Result of FASTA (ccds) for pF1KB5167
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5167, 520 aa
  1>>>pF1KB5167 520 - 520 aa - 520 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8366+/-0.000626; mu= 17.6078+/- 0.038
 mean_var=93.1371+/-18.533, 0's: 0 Z-trim(114.1): 21  B-trim: 736 in 1/49
 Lambda= 0.132896
 statistics sampled from 14662 (14683) to 14662 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.451), width:  16
 Scan time:  2.730

The best scores are:                                      opt bits E(32554)
CCDS10963.1 KLHDC4 gene_id:54758|Hs108|chr16       ( 520) 3592 698.3 5.3e-201
CCDS54050.1 KLHDC4 gene_id:54758|Hs108|chr16       ( 463) 3005 585.8 3.7e-167
CCDS54051.1 KLHDC4 gene_id:54758|Hs108|chr16       ( 489) 2220 435.3 7.7e-122


>>CCDS10963.1 KLHDC4 gene_id:54758|Hs108|chr16            (520 aa)
 initn: 3592 init1: 3592 opt: 3592  Z-score: 3722.1  bits: 698.3 E(32554): 5.3e-201
Smith-Waterman score: 3592; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)

               10        20        30        40        50        60
pF1KB5 MGKKGKKEKKGRGAEKTAAKMEKKVSKRSRKEEEDLEALIAHFQTLDAKRTQTVELPCPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGKKGKKEKKGRGAEKTAAKMEKKVSKRSRKEEEDLEALIAHFQTLDAKRTQTVELPCPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 PSPRLNASLSVHPEKDELILFGGEYFNGQKTFLYNELYVYNTRKDTWTKVDIPSPPPRRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PSPRLNASLSVHPEKDELILFGGEYFNGQKTFLYNELYVYNTRKDTWTKVDIPSPPPRRC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 AHQAVVVPQGGGQLWVFGGEFASPNGEQFYHYKDLWVLHLATKTWEQVKSTGGPSGRSGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AHQAVVVPQGGGQLWVFGGEFASPNGEQFYHYKDLWVLHLATKTWEQVKSTGGPSGRSGH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 RMVAWKRQLILFGGFHESTRDYIYYNDVYAFNLDTFTWSKLSPSGTGPTPRSGCQMSVTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RMVAWKRQLILFGGFHESTRDYIYYNDVYAFNLDTFTWSKLSPSGTGPTPRSGCQMSVTP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 VAMAPNHQTLFFGGVCDEEEEESLSGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VAMAPNHQTLFFGGVCDEEEEESLSGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 RKEEPEGGSRPACGGAGTQGPVQLVKEVVAEDGTVVTIKQVLTAPGSAGQPRSEDEDSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RKEEPEGGSRPACGGAGTQGPVQLVKEVVAEDGTVVTIKQVLTAPGSAGQPRSEDEDSLE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 EAGSPAPGPCPRSNAMLAVKHGVLYVYGGMFEAGDRQVTLSDLHCLDLHRMEAWKALVEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EAGSPAPGPCPRSNAMLAVKHGVLYVYGGMFEAGDRQVTLSDLHCLDLHRMEAWKALVEM
              430       440       450       460       470       480

              490       500       510       520
pF1KB5 DPETQEWLEETDSEEDSEEVEGAEGGVDDEDSGEESGAED
       ::::::::::::::::::::::::::::::::::::::::
CCDS10 DPETQEWLEETDSEEDSEEVEGAEGGVDDEDSGEESGAED
              490       500       510       520

>>CCDS54050.1 KLHDC4 gene_id:54758|Hs108|chr16            (463 aa)
 initn: 3005 init1: 3005 opt: 3005  Z-score: 3114.6  bits: 585.8 E(32554): 3.7e-167
Smith-Waterman score: 3082; 89.0% identity (89.0% similar) in 520 aa overlap (1-520:1-463)

               10        20        30        40        50        60
pF1KB5 MGKKGKKEKKGRGAEKTAAKMEKKVSKRSRKEEEDLEALIAHFQTLDAKRTQTVELPCPP
       :::::::::::::::::::::::::::::::::                           
CCDS54 MGKKGKKEKKGRGAEKTAAKMEKKVSKRSRKEE---------------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KB5 PSPRLNASLSVHPEKDELILFGGEYFNGQKTFLYNELYVYNTRKDTWTKVDIPSPPPRRC
                                     ::::::::::::::::::::::::::::::
CCDS54 ------------------------------TFLYNELYVYNTRKDTWTKVDIPSPPPRRC
                                          40        50        60   

              130       140       150       160       170       180
pF1KB5 AHQAVVVPQGGGQLWVFGGEFASPNGEQFYHYKDLWVLHLATKTWEQVKSTGGPSGRSGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AHQAVVVPQGGGQLWVFGGEFASPNGEQFYHYKDLWVLHLATKTWEQVKSTGGPSGRSGH
            70        80        90       100       110       120   

              190       200       210       220       230       240
pF1KB5 RMVAWKRQLILFGGFHESTRDYIYYNDVYAFNLDTFTWSKLSPSGTGPTPRSGCQMSVTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RMVAWKRQLILFGGFHESTRDYIYYNDVYAFNLDTFTWSKLSPSGTGPTPRSGCQMSVTP
           130       140       150       160       170       180   

              250       260       270       280       290       300
pF1KB5 QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFS
           190       200       210       220       230       240   

              310       320       330       340       350       360
pF1KB5 VAMAPNHQTLFFGGVCDEEEEESLSGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VAMAPNHQTLFFGGVCDEEEEESLSGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRG
           250       260       270       280       290       300   

              370       380       390       400       410       420
pF1KB5 RKEEPEGGSRPACGGAGTQGPVQLVKEVVAEDGTVVTIKQVLTAPGSAGQPRSEDEDSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RKEEPEGGSRPACGGAGTQGPVQLVKEVVAEDGTVVTIKQVLTAPGSAGQPRSEDEDSLE
           310       320       330       340       350       360   

              430       440       450       460       470       480
pF1KB5 EAGSPAPGPCPRSNAMLAVKHGVLYVYGGMFEAGDRQVTLSDLHCLDLHRMEAWKALVEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EAGSPAPGPCPRSNAMLAVKHGVLYVYGGMFEAGDRQVTLSDLHCLDLHRMEAWKALVEM
           370       380       390       400       410       420   

              490       500       510       520
pF1KB5 DPETQEWLEETDSEEDSEEVEGAEGGVDDEDSGEESGAED
       ::::::::::::::::::::::::::::::::::::::::
CCDS54 DPETQEWLEETDSEEDSEEVEGAEGGVDDEDSGEESGAED
           430       440       450       460   

>>CCDS54051.1 KLHDC4 gene_id:54758|Hs108|chr16            (489 aa)
 initn: 2220 init1: 2220 opt: 2220  Z-score: 2300.9  bits: 435.3 E(32554): 7.7e-122
Smith-Waterman score: 3302; 94.0% identity (94.0% similar) in 520 aa overlap (1-520:1-489)

               10        20        30        40        50        60
pF1KB5 MGKKGKKEKKGRGAEKTAAKMEKKVSKRSRKEEEDLEALIAHFQTLDAKRTQTVELPCPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MGKKGKKEKKGRGAEKTAAKMEKKVSKRSRKEEEDLEALIAHFQTLDAKRTQTVELPCPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 PSPRLNASLSVHPEKDELILFGGEYFNGQKTFLYNELYVYNTRKDTWTKVDIPSPPPRRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PSPRLNASLSVHPEKDELILFGGEYFNGQKTFLYNELYVYNTRKDTWTKVDIPSPPPRRC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 AHQAVVVPQGGGQLWVFGGEFASPNGEQFYHYKDLWVLHLATKTWEQVKSTGGPSGRSGH
       :::::::::::::::::::::::::::::::::::::::::::::::::           
CCDS54 AHQAVVVPQGGGQLWVFGGEFASPNGEQFYHYKDLWVLHLATKTWEQVK-----------
              130       140       150       160                    

              190       200       210       220       230       240
pF1KB5 RMVAWKRQLILFGGFHESTRDYIYYNDVYAFNLDTFTWSKLSPSGTGPTPRSGCQMSVTP
                           ::::::::::::::::::::::::::::::::::::::::
CCDS54 --------------------DYIYYNDVYAFNLDTFTWSKLSPSGTGPTPRSGCQMSVTP
                         170       180       190       200         

              250       260       270       280       290       300
pF1KB5 QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFS
     210       220       230       240       250       260         

              310       320       330       340       350       360
pF1KB5 VAMAPNHQTLFFGGVCDEEEEESLSGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VAMAPNHQTLFFGGVCDEEEEESLSGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRG
     270       280       290       300       310       320         

              370       380       390       400       410       420
pF1KB5 RKEEPEGGSRPACGGAGTQGPVQLVKEVVAEDGTVVTIKQVLTAPGSAGQPRSEDEDSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RKEEPEGGSRPACGGAGTQGPVQLVKEVVAEDGTVVTIKQVLTAPGSAGQPRSEDEDSLE
     330       340       350       360       370       380         

              430       440       450       460       470       480
pF1KB5 EAGSPAPGPCPRSNAMLAVKHGVLYVYGGMFEAGDRQVTLSDLHCLDLHRMEAWKALVEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EAGSPAPGPCPRSNAMLAVKHGVLYVYGGMFEAGDRQVTLSDLHCLDLHRMEAWKALVEM
     390       400       410       420       430       440         

              490       500       510       520
pF1KB5 DPETQEWLEETDSEEDSEEVEGAEGGVDDEDSGEESGAED
       ::::::::::::::::::::::::::::::::::::::::
CCDS54 DPETQEWLEETDSEEDSEEVEGAEGGVDDEDSGEESGAED
     450       460       470       480         




520 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:22:37 2016 done: Sat Nov  5 06:22:37 2016
 Total Scan time:  2.730 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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