GENSCAN 1.0	Date run:  5-Nov-116	Time: 06:21:08

Sequence gi568815582f:46784716_47028994 : 244279 bp : 45.05% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1758   1884  127  2  1   71   98    48 0.445   4.42
 1.02 Term +   5459   5646  188  0  2   70   54   114 0.824   3.85
 1.03 PlyA +   7202   7207    6                               1.05

 2.05 PlyA -  11993  11988    6                               1.05
 2.04 Term -  18355  18237  119  2  2  112   43   110 0.982   7.60
 2.03 Intr -  21305  21288   18  0  0  103   94    21 0.618   0.78
 2.02 Intr -  46265  46100  166  2  1   -6   48   200 0.010   6.13
 2.01 Init -  46434  46369   66  0  0   59   94   104 0.909   9.17
 2.00 Prom -  49265  49226   40                              -5.16

 3.00 Prom +  55178  55217   40                              -3.46
 3.01 Init +  59167  59561  395  0  2   51   37   264 0.647  13.82
 3.02 Intr +  59626  59743  118  1  1   33    1   159 0.866   2.17
 3.03 Intr +  59763  59918  156  2  0   39   72   155 0.188   9.21
 3.04 Intr +  87625  87748  124  0  1   60  106    48 0.012   3.96
 3.05 Intr +  99209  99297   89  0  2   61   80   145 0.492  10.69
 3.06 Intr +  99409  99493   85  0  1   71   26    67 0.446  -1.81
 3.07 Intr +  99548  99623   76  0  1   87   45    51 0.751  -0.73
 3.08 Intr +  99979 100243  265  1  1   87   88   533 0.968  50.72
 3.09 Intr + 112933 113022   90  0  0  122   99   138 0.999  18.49
 3.10 Intr + 115967 116075  109  1  1  115   68   111 0.994  11.66
 3.11 Intr + 122127 122260  134  1  2  116   46   267 0.571  25.66
 3.12 Intr + 124969 125212  244  0  1   61   46   391 0.402  29.27
 3.13 Intr + 130010 130139  130  0  1   58   58    89 0.551   2.65
 3.14 Intr + 133857 134042  186  0  0   17   53   342 0.259  22.40
 3.15 Intr + 137527 137701  175  1  1   95   72   261 0.927  25.14
 3.16 Intr + 139674 139829  156  2  0   92   41   150 0.997  10.91
 3.17 Intr + 142210 142322  113  0  2   99   80    94 0.706   8.88
 3.18 Term + 144192 144282   91  0  1  107   55   189 0.793  14.69
 3.19 PlyA + 144698 144703    6                               1.05

 4.13 PlyA - 147802 147797    6                               1.05
 4.12 Term - 172505 172314  192  2  0   25   37   147 0.887   0.72
 4.11 Intr - 174415 174288  128  2  2   65   84   122 0.963   9.90
 4.10 Intr - 174704 174560  145  2  1   71   99   102 0.995   9.46
 4.09 Intr - 179852 179766   87  2  0   67  101    68 0.964   6.17
 4.08 Intr - 180092 179896  197  0  2   71   45   141 0.990   7.23
 4.07 Intr - 182931 182798  134  2  2   52   95    75 0.516   4.89
 4.06 Intr - 183449 183369   81  1  0   90  106    17 0.327   2.45
 4.05 Intr - 186857 186634  224  2  2   79    7   123 0.350   0.23
 4.04 Intr - 187240 187181   60  1  0   62  106    39 0.796   2.03
 4.03 Intr - 189116 188780  337  1  1   40   65   378 0.746  26.22
 4.02 Intr - 211411 211335   77  1  2   47   74   118 0.043   4.61
 4.01 Init - 232024 231965   60  1  0   91   70    34 0.440   3.19

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  46265  46044  222  2  0   -6   48   251 0.928   8.62


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815582f:46784716_47028994|GENSCAN_predicted_peptide_1|104_aa
MAENFPRLGKKREIWIQEAQRMPNKKNPKRSTQRHIIIKLTKAKWIRGWCTAWQLRMQTW
LTGCSAPPPRWPEESAPARLHSGGGGDPQAARSSPWAGGEEREK

>gi568815582f:46784716_47028994|GENSCAN_predicted_CDS_1|315_bp
atggctgaaaacttcccaagactggggaagaaaagagaaatctggatccaggaagcccaa
aggatgccaaataagaagaatccaaagagatctacacagagacatattataatcaaacta
acaaaagccaagtggattcgtggctggtgcacagcgtggcagctgaggatgcagacgtgg
ctcacgggctgctcggcgccaccgccacgttggccagaggagtcggcgccagccaggctg
cacagtgggggcggcggggatccccaagcagctcggagtagcccctgggccggcggggaa
gaacgagaaaaatga

>gi568815582f:46784716_47028994|GENSCAN_predicted_peptide_2|122_aa
MSATRAKKVKMATKSCPECDQQILGPAGGGGDPGPVGLHRGVSREKPGAVARQRPPGGGQ
TAKPLLAVSRPLEERAFGLSFEKEKQEKEIDIYANLSDEKAFVFSVALAEINRKIINQRL
IL

>gi568815582f:46784716_47028994|GENSCAN_predicted_CDS_2|369_bp
atgtctgcaactcgagccaagaaagtgaagatggccaccaaatcatgccccgagtgcgac
caacagatcctggggcccgccggcggcggcggggatccggggccggtcgggctgcaccga
ggggtttcccgggaaaagcccggggccgtggcccgccagcgtccacctggcggcggccag
acggccaagccccttcttgctgtgtcccggccactggaggagcgcgcctttggtttatcc
tttgaaaaagagaaacaggaaaaggaaattgacatctatgctaacctgtctgatgaaaag
gctttcgtgttttcagtcgccttggcagaaataaatagaaaaattatcaatcaaagactt
attctctga

>gi568815582f:46784716_47028994|GENSCAN_predicted_peptide_3|911_aa
MNSSFLDLKSFKPGEAEAEAVNASFVCPPVARRWPAGGPRRRPTPGRSILSLCQMPRALG
HARGQEQGRYRLVEEEVAVEELLLLFRVGPAPARVVQARQVADQSLGRPSRDPREAEVEA
VRTASSTQLGASAVPVLKDGAEEILEHVVGLLVGRHAAHGPEYGWPGLSTRREATPGAQL
RVQLGQRLGHWVLVAAQVGKLVLRREASFSAPRLSEKGMCGRSFRSCFHIFGYLFSNAPL
YWYQFTVLVHFHAADKDIPETGKKTLVGSRRHRVALDDETRGDDCTIQQPASSQALQPLN
WDKEPAQPRPRSDERSRLLSGPAAPEQPGELQGPGGSAQARGGPDGGGVSLRKRAMQRAA
ALVRRGCGPRTPSSWGRSQSSAAAEASAVLKVRPERSRRERILTLESMNPQVKAVEYAVR
GPIVLKAGEIELELQRGIKKPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLDSP
SFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTT
GASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNV
NELRRAVQEAKDHCDPKVLCIINPGNPTGQTMSGERPCPCLVELMGASLGRKKLTLHPVA
TANASLFTICCCSLFEDPLVTVPAVPPQVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVE
LASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPP
VAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAV
EAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVK
DFHINFLEKYA

>gi568815582f:46784716_47028994|GENSCAN_predicted_CDS_3|2736_bp
atgaactcgtcgttcctagacttgaagagtttcaaaccgggagaggccgaggcagaagca
gtaaatgcctccttcgtttgcccccctgttgcacggagatggcccgcaggtggtcctcgt
cgccgccccacaccaggaaggtctatactgtccttgtgccagatgccgcgggcgttgggc
catgcccgaggccaggagcaggggcggtacaggctcgtggaagaggaagtggctgtcgag
gagctgctgttgctgttccgcgtcggtcctgctcctgcgcgcgtcgtccaggcccgccag
gtcgccgaccagtctctagggcgtccatcgcgggacccacgggaggcagaagtggaggcc
gtgcgcaccgcgagctcaacacagttgggggccagtgcggtgccggtcctcaaggatggg
gccgaagagatccttgaacacgtcgtaggactcctcgtcggccgccacgcggcccacggc
cctgagtacgggtggcccgggctgtccacgcggcgcgaagccacccctggcgcgcagctc
cgcgttcagctggggcagcgcctcggccactgggtcttggtggccgctcaggtcgggaaa
ctcgtcctgcgccgggaggcgagcttcagcgccccgcggctgtcggagaagggcatgtgc
gggcgctcgttccgaagttgctttcacattttcgggtatcttttcagcaacgccccactc
tactggtaccaatttactgtattagtccattttcatgctgctgataaagacatacctgag
actgggaagaaaactctggtgggcagccgcaggcaccgtgtggccttggatgatgaaact
cggggcgatgactgcaccatccagcagcctgcgtcctcgcaggctctccagcccctcaac
tgggacaaagagcccgcccagccccggccacgttcggacgaacgctcccgcctactgtcc
ggtcccgccgctccggagcagccaggggaactacagggcccaggaggcagcgcacaggcc
cggggcggccccgacggtggtggggtttctctccgcaagcgcgcgatgcagcgggcggcg
gcgctggtccggcggggctgtggtccccggacccccagctcctggggccgcagccagagc
agcgcggccgccgaggcctcggcggtgctcaaggtgcggcccgagcgcagccggcgcgag
cgcatcctcacgctggagtccatgaacccgcaggtgaaggcggtggagtacgccgtgcgg
ggacccatcgtgctcaaggccggcgagatcgagctcgagctgcagcggggtatcaaaaag
ccattcacagaggtcatccgagccaacatcggggacgcccaggctatggggcagcagcca
atcaccttcctccggcaggtgatggcactatgcacctacccaaacctgctggacagcccc
agcttcccagaagatgctaagaaacgtgcccggcggatcctgcaggcttgtggcgggaac
agcctggggtcctacagtgctagccagggtgtcaactgcatccgtgaagatgtggctgcc
tacatcaccaggagggatggcggtgtgcctgcggaccccgacaacatctacctgaccacg
ggagctagtgacggcatttctacgatcctgaagatcctcgtctccgggggcggcaagtca
cggacaggtgtgatgatccccatcccacaatatcccctctattcagctgtcatctctgag
ctcgacgccatccaggtgaattactacctggacgaggagaactgctgggcgctgaatgtg
aatgagctccggcgggcggtgcaggaggccaaagaccactgtgatcctaaggtgctctgc
ataatcaaccctgggaaccccacagggcagacgatgagcggggagaggccttgtccctgc
cttgtggagctcatgggtgcctctctggggagaaagaagctaactcttcacccggtggcc
acagccaatgcgagtctcttcaccatctgctgctgcagcctctttgaggaccctttggtg
accgtccctgccgtgcccccgcaggtgtaccaggacaacgtgtactctccagattgcaga
ttccactccttcaagaaggtgctgtacgagatggggcccgagtactccagcaacgtggag
ctcgcctccttccactccacctccaagggctacatgggcgagtgtggttacagaggaggc
tacatggaggtgatcaacctgcaccctgagatcaagggccagctggtgaagctgctgtcg
gtgcgcctgtgccccccagtgtctgggcaggccgccatggacattgtcgtgaaccccccg
gtggcaggagaggagtcctttgagcaattcagccgagagaaggagtcggtcctgggtaat
ctggccaaaaaagcaaagctgacggaagacctgtttaaccaagtcccaggaattcactgc
aaccccttgcagggggccatgtacgccttccctcggatcttcattcctgccaaagctgtg
gaggctgctcaggcccatcaaatggctccagacatgttctactgcatgaagctcctggag
gagactggcatctgtgtcgtgcccggcagtggctttgggcagagggaaggcacttaccac
ttcaggatgactatcctccctccagtggagaagctgaaaacggtgctgcagaaggtgaaa
gacttccacatcaacttcctggagaagtacgcgtga

>gi568815582f:46784716_47028994|GENSCAN_predicted_peptide_4|573_aa
MDQSTGPDQADVDGWLCGHLLPNSLDTGDRGYNYDPNYLHLADPMGRLDLEENREPGPLF
NTSTPVAAPRALGGGLCTATSRRTVRWVKVQPRPRFPLAVSLGLCRRRRRLWARLRSVCF
ATFSPSTARPAAMANVADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFK
EISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRN
GRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVR
IMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHG
QRITFTGEADQAPGVEPGDIVLLLQEKEHEKYFLLVRNRLDLFGVPGATLNTGEVKGIMV
FQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPPGKVIEPGCVRVVRGEGMPQ
YRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNIIGETEEVELQEFDST
RGSGGGQRREAYNDSSDEESSSHHGPGVQCAHQ

>gi568815582f:46784716_47028994|GENSCAN_predicted_CDS_4|1722_bp
atggaccagtccaccggacctgaccaggcagacgtggatggatggctgtgtggacacctg
ttgcccaactctctggacacaggtgaccgaggatacaattatgaccccaactacctgcac
ttagcagatcccatgggccgcctggacctggaggaaaacagagaacctggcccactcttc
aatacttcgaccccagtggccgcgcctcgggcgctcgggggcgggctctgcacagcgacg
tcacggcgcaccgtgcgctgggtcaaagttcagccccgcccccgcttccccctcgctgtc
tccctcggcctgtgccgccgccgacgccgcttgtgggcccgactccgctctgtctgcttc
gccaccttctccccgagcactgcccggccggccgccatggctaacgtggctgacacgaag
ctgtacgacatcctgggcgtcccgcccggcgccagcgagaacgagctgaagaaggcatac
agaaagttagccaaggaatatcatcctgataagaatccaaatgcaggagacaaatttaaa
gaaataagttttgcatatgaagtactatcaaatcctgagaagcgtgagttatatgacaga
tacggagagcaaggtcttcgggaaggcagcggcggaggtggtggcatggatgatattttc
tctcacatttttggtgggggattgttcggcttcatgggcaatcagagtagaagtcgaaat
ggcagaagaagaggagaggacatgatgcatccactcaaagtatctttagaagatctgtat
aatggcaagacaaccaaactacaacttagcaagaatgtgctctgtagtgcatgcagtggc
caaggcggaaagtctggagctgtccaaaagtgtagtgcttgtcgaggtcgaggtgtgcgc
atcatgatcagacagctggctccagggatggtacaacagatgcagtctgtgtgctctgat
tgtaatggagaaggagaggtaattaatgaaaaagaccgctgtaaaaaatgtgaagggaag
aaggtgattaaagaagtcaagattcttgaagtccacgtagacaaaggcatgaaacatgga
cagagaattacattcactggggaagcagaccaggccccaggagtggaacccggagacatt
gttcttttgctacaggagaaagaacatgagaagtacttcttgcttgtgagaaataggtta
gatctgtttggagtccctggagcaacactgaacactggtgaagttaagggcatcatggta
tttcagagagatgggaatgatttgcacatgacatataaaataggacttgttgaagctcta
tgtggatttcagttcacatttaagcaccttgatggacgtcagattgtggtgaaatacccc
cctggcaaagtaattgaaccagggtgtgttcgtgtagttcgaggtgaagggatgccgcag
tatcgtaatccctttgaaaaaggtgatctttacataaagtttgatgtgcagtttcctgaa
aacaactggatcaacccagacaagctttctgaactagaagatcttctgccatctagaccg
gaagttcctaacataattggagaaacagaggaggtagagcttcaggaatttgatagcact
cgaggctcaggaggtggtcagaggcgtgaagcctataatgatagctctgatgaagaaagc
agcagccatcatggacctggagtgcagtgtgcccatcagtaa