Result of FASTA (ccds) for pF1KA1849
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1849, 1073 aa
  1>>>pF1KA1849 1073 - 1073 aa - 1073 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.2373+/-0.00104; mu= 0.4986+/- 0.062
 mean_var=315.1989+/-64.803, 0's: 0 Z-trim(114.0): 50  B-trim: 128 in 1/51
 Lambda= 0.072241
 statistics sampled from 14548 (14589) to 14548 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.448), width:  16
 Scan time:  4.600

The best scores are:                                      opt bits E(32554)
CCDS43544.1 RADIL gene_id:55698|Hs108|chr7         (1075) 7115 756.2 8.8e-218
CCDS12731.1 RASIP1 gene_id:54922|Hs108|chr19       ( 963) 1266 146.5 2.6e-34


>>CCDS43544.1 RADIL gene_id:55698|Hs108|chr7              (1075 aa)
 initn: 7126 init1: 5430 opt: 7115  Z-score: 4023.3  bits: 756.2 E(32554): 8.8e-218
Smith-Waterman score: 7115; 98.3% identity (98.7% similar) in 1075 aa overlap (1-1073:1-1075)

               10        20        30        40        50        60
pF1KA1 MFYGTHFIMSPPTKSKLKRQSQLLSSMLSRTLSYKYRDLDSTFSSLGASDDPAELSTQLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MFYGTHFIMSPPTKSKLKRQSQLLSSMLSRTLSYKYRDLDSTFSSLGASDDPAELSTQLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 APGVLKVFGDSVCTGTHYKSVLATGTSSARELVKEALERYALDPRQAGQYVLCDVVGQAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 APGVLKVFGDSVCTGTHYKSVLATGTSSARELVKEALERYALDPRQAGQYVLCDVVGQAG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 DAGQRWQARCFRVFGDSEKPLLIQELWKPREGLSRRFELRKRSDVEELAAKEVDTITAGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DAGQRWQARCFRVFGDSEKPLLIQELWKPREGLSRRFELRKRSDVEELAAKEVDTITAGI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 NAQARRLQRSRAKGTPTPALGDARSSPPPRLRRTVSETSLSPVNALPAAAQGPEEPGPNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS43 NAQARRLQRSRAKGTPTPALGDARSSPPPRLRRTVSETSLSPVNALPAAAQGPEEPGPDA
              190       200       210       220       230       240

              250       260        270        280       290        
pF1KA1 MRYSLYQSPHLLLLQGYSQQHPG-VCAQPGPAHG-GPADPSSKPSISLSAPDILPLHCTI
       ::::::::::::::::::::: . : .     :  :   :::::::::::::::::::::
CCDS43 MRYSLYQSPHLLLLQGYSQQHDSLVYVLNRDRHTVGQRTPSSKPSISLSAPDILPLHCTI
              250       260       270       280       290       300

      300       310       320       330       340       350        
pF1KA1 RRQPLPDSGQAAGRLVLEPIPGAHISVNFSEVGHRTVVLHHGDLLSLGLYYLLLFKDPAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RRQPLPDSGQAAGRLVLEPIPGAHISVNFSEVGHRTVVLHHGDLLSLGLYYLLLFKDPAQ
              310       320       330       340       350       360

      360       370       380       390       400       410        
pF1KA1 AQPLPARALARLRAVPQSCRLCGAALGARGAASPTQAALPRRQQLLLEFEPDLEDTLLQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
CCDS43 AQPLPARALARLRAVPQSCRLCGAALGARGAASPTQAALPRRQQLLLEFEPHLEDTLLQR
              370       380       390       400       410       420

      420       430       440       450       460       470        
pF1KA1 IMTLIEPGGDDHKLTPAFLLCLCIQHSATHFQPGTFGQLLLKIARLIRETVWEKTKELAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IMTLIEPGGDDHKLTPAFLLCLCIQHSATHFQPGTFGQLLLKIARLIRETVWEKTKELAE
              430       440       450       460       470       480

      480       490       500       510       520       530        
pF1KA1 KQAQLQEPISLASCAMADLVPDLQPILFWMSNSIELLYFIQQKCPLYMQSMEEQLDITGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KQAQLQEPISLASCAMADLVPDLQPILFWMSNSIELLYFIQQKCPLYMQSMEEQLDITGS
              490       500       510       520       530       540

      540       550       560       570       580       590        
pF1KA1 KESLFSCTLTASEEAMAVLEEVVLYAFQQCVYYVSKSLYICLPALLECPPFQTERRESWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KESLFSCTLTASEEAMAVLEEVVLYAFQQCVYYVSKSLYICLPALLECPPFQTERRESWS
              550       560       570       580       590       600

      600       610       620       630       640       650        
pF1KA1 SAPELPEELRRVVSVYQAALDLLRQLQVHPEVASQMLAYLFFFSGTLLLNQLLDRGPSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SAPELPEELRRVVSVYQAALDLLRQLQVHPEVASQMLAYLFFFSGTLLLNQLLDRGPSLS
              610       620       630       640       650       660

      660       670       680       690       700       710        
pF1KA1 CFHWPRGVQACARLQQLLEWMRSAGFGAAGEHFFQKLSCTLNLLATPRAQLIQMSWTALR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CFHWPRGVQACARLQQLLEWMRSAGFGAAGEHFFQKLSCTLNLLATPRAQLIQMSWTALR
              670       680       690       700       710       720

      720       730       740       750       760       770        
pF1KA1 AAFPALSPAQLHRLLTHYQLASAMGPMSTWEPGAQDSPEAFRSEDVLESYENPPPIVLPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AAFPALSPAQLHRLLTHYQLASAMGPMSTWEPGAQDSPEAFRSEDVLESYENPPPIVLPS
              730       740       750       760       770       780

      780       790       800       810       820       830        
pF1KA1 DGFQVDLEANCLDDSIYQHLLYVRHFLWGLRSRASPGSPGRPGSGASQPVCPEGMHHVVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DGFQVDLEANCLDDSIYQHLLYVRHFLWGLRSRASPGSPGRPGSGASQPVCPEGMHHVVL
              790       800       810       820       830       840

      840       850       860       870       880       890        
pF1KA1 DGHLEAPSCPLAPRDPGPAAREVAPERTLPLRGAPWAQAPPGRQPGRGGSQAGPPHTDSS
       :::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS43 DGHLEAPSCPLAPRDPGPAAREVAPERTLPLRGAPWAQAPPGRQPSRGGSQAGPPHTDSS
              850       860       870       880       890       900

      900       910       920       930       940       950        
pF1KA1 CLLTPPSTPLGPEPGDPDWPESGGPCGKALPERQRNGLSGLRGAAPEGDSAALAEESPPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CLLTPPSTPLGPEPGDPDWPESGGPCGKALPERQRNGLSGLRGAAPEGDSAALAEESPPA
              910       920       930       940       950       960

      960       970       980       990      1000      1010        
pF1KA1 PSSRSSSTEDFCYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PSSRSSSTEDFCYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRL
              970       980       990      1000      1010      1020

     1020      1030      1040      1050      1060      1070   
pF1KA1 SLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHFRTPPL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHFRTPPL
             1030      1040      1050      1060      1070     

>>CCDS12731.1 RASIP1 gene_id:54922|Hs108|chr19            (963 aa)
 initn: 1497 init1: 493 opt: 1266  Z-score: 729.4  bits: 146.5 E(32554): 2.6e-34
Smith-Waterman score: 1651; 37.1% identity (63.3% similar) in 856 aa overlap (47-827:130-963)

         20        30        40        50        60        70      
pF1KA1 LKRQSQLLSSMLSRTLSYKYRDLDSTFSSLGASDDPAELSTQLSAPGVLKVFGDSVCTGT
                                     :.. .:   .   . :::::.:: .. .:.
CCDS12 TTGSSGAGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRATAPPGVLKIFGAGLASGA
     100       110       120       130       140       150         

         80        90       100                110       120       
pF1KA1 HYKSVLATGTSSARELVKEALERYALDPRQAG---------QYVLCDVVGQAGDAG---Q
       .:::::::. :.::::: ::::::.:    .:          ..:::..:. . ::    
CCDS12 NYKSVLATARSTARELVAEALERYGLAGSPGGGPGESSCVDAFALCDALGRPAAAGVGSG
     160       170       180       190       200       210         

          130       140       150       160       170        180   
pF1KA1 RWQARCFRVFGDSEKPLLIQELWKPREGLSRRFELRKRSDVEELAAKEVDTI-TAGINAQ
       .:.:. .::.::::.:::.::::. : : .:::::: : ....:  .   .  . : .: 
CCDS12 EWRAEHLRVLGDSERPLLVQELWRARPGWARRFELRGREEARRLEQEAFGAADSEGTGAP
     220       230       240       250       260       270         

           190               200          210            220       
pF1KA1 ARRLQRSRAKG--------TPTPALGD---ARSSPPPR-----LRRTVSETSLS------
       . : :..:...        .: :. :.   : :.   :     :::.::: ::.      
CCDS12 SWRPQKNRSRAASGGAALASPGPGTGSGAPAGSGGKERSENLSLRRSVSELSLQGRRRRQ
     280       290       300       310       320       330         

                   230           240           250                 
pF1KA1 ------PVNALPAAAQ---GPEEPGP-NAMRYSLYQSP----HLLLLQGYS---------
              ..  :.::.   :  .::  . .   : :.:    ..::::::.         
CCDS12 QERRQQALSMAPGAADAQIGTADPGDFDQLTQCLIQAPSNRPYFLLLQGYQDAQDFVVYV
     340       350       360       370       380       390         

         260       270       280       290       300       310     
pF1KA1 ---QQHPGVCAQPGPAHGGPADPSSKPSISLSAPDILPLHCTIRRQPLPDSGQAAGRLVL
          .::  : .. : . :  ..:.   .  :.:::::: :::.:  :   .       ..
CCDS12 MTREQH--VFGRGGNSSGRGGSPAPYVDTFLNAPDILPRHCTVRAGPEHPA-------MV
     400         410       420       430       440              450

         320       330       340       350       360          370  
pF1KA1 EPIPGAHISVNFSEVGHRTVVLHHGDLLSLGLYYLLLFKDPAQAQPLPARAL---ARLRA
       .:  :: .. : . .  : . :: ::::.:: ..:...:::  .   :::     ::  :
CCDS12 RPSRGAPVTHN-GCLLLREAELHPGDLLGLGEHFLFMYKDPRTGGSGPARPPWLPARPGA
              460        470       480       490       500         

                  380       390       400       410       420      
pF1KA1 VPQ------SCRLCGAALGARGAASPTQAALPRRQQLLLEFEPDLEDTLLQRIMTLIEPG
       .:       :::::: .:  :: :    : :  :. .: .:.:  :..:: .:.     :
CCDS12 TPPGPGWAFSCRLCGRGLQERGEA--LAAYLDGREPVL-RFRPREEEALLGEIVRAAAAG
     510       520       530         540        550       560      

         430       440       450       460       470       480     
pF1KA1 -GDDHKLTPAFLLCLCIQHSATHFQPGTFGQLLLKIARLIRETVWEKTKELAEKQAQLQ-
        ::   : :: :: ::.:::: ... : . .:: ..::::.:.:::: ::....: . . 
CCDS12 SGDLPPLGPATLLALCVQHSARELELGHLPRLLGRLARLIKEAVWEKIKEIGDRQPENHP
        570       580       590       600       610       620      

          490       500       510       520       530       540    
pF1KA1 EPISLASCAMADLVPDLQPILFWMSNSIELLYFIQQKCPLYMQSMEEQLDITGSKESLFS
       : .  .  .   .  .:.:...::.:. ::: :.:.:    .  ::.. :   ...  . 
CCDS12 EGVPEVPLTPEAVSVELRPLMLWMANTTELLSFVQEK----VLEMEKEAD---QEDPQLC
        630       640       650       660           670            

          550       560       570       580       590       600    
pF1KA1 CTLTASEEAMAVLEEVVLYAFQQCVYYVSKSLYICLPALLECPPFQTERRESWSSAPEL-
         :   .::::.:.::.. .::: :::..:.::  :::::.  :: :   :  . . :: 
CCDS12 NDLELCDEAMALLDEVIMCTFQQSVYYLTKTLYSTLPALLDSNPF-TAGAELPGPGAELG
     680       690       700       710       720        730        

             610       620       630       640       650       660 
pF1KA1 --PEELRRVVSVYQAALDLLRQLQVHPEVASQMLAYLFFFSGTLLLNQLLDRGPSLSCFH
         :  :: ...:.::::.:  : ..::...:: ..::::::.. :::.:..:: .   ..
CCDS12 AMPPGLRPTLGVFQAALELTSQCELHPDLVSQTFGYLFFFSNASLLNSLMERGQGRPFYQ
      740       750       760       770       780       790        

             670       680       690       700       710       720 
pF1KA1 WPRGVQACARLQQLLEWMRSAGFGAAGEHFFQKLSCTLNLLATPRAQLIQMSWTALRAAF
       : :.::  . :. .:.:...::.:  . .::.::: ..::: .::..:.. ::..::.  
CCDS12 WSRAVQIRTNLDLVLDWLQGAGLGDIATEFFRKLSMAVNLLCVPRTSLLKASWSSLRTDH
      800       810       820       830       840       850        

             730       740       750       760       770       780 
pF1KA1 PALSPAQLHRLLTHYQLASAMGPMSTWEPGAQDSPEAFRSEDVLESYENPPPIVLPSDGF
       :.:.:::::.::.::::. . :: ..:.:   .  ::  . :..::. . ::..::  . 
CCDS12 PTLTPAQLHHLLSHYQLGPGRGPPAAWDPPPAER-EAVDTGDIFESFSSHPPLILPLGSS
      860       870       880       890        900       910       

             790       800       810       820       830       840 
pF1KA1 QVDLEANCLDDSIYQHLLYVRHFLWGLRSRASPGSPGRPGSGASQPVCPEGMHHVVLDGH
       .. : .   ::.....:  .:..:: :...  :..  .    :..:              
CCDS12 RLRLTGPVTDDALHRELRRLRRLLWDLEQQELPANYRHGPPVATSP              
       920       930       940       950       960                 

             850       860       870       880       890       900 
pF1KA1 LEAPSCPLAPRDPGPAAREVAPERTLPLRGAPWAQAPPGRQPGRGGSQAGPPHTDSSCLL




1073 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:56:01 2016 done: Sat Nov  5 06:56:02 2016
 Total Scan time:  4.600 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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