FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5180, 130 aa
  1>>>pF1KB5180 130 - 130 aa - 130 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8503+/-0.000741; mu= 14.5071+/- 0.045
 mean_var=68.6846+/-13.303, 0's: 0 Z-trim(109.4): 9  B-trim: 39 in 1/49
 Lambda= 0.154755
 statistics sampled from 10855 (10861) to 10855 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.334), width:  16
 Scan time:  1.550

The best scores are:                                      opt bits E(32554)
CCDS7356.1 RPS24 gene_id:6229|Hs108|chr10          ( 130)  849 197.5 1.9e-51
CCDS7355.1 RPS24 gene_id:6229|Hs108|chr10          ( 133)  849 197.5   2e-51
CCDS44443.1 RPS24 gene_id:6229|Hs108|chr10         ( 289)  849 197.8 3.5e-51


>>CCDS7356.1 RPS24 gene_id:6229|Hs108|chr10               (130 aa)
 initn: 849 init1: 849 opt: 849  Z-score: 1037.0  bits: 197.5 E(32554): 1.9e-51
Smith-Waterman score: 849; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB5 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT
               70        80        90       100       110       120

              130
pF1KB5 AKANVGAGKK
       ::::::::::
CCDS73 AKANVGAGKK
              130

>>CCDS7355.1 RPS24 gene_id:6229|Hs108|chr10               (133 aa)
 initn: 849 init1: 849 opt: 849  Z-score: 1036.9  bits: 197.5 E(32554): 2e-51
Smith-Waterman score: 849; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB5 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT
               70        80        90       100       110       120

              130   
pF1KB5 AKANVGAGKK   
       ::::::::::   
CCDS73 AKANVGAGKKPKE
              130   

>>CCDS44443.1 RPS24 gene_id:6229|Hs108|chr10              (289 aa)
 initn: 849 init1: 849 opt: 849  Z-score: 1032.3  bits: 197.8 E(32554): 3.5e-51
Smith-Waterman score: 849; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB5 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT
               70        80        90       100       110       120

              130                                                  
pF1KB5 AKANVGAGKK                                                  
       ::::::::::                                                  
CCDS44 AKANVGAGKKMRELGLGVQALGRISQEERCTDVKNSKARESRGVVWQVEVPGPWSVWTCG
              130       140       150       160       170       180




130 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:25:15 2016 done: Sat Nov  5 06:25:15 2016
 Total Scan time:  1.550 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]