GENSCAN 1.0	Date run:  5-Nov-116	Time: 06:29:52

Sequence gi568815577f:34270479_34470847 : 200369 bp : 44.96% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    252    311   60  2  0   68   40    84 0.549   2.85
 1.02 Intr +  12801  12997  197  2  2   47   66   145 0.410   6.41
 1.03 Intr +  15109  15497  389  1  2   36   95   144 0.282   4.33
 1.04 Intr +  17532  17631  100  1  1   84   58    24 0.115  -1.83
 1.05 Intr +  23203  23278   76  1  1  104   97     5 0.077   2.52
 1.06 Intr +  23651  23825  175  1  1   79   69    49 0.100   1.61
 1.07 Intr +  43314  43437  124  1  1   67   82    85 0.335   5.44
 1.08 Term +  48448  48631  184  1  1   56   32   123 0.588   0.52
 1.09 PlyA +  50952  50957    6                               1.05

 2.00 Prom +  53186  53225   40                              -2.56
 2.01 Init +  55785  55851   67  2  1   63  100    81 0.852   8.03
 2.02 Intr +  67732  67992  261  2  0   66   49   130 0.431   4.36
 2.03 Intr +  68827  68917   91  2  1   70   63   105 0.686   5.25
 2.04 Intr +  83826  83907   82  0  1   49   73    74 0.011   1.64
 2.05 Term +  91605  91673   69  2  0   93   49    47 0.055  -0.76
 2.06 PlyA +  92389  92394    6                               1.05

 3.00 Prom +  98200  98239   40                              -2.66
 3.01 Sngl + 100001 100372  372  1  0   71   44   431 0.952  33.13
 3.02 PlyA + 100520 100525    6                               1.05

 4.09 PlyA - 100919 100914    6                               1.05
 4.08 Term - 105077 104878  200  0  2   78   52   164 0.923   9.36
 4.07 Intr - 105390 105262  129  1  0   74   75   119 0.940   9.87
 4.06 Intr - 112296 112212   85  0  1   71   65    56 0.027   0.99
 4.05 Intr - 118187 118073  115  1  1  123   26   -20 0.064  -4.25
 4.04 Intr - 121234 121108  127  2  1   59  113    96 0.829   8.94
 4.03 Intr - 121648 121550   99  2  0  128   28    50 0.439   3.08
 4.02 Intr - 123478 123366  113  0  2   65   59    79 0.824   2.72
 4.01 Init - 130594 130242  353  1  2  110   34   130 0.760   6.44
 4.00 Prom - 133055 133016   40                              -4.16

 5.04 PlyA - 133285 133280    6                               1.05
 5.03 Term - 137253 137158   96  0  0  105   37    42 0.385  -1.23
 5.02 Intr - 140830 140642  189  1  0    3   89   135 0.412   4.88
 5.01 Init - 141091 140930  162  1  0   74   37   103 0.273   3.53
 5.00 Prom - 142105 142066   40                              -6.56

 6.00 Prom + 142243 142282   40                              -4.26
 6.01 Init + 143572 143634   63  0  0   91   80    26 0.881   3.25
 6.02 Intr + 146532 146565   34  2  1   93   50   106 0.121   5.10
 6.03 Term + 147110 147249  140  0  2  -16   39   155 0.129  -1.67
 6.04 PlyA + 147536 147541    6                              -0.45

 7.04 PlyA - 147548 147543    6                              -0.45
 7.03 Term - 149152 148740  413  2  2   73   54   365 0.952  27.00
 7.02 Intr - 155851 155671  181  1  1   88   36    73 0.218   1.54
 7.01 Init - 165489 165349  141  0  0   71    2   136 0.010   3.43
 7.00 Prom - 172374 172335   40                              -6.16

 8.02 PlyA - 173425 173420    6                               1.05
 8.01 Sngl - 179156 178767  390  2  0   70   46   588 0.816  48.82
 8.00 Prom - 184240 184201   40                              -3.96

 9.00 Prom + 186775 186814   40                              -1.76
 9.01 Init + 189171 189324  154  2  1   75   18    88 0.586  -1.33
 9.02 Term + 190027 190160  134  2  2  104   46    93 0.597   4.95
 9.03 PlyA + 195501 195506    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 108208 108154   55  1  1   35  119    62 0.825   5.45


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815577f:34270479_34470847|GENSCAN_predicted_peptide_1|434_aa
MAVEELATDGTLMKQDSEEVVLALTDFPVKSNWPGLKHSCEDFEAAFESELLVHYCNEDM
HRDPNQSSRVIMLWYLLENAVVRQPRDSQFKCYVNDSRASWCALKKTLIMCSHRAEIAEN
QTQNLIFQLTELQRKLSSQPHRVKVRALIKKEWDPVNWDRKVREDLDEAGDTEPLNSDYF
ASQVADVSPSPVELTSLPPAEMASSNPVAMAFPLSGYSSPPGCFHGLVLTVCGFSRGTMQ
AVSGSTILRLQASGQQRPNSSLNPQHLAQYAWHKIPRREKLIGPFRSGICSYTSQPSGGN
FMQDKPGCQQPISVVPREKGIPMSKRCRVTKSAALDGALSVSEAPSMVSGKCTGVLIAVC
LQAAFPPMCLQCSRDYKGINSKYEKYLMTGTNQSKWTPAALWAYVGEIPIPPTTITNQSP
RDAFKGETEEALLN

>gi568815577f:34270479_34470847|GENSCAN_predicted_CDS_1|1305_bp
atggcagtggaggagctagcgacagatggaaccctgatgaagcaggactcagaggaggtg
gttttggccctgactgactttccagtgaaatctaattggccgggtttaaaacacagctgt
gaggattttgaagccgcctttgaaagtgaactgctggtgcactattgcaatgaggacatg
cacagagatcccaaccagagctcaagagtaataatgctgtggtaccttttggaaaatgct
gttgtcaggcagccccgggactcccagttcaagtgctacgtaaatgactcaagagcttct
tggtgtgccctaaaaaagaccctgatcatgtgtagccacagagctgaaattgctgaaaat
caaacacagaaccttatctttcagctgactgaattacaacgcaaattgagctcccagcct
cacagggtaaaagtgagggcattgattaagaaagaatgggatcctgtaaattgggatagg
aaggtgcgggaagaccttgatgaagctggggacactgagcccctaaattctgattatttt
gcttcgcaagtggcagatgtctccccatctccagtggaattgacctccttacccccagca
gaaatggcctcctcaaacccagtggccatggccttcccactctcagggtacagctcccct
cctggctgctttcatggactggtgttgactgtctgtggcttttccagggggacaatgcaa
gctgtcagtggatctaccattctgaggctgcaagcatcaggacagcagagaccaaattca
tcattgaatcctcaacatctagcacaatatgcctggcataagattcctagaagagagaag
ttgattggcccttttaggtcaggaatttgttcctataccagtcagccctcaggaggcaat
ttcatgcaggataaacctggctgccagcagcccatttctgtggttcccagagaaaaagga
atccccatgagcaaaagatgtagagttaccaagtcagctgcgcttgatggagctctgtct
gtgtctgaagctcccagtatggtttctggcaaatgcacaggtgtgctcatcgcagtgtgc
ctgcaggcggctttcccgcccatgtgtcttcagtgctctagagactataaaggcatcaat
agcaaatacgaaaaatatttaatgactggtaccaaccagtcaaaatggactccagctgct
ttatgggcatatgttggtgagatacctatcccacccacaaccatcaccaaccagagtcca
agagatgctttcaaaggtgaaacagaagaagcattgctcaattaa

>gi568815577f:34270479_34470847|GENSCAN_predicted_peptide_2|189_aa
MGEQNKSLRMQNGSFTKEKTEGTEEGADRLMGEKCMNFSGSINASENQQRAKRAKPRDVT
WLRTLRSLKAGIKPCSCLHFNTKRSSRLQVEAQEALAVLKVLSLKVSGPGHRQAVEGMNV
HRAVDGTDVSAFQSQQQQTNSGISEASYQVACFIDKLKKPYMFGEFLRHGEHSYTTKVFL
LAEFAYLVQ

>gi568815577f:34270479_34470847|GENSCAN_predicted_CDS_2|570_bp
atgggagagcagaataagtctctgagaatgcagaatggctcctttacgaaagagaagacc
gagggaactgaggagggggcagataggctgatgggggaaaagtgcatgaatttttctggt
tccatcaatgcctctgagaatcagcaaagagcaaaaagagcaaagcccagagacgtgacc
tggttgaggaccctacgctccttgaaggcaggaatcaagccttgttcatgtttgcatttc
aacaccaagcgcagctccaggctccaagtcgaggcccaggaagcgctggctgtcctgaag
gtgctcagtctgaaggtgtcgggcccaggccacagacaggcagttgagggcatgaatgtt
catcgagcagtggacggcacagatgtttctgcttttcagagccagcagcaacaaaccaac
agcggcatttcagaagcatcctaccaagttgcttgtttcattgataaactaaagaaaccc
tacatgtttggagagttcttgaggcatggtgaacacagttacaccaccaaagtgttcctc
ctggctgagtttgcctatcttgttcagtga

>gi568815577f:34270479_34470847|GENSCAN_predicted_peptide_3|123_aa
MSTLSNFTQTLEDVFRRIFITYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMF
SFIIVAILVSTVKSKRREHSNDPYHQYIVEDWQEKYKSQILNLEESKATIHENIGAAGFK
MSP

>gi568815577f:34270479_34470847|GENSCAN_predicted_CDS_3|372_bp
atgtctactttatccaatttcacacagacgctggaagacgtcttccgaaggatttttatt
acttatatggacaattggcgccagaacacaacagctgagcaagaggccctccaagccaaa
gttgatgctgagaacttctactatgtcatcctgtacctcatggtgatgattggaatgttc
tctttcatcatcgtggccatcctggtgagcactgtgaaatccaagagacgggaacactcc
aatgacccctaccaccagtacattgtagaggactggcaggaaaagtacaagagccaaatc
ttgaatctagaagaatcgaaggccaccatccatgagaacattggtgcggctgggttcaaa
atgtccccctga

>gi568815577f:34270479_34470847|GENSCAN_predicted_peptide_4|406_aa
MPRFASPLLRNVIIRSQFDGIKRKQCLQYLKTLRTLQYDGFKTVYFGETNIPESLVTGED
ISDGYFIQTPTWCIVHAAGSQGWVPWKYRVFLRDELCIKQEDSLFSEFCDVVRKAYGNHS
LIKYWSTFCVPGWVRQGQEYQGKQAWTLKVQVWCGDSPPSILWLHSDTDEICMGELPHGV
MVRVFPAVDCVKRLNLFFTPEVITMNITSSRVASHVGRCGCRSVWRMKSTRWSPLKLTFT
WQNLEGNTKGMSRKCLIRVYPMFTAQHKDAVETHGKRQKCGLRRTQHKGSRGQEHSQDSP
GTNTVGLNQSWAPPGPRASRNTLLNGLTAPDGQVQQGRPAAEAPAPGRAQTTTSTVLPGK
TTGPEMHRYVLRRSGPVPPTRVHYSVRRRSGPGQKTWGALLTAQAQ

>gi568815577f:34270479_34470847|GENSCAN_predicted_CDS_4|1221_bp
atgcctcgctttgcaagccctcttttaagaaatgtcattatcagaagtcaatttgatggc
atcaagaggaagcaatgcctccaatatctgaaaaccctgagaacactgcaatatgatgga
tttaagaccgtatattttggggaaaccaatatcccagaaagtctcgtaactggggaagat
attagtgatggatatttcatacaaaccccaacttggtgtattgtgcatgctgcgggtagt
caaggatgggtgccttggaaatatcgggtgttcctaagagacgagctgtgtatcaaacaa
gaagacagcctcttctctgagttctgtgatgtggtgaggaaggcctatggaaatcattca
ctcatcaaatactggagcaccttctgtgtgcctggctgggtgcgtcagggccaggagtac
caaggaaaacaagcctggaccctcaaggtccaggtctggtgtggagactctccaccgtcc
atcctctggcttcactctgacacagatgagatctgcatgggggagctccctcatggtgtg
atggtgcgtgtgtttccggcagtggactgtgtgaaacggctgaacctcttcttcacgcct
gaggtcatcaccatgaacataacatcatcacgtgtggcatcccatgtgggacgctgtggc
tgccgcagtgtctggcgcatgaagagcacacgctggagtccactcaagctgacatttaca
tggcagaatctagaagggaataccaaagggatgagtaggaaatgtttgataagagtatac
ccgatgtttactgctcagcataaagacgcagtggagacgcacggcaagaggcagaagtgt
ggactgagaaggacgcagcacaagggcagcagaggtcaagaacattcacaggactctccg
gggaccaacaccgtaggcttgaaccaatcctgggccccgcccgggccacgtgccagccgg
aacacgctgctcaacgggttgacggcgcccgacggccaggtccagcaggggcgccccgca
gcggaggctccagcgcctggccgcgcacaaaccacgacttctaccgtcctgccggggaaa
actacaggtcccgaaatgcaccgctacgtgctcaggcgcagtgggccggtgccgccgacg
agagtgcactactccgtgcgcaggcgcagtgggcccgggcagaagacctggggcgcgctg
ctcactgcgcaggcgcagtga

>gi568815577f:34270479_34470847|GENSCAN_predicted_peptide_5|148_aa
MGSVPLQEETPDPPLSLHLVRTQQEVFYPRTRKQVLTGYRICQHLDLRLPASRTAARLIP
SDSCSSGKRFQYRPSSTPTQKTVTEVFKERTEREQKGTEGEMKTERGGHVEMESSRTVRF
QEKPEMGVCLNKPGAEEGRREFGDYPDS

>gi568815577f:34270479_34470847|GENSCAN_predicted_CDS_5|447_bp
atgggatcagtgcccttacaggaagagacaccagacccccctctctctctgcaccttgtg
aggacacagcaagaagtgttctacccgcgaaccaggaagcaggtcctcaccgggtaccga
atctgccaacaccttgatctcagacttccagcttccagaactgcggcaagactgattcct
tcagactcctgcagcagcggaaagagattccagtaccgaccaagctcaaccccaactcag
aaaacggtgactgaggtcttcaaagagagaacagaaagggaacaaaaagggactgaagga
gaaatgaaaacagaacgtgggggccacgtggaaatggaaagttccagaacggtgaggttc
caggagaagccagagatgggggtttgccttaacaaaccaggagctgaggaaggtcgaaga
gaattcggtgattatcccgactcatga

>gi568815577f:34270479_34470847|GENSCAN_predicted_peptide_6|78_aa
MGAELSFGRILVRRFSNWGRQDDDNDDDDNDDASSPPPLMPTSTTTTYATTVSIITTTNN
ITNSNTAININHHHHQNH

>gi568815577f:34270479_34470847|GENSCAN_predicted_CDS_6|237_bp
atgggagctgagctgtcttttgggagaatcctagtgagaaggttctccaactggggccgc
caagatgatgacaatgatgatgacgacaatgatgatgcatcatcaccaccaccattaatg
ccaacatcaaccaccaccacctacgccaccaccgttagcatcataaccaccaccaataac
atcaccaacagcaacactgccatcaacataaaccatcaccaccaccaaaaccattag

>gi568815577f:34270479_34470847|GENSCAN_predicted_peptide_7|244_aa
MGKDFTSKTPKAMAAKAKIDKWDLIKLKSFCTAKETTIRVNRQPTEWDQGHKILLILHLL
HHLHLTDEETEAHKDEGAGPGSCSKDVAGARALTPSPYHCHEPLIITGAKWTPHEASNQT
QASTLLGLLLGDHTEGRNDTNSTRALKVPDGTSAAWYILTIIGIYAVIFVFRLASNILRK
NDKSLEDVYYSNLTSELKMTGLQGKVAKCSTLSISNRAVLQPCQAHLGAKGGSSGPQTAT
PETP

>gi568815577f:34270479_34470847|GENSCAN_predicted_CDS_7|735_bp
atgggcaaggacttcacgtctaaaacaccaaaagcaatggcagcaaaagccaaaattgac
aaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtg
aacaggcaacctacagaatgggaccaaggacataagatcctgctcatccttcacctcctt
caccaccttcacctcacagatgaggaaactgaggctcacaaagatgagggggctggccca
gggtcatgcagcaaggatgtggctggggccagagccctgactcccagcccttatcactgc
cacgagccccttattatcacgggggccaagtggactccccatgaagcctccaaccagacc
caggccagcaccctcctggggctcctgctgggtgaccacacagaggggaggaatgacacc
aactccaccagggctctgaaggtgccagacggaaccagcgctgcctggtatatactcacc
atcatcggcatctacgcggtgattttcgtcttccggctggccagcaacatcctcagaaag
aatgacaagtccttagaagatgtttattactcaaatctgacctctgaactcaaaatgaca
gggctgcagggcaaggtcgccaagtgctccaccctgtctatcagcaacagagctgtgctg
cagccctgccaggcccacctgggggcaaagggcggaagcagcgggccccaaaccgcaacc
ccagagaccccctga

>gi568815577f:34270479_34470847|GENSCAN_predicted_peptide_8|129_aa
MILSNTTAVTPFLTKLWQETVQQGGNMSGLARRSPRSSDGKLEALYVLMVLGFFGFFTLG
IMLSYIRSKKLEHSNDPFNVYIESDAWQEKDKAYVQARVLESYRSCYVVENHLAIEQPNT
HLPETKPSP

>gi568815577f:34270479_34470847|GENSCAN_predicted_CDS_8|390_bp
atgatcctgtctaacaccacagcggtgacgccctttctgaccaagctgtggcaggagaca
gttcagcagggtggcaacatgtcgggcctggcccgcaggtccccccgcagcagtgacggc
aagctggaggccctctacgtcctcatggtactgggattcttcggcttcttcaccctgggc
atcatgctgagctacatccgctccaagaagctggagcactcgaacgacccattcaacgtc
tacatcgagtccgatgcctggcaagagaaggacaaggcctatgtccaggcccgggtcctg
gagagctacaggtcgtgctatgtcgttgaaaaccatctggccatagaacaacccaacaca
caccttcctgagacgaagccttccccatga

>gi568815577f:34270479_34470847|GENSCAN_predicted_peptide_9|95_aa
MGAGGASQSRQASRPTPPTRTAQPRVPRDHPRPAPAPPGPPHSAPQTNTNARHFFLGFDL
GVLMGTRVIGGPPRGAPMCPVHQAEPALPYSVGAK

>gi568815577f:34270479_34470847|GENSCAN_predicted_CDS_9|288_bp
atgggggcgggcggggcctcccagagccgccaggcgtcccgccccactccgcccacacgc
acggcccagcccagggttccccgggaccaccccagaccagccccggcccccccgggtcct
ccacactctgcaccccagaccaacaccaacgcgcgtcacttcttcctgggcttcgacctc
ggtgttctcatggggacgagggtgattggaggccctccaaggggtgcaccgatgtgtcct
gtgcaccaggcagaaccagcattgccctacagtgtgggtgcaaaatga