GENSCAN 1.0	Date run:  5-Nov-116	Time: 06:46:49

Sequence gi568815597f:112973407_113224098 : 250692 bp : 43.18% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  25652  25703   52  1  1   70   92    49 0.026   4.91
 1.02 Intr +  40744  40795   52  2  1   49  116    35 0.004   0.37
 1.03 Intr +  67240  67471  232  1  1    2   81   245 0.010  12.98
 1.04 Term +  83765  83872  108  1  0  116   38    43 0.251   0.61
 1.05 PlyA +  84138  84143    6                               1.05

 2.00 Prom +  92033  92072   40                              -5.36
 2.01 Init + 100001 100239  239  1  2   95   76   177 0.269  12.80
 2.02 Intr + 117912 117977   66  0  0  104   84    26 0.764   1.82
 2.03 Intr + 119800 119874   75  1  0  108   87    43 0.944   4.83
 2.04 Intr + 122468 122611  144  2  0   89   93   106 0.999  10.60
 2.05 Intr + 122816 122959  144  2  0   97   87    64 0.952   6.60
 2.06 Intr + 127014 127082   69  0  0  112   93    -5 0.531   0.70
 2.07 Intr + 133772 133835   64  2  1   50   85    77 0.569   2.32
 2.08 Intr + 136856 137156  301  1  1   30   91   155 0.262   6.31
 2.09 Intr + 139073 139354  282  0  0   63   84   204 0.955  14.89
 2.10 Intr + 141180 141470  291  1  0   65  111   170 0.397  14.11
 2.11 Intr + 145827 146117  291  1  0   70   79   195 0.967  13.91
 2.12 Term + 153455 153543   89  0  2   74   44    58 0.117  -2.18
 2.13 PlyA + 154652 154657    6                               1.05

 3.00 Prom + 166231 166270   40                              -4.16
 3.01 Sngl + 195797 195997  201  1  0   52   42   225 0.673   9.48
 3.02 PlyA + 196016 196021    6                               1.05

 4.00 Prom + 205513 205552   40                              -4.76
 4.01 Init + 225504 225797  294  2  0   66  -19   724 0.894  56.69
 4.02 Term + 228792 228878   87  2  0  113   48    73 0.858   3.46
 4.03 PlyA + 229274 229279    6                               1.05

 5.05 PlyA - 230164 230159    6                               1.05
 5.04 Term - 236862 236773   90  0  0  109   43    56 0.916   0.92
 5.03 Intr - 237234 236907  328  2  1   95  115    86 0.972   7.70
 5.02 Intr - 239839 239779   61  2  1   58  115    43 0.072   1.79
 5.01 Intr - 250391 250291  101  1  2   97   40    70 0.432   2.85

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 117715 117728   14  0  2   82  109    12 0.887   2.50
S.002 Term + 215213 215275   63  1  0  107   54    81 0.887   4.49
S.003 Init - 239813 239779   35  2  2   84  115    30 0.821   4.66


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:112973407_113224098|GENSCAN_predicted_peptide_1|147_aa
MCTDSPGAGTTRASAELYHIGKRMNIQKLMFNSGRIVNSMEDNPDRNIMTVWKHYTIEDI
IIVTEKAMKAIKPKTINSCWRKLCPDVVHDLSGYMTEAIKEIMKEIVDVPKKFITSCLSS
RFPVAGQLELLQEDKQEGCSCQCRLPC

>gi568815597f:112973407_113224098|GENSCAN_predicted_CDS_1|444_bp
atgtgcaccgactcccctggagctggcaccaccagggcgtctgcagagctatatcacatt
gggaaacgcatgaacatccaaaagttaatgtttaactctggaaggattgtcaacagtatg
gaagataaccctgataggaacatcatgacagtctggaagcattacaccattgaagacatc
atcattgttacagaaaaagctatgaaagccatcaagcccaaaacaataaattcctgctgg
agaaaactgtgtccagatgttgtgcatgacttatcaggatatatgacagaagcaatcaag
gaaatcatgaaagagattgtggatgtcccaaaaaagttcattaccagctgcttaagcagc
aggttcccagtggctggtcagctggaactgcttcaggaggacaaacaggaaggatgcagc
tgccagtgcagattaccctgttag

>gi568815597f:112973407_113224098|GENSCAN_predicted_peptide_2|684_aa
MAPAPLGVPEEQLLGCRSRVLSRLLFIAQTALLLLPAAGAGLCPAPCSCRIPLLDCSRRK
LPAPSWRALSGLLPPDTAILDFSHNRLSNWNISLESQTLQEVKMNYNELTEIPYFGEPTS
NITLLSLELEHNNLTRVNKGWLYGLRMLQQLYVSQNAIERISPDAWEFCQRLSELDLSYN
QLTRLDESAFVGLSLLERLNLGDNRVTHIADGVFRFLSNLQTLDLNNNAIMSIQENAFSQ
THLKELTSTFSNEDITITTPKEINIDKIRTHPETIIALRGMNVTLTCTAVSSSDSPMSTV
WRKDSEILYDVDTENFVRYWQQAGEALEYTSILHLFNVNFTDEGKYQCIVTNHFGSNYSQ
KAKLTVNEMPSFLKTPMDLTIRTGAMARLECAAEGHPAPQISWQKDGGTDFPAARERRMH
VMPEDDVFFIANVKIEDMGIYSCMAQNTAGGLSANASLTVLANQLLIIVDAGLEDAGKYT
CIMSNTLGTERGHIYLNVISSPNCDSSQSSIGHEDDGWTTVGIVIIVVVCCVVGTSLIWV
IVIYHMRRKNEDYSITNTGGTGTRVICSDCYDNANIYSRTREYCPYTYIAEEDVLDQTLS
SLMVQMPKETYLVHPPQDTTALESLIPSANREPSAFPTNHERISEKKLPSTQMSGGYLQV
ESFWNHLSIRLLHWATSIFFIVRI

>gi568815597f:112973407_113224098|GENSCAN_predicted_CDS_2|2055_bp
atggcgccggcgcccctaggcgtcccggaggagcagttgctggggtgtcgatctagagtg
ctttctcggttactcttcattgcccagaccgctctcctcctgttgcccgccgccggagca
ggtctctgccccgcgccctgctcctgccgcattcctctcctggactgcagtcgcaggaaa
ttgcccgcaccgagctggagggcgctgtcgggcttgctgccccccgacaccgctatcctg
gatttcagtcataatcggttgtctaactggaacatcagcttggaatcacaaacattacag
gaagtgaaaatgaattacaatgaactaacagaaatcccgtattttggagaacctacatct
aatattactctactttcattagaactggaacacaacaaccttacacgagtaaacaagggg
tggttgtatggcttgcgaatgttacagcagctctatgtgagccagaatgctattgaaaga
atcagccctgatgcatgggagttctgccaaagactatccgaacttgatttgtcctataac
cagctgacccgcctggatgaatctgcctttgtgggtctgagcttattggagagattgaat
ttaggagacaacagagtcactcatattgctgatggtgtatttagatttctttccaatctt
cagacattagatttgaacaataatgctataatgtctatccaagaaaatgctttttctcag
actcatttaaaagaactaacaagtacattttctaacgaagacatcaccattaccacaccc
aaagaaattaacatcgataagataaggacacatcctgaaaccataattgctctaagaggc
atgaatgtgactctgacgtgcactgcagtgagcagcagtgattcacccatgtccactgtg
tggcgcaaagacagtgaaatcctgtatgacgtggatactgagaattttgttcgttattgg
cagcaagctggagaagctctggaatatactagtatcttacatcttttcaatgtgaatttc
acagatgaaggaaaatatcagtgtattgttactaatcactttggttctaattattctcag
aaagccaaactgactgtaaatgagatgccatcttttctgaaaacgccaatggatctgact
attcgcactggtgccatggccagattagaatgtgctgcagagggacaccctgcacctcag
atttcctggcagaaagatggtggtactgactttcctgcggctcgagaaagacgcatgcac
gtcatgcccgaggatgacgtcttctttattgccaatgtgaaaatagaagatatgggaatc
tatagctgcatggcacaaaatacagcaggaggtctctcagcaaatgcttccctaacagtg
ttagccaatcagcttctcatcattgtagatgccgggctagaagatgctgggaaatatacc
tgcattatgtctaacacccttgggacagaacgtggccacatttacctaaatgtcatttca
tcccccaattgtgactcttcccagagtagcattgggcatgaagatgatggctggaccaca
gttggcattgtcatcattgttgtggtctgctgtgttgttggcacttctttgatctgggtc
attgttatttaccacatgagaaggaaaaatgaagactatagtatcacaaacacaggtggc
actggtacccgggtgatttgctcagattgttatgacaatgccaacatctactccaggacc
cgagaatactgtccatacacctatattgctgaggaggacgttcttgatcagacactgtcc
agcctcatggtccaaatgcctaaagagacatatttagtacatcctccccaggatactact
gccctagagagcctgataccgtcagccaacagagagccatctgcctttcccaccaaccat
gagaggataagtgagaagaaacttccctccacacagatgagcggtggttatttgcaagta
gaaagcttctggaaccatttgtccatccgacttctgcactgggccacatccatcttcttc
attgtcagaatctga

>gi568815597f:112973407_113224098|GENSCAN_predicted_peptide_3|66_aa
MGDIKDGIMPSHFSRGSKSVARQVLQALEGLKMVEKGQDGGHKLIPQGQRDVDRITGEVA
ADNKKH

>gi568815597f:112973407_113224098|GENSCAN_predicted_CDS_3|201_bp
atgggggacatcaaagatggcatcatgcccagccacttcagtcgaggctccaagagtgtg
gcccgccaggttctccaagccctggaggggctgaaaatggtggaaaagggccaagatggg
ggccacaaactaatacctcagggacagagagatgtggacagaatcaccggagaggtggca
gctgacaacaagaagcattag

>gi568815597f:112973407_113224098|GENSCAN_predicted_peptide_4|126_aa
MSYEQLIQLYSAHQWCRLNWGLRRKQHSLLKRLRKAKTAVPPMEKPEVVKTHLRDMIIVP
EMVGSMVGVYNGKTFNQVEVKPEMISHYLGEFSITYKPMKSTPGEDAVTIVKMTTKVLEY
YRSLKQ

>gi568815597f:112973407_113224098|GENSCAN_predicted_CDS_4|381_bp
atgtcctacgagcagctgatacagctgtacagtgcgcaccagtggtgccggctgaactgg
ggcctgcggcggaagcagcactctctgctgaagcgcctgcgcaaggccaagacggcggtg
ccgcccatggagaagccggaagtggtgaagactcacctgcgggacatgatcatcgtgccc
gagatggtgggcagcatggtgggcgtctacaacggcaagaccttcaaccaggtggaggtc
aagccggagatgatcagccactacctgggcgagttctccatcacctacaagcccatgaaa
tccactcctggtgaagatgctgtgaccattgttaaaatgaccacaaaggttttagaatat
tacagaagcctaaagcagtga

>gi568815597f:112973407_113224098|GENSCAN_predicted_peptide_5|193_aa
XDQGWMQLASRSLRKLRSPWCGLEVTRSTWALQCLHDQLTLAVMGWTHTAVKLDRKKRTL
SDFQDETHLWAKAKKKGNHCCSMGKDKEVFPEDMPHPQFCSLAAVSLIPHHAVPGESNQL
KQMLMELKAAPISSSHASKSSPLADSHIFTLANDCTWAPALPYQVPVSDSDINSVGENEK
WVPQCYKTLKTEK

>gi568815597f:112973407_113224098|GENSCAN_predicted_CDS_5|582_bp
nnggatcagggctggatgcagttagcttctaggagcttgcgcaagctcagatctccctgg
tgtgggctggaggtgacccgctccacgtgggccctgcagtgcttgcatgaccagctgact
cttgcagtgatgggctggacacatactgctgtgaagctggacaggaaaaagagaacccta
agtgacttccaagatgagacccacctttgggctaaagcaaagaaaaaggggaaccattgt
tgctctatggggaaagataaggaggtctttccggaagacatgccacacccacagttttgc
agtctggctgctgttagtctcattcctcaccacgctgtacctggagagtctaatcagttg
aagcaaatgcttatggagctaaaggcggcacccatctcctcctcccatgcttcaaagtca
tcaccactagctgactcgcatatatttacactggccaatgattgtacctgggcaccagcc
ctgccctaccaggttcctgtttctgactctgatataaattctgtgggcgaaaatgagaaa
tgggttccacaatgctacaagactctcaaaactgaaaaataa