-616)

               10        20        30        40        50        60
pF1KB3 MSGVRGLSRLLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MSGVRGLSRLLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR
       ::::::::::::::::::::::::::::::::::::::::::::                
CCDS77 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQ----------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KB3 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF
                                       ::::::::::::::::::::::::::::
CCDS77 --------------------------------LENYGMPFSRTEDGKIYQRAFGGQSLKF
                                          110       120       130  

              190       200       210       220       230       240
pF1KB3 GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE
            140       150       160       170       180       190  

              250       260       270       280       290       300
pF1KB3 DGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGI
            200       210       220       230       240       250  

              310       320       330       340       350       360
pF1KB3 YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE
            260       270       280       290       300       310  

              370       380       390       400       410       420
pF1KB3 KDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ
            320       330       340       350       360       370  

              430       440       450       460       470       480
pF1KB3 VLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCRPGDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCRPGDK
            380       390       400       410       420       430  

              490       500       510       520       530       540
pF1KB3 VPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQEGCGKIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQEGCGKIS
            440       450       460       470       480       490  

              550       560       570       580       590       600
pF1KB3 KLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVR
            500       510       520       530       540       550  

              610       620       630       640       650       660
pF1KB3 IDEYDYSKPIQGQQKKPFEEHWRKHTLSFVDVGTGKVTLEYRPVIDKTLNEADCATVPPA
       ::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS77 IDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVGTGKVTLEYRPVIDKTLNEADCATVPPA
            560       570       580       590       600       610  

           
pF1KB3 IRSY
       ::::
CCDS77 IRSY
           




664 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:06:54 2016 done: Sat Nov  5 07:06:55 2016
 Total Scan time:  3.660 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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