Result of FASTA (omim) for pF1KB5004
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5004, 382 aa
  1>>>pF1KB5004 382 - 382 aa - 382 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6859+/-0.000329; mu= 19.7302+/- 0.020
 mean_var=63.8449+/-13.021, 0's: 0 Z-trim(114.5): 108  B-trim: 1300 in 1/53
 Lambda= 0.160513
 statistics sampled from 24294 (24417) to 24294 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.286), width:  16
 Scan time:  7.520

The best scores are:                                      opt bits E(85289)
NP_476502 (OMIM: 611248) kelch domain-containing p ( 382) 2731 641.2 1.2e-183
NP_006758 (OMIM: 600574,615670,616564) leucine-zip ( 840)  280 73.9 1.6e-12
XP_016869672 (OMIM: 605962) PREDICTED: rab9 effect ( 241)  256 67.9 2.9e-11
NP_001167624 (OMIM: 605962) rab9 effector protein  ( 321)  256 68.0 3.6e-11
XP_005251698 (OMIM: 605962) PREDICTED: rab9 effect ( 329)  256 68.0 3.6e-11
XP_011516422 (OMIM: 605962) PREDICTED: rab9 effect ( 300)  247 65.9 1.4e-10
XP_016869668 (OMIM: 605962) PREDICTED: rab9 effect ( 305)  247 65.9 1.5e-10
NP_005824 (OMIM: 605962) rab9 effector protein wit ( 372)  247 66.0 1.7e-10
XP_016869666 (OMIM: 605962) PREDICTED: rab9 effect ( 372)  247 66.0 1.7e-10
NP_001167623 (OMIM: 605962) rab9 effector protein  ( 372)  247 66.0 1.7e-10
XP_005251697 (OMIM: 605962) PREDICTED: rab9 effect ( 380)  247 66.0 1.7e-10
NP_751943 (OMIM: 611281) kelch domain-containing p ( 406)  233 62.7 1.7e-09
XP_011534724 (OMIM: 611281) PREDICTED: kelch domai ( 354)  232 62.5 1.8e-09
NP_001193976 (OMIM: 603130) attractin isoform 4 [H (1156)  216 59.2 5.7e-08
NP_647538 (OMIM: 603130) attractin isoform 2 prepr (1272)  216 59.2 6.2e-08
NP_001310261 (OMIM: 603130) attractin isoform 5 pr (1289)  216 59.2 6.2e-08
NP_647537 (OMIM: 603130) attractin isoform 1 prepr (1429)  216 59.3 6.7e-08
XP_016884960 (OMIM: 300019,309541) PREDICTED: host (2013)  211 58.2 1.9e-07
NP_005325 (OMIM: 300019,309541) host cell factor 1 (2035)  211 58.2   2e-07
XP_011529450 (OMIM: 300019,309541) PREDICTED: host (2038)  211 58.2   2e-07
XP_011529449 (OMIM: 300019,309541) PREDICTED: host (2039)  211 58.2   2e-07
XP_006724879 (OMIM: 300019,309541) PREDICTED: host (2079)  211 58.2   2e-07
XP_006724878 (OMIM: 300019,309541) PREDICTED: host (2080)  211 58.2   2e-07
NP_001003760 (OMIM: 610749) kelch-like protein 31  ( 634)  179 50.4 1.4e-05
XP_016866347 (OMIM: 610749) PREDICTED: kelch-like  ( 634)  179 50.4 1.4e-05
XP_005249164 (OMIM: 610749) PREDICTED: kelch-like  ( 634)  179 50.4 1.4e-05
XP_016874731 (OMIM: 607926) PREDICTED: host cell f ( 636)  170 48.3 5.9e-05
XP_016874730 (OMIM: 607926) PREDICTED: host cell f ( 736)  170 48.4 6.6e-05
NP_037452 (OMIM: 607926) host cell factor 2 [Homo  ( 792)  170 48.4 6.9e-05
XP_006710761 (OMIM: 609109) PREDICTED: F-box only  ( 717)  168 47.9 8.9e-05
NP_061867 (OMIM: 609109) F-box only protein 42 [Ho ( 717)  168 47.9 8.9e-05
XP_016856991 (OMIM: 609109) PREDICTED: F-box only  ( 486)  165 47.1 0.00011
XP_016856992 (OMIM: 609109) PREDICTED: F-box only  ( 486)  165 47.1 0.00011
XP_006713079 (OMIM: 246000,613169) PREDICTED: kelc ( 364)  160 45.8 0.00019
XP_005264997 (OMIM: 246000,613169) PREDICTED: kelc ( 227)  154 44.2 0.00035
XP_006713078 (OMIM: 246000,613169) PREDICTED: kelc ( 371)  153 44.2  0.0006
XP_016869670 (OMIM: 605962) PREDICTED: rab9 effect ( 267)  140 41.1  0.0038
XP_016869669 (OMIM: 605962) PREDICTED: rab9 effect ( 267)  140 41.1  0.0038
XP_016869671 (OMIM: 605962) PREDICTED: rab9 effect ( 267)  140 41.1  0.0038
XP_005251701 (OMIM: 605962) PREDICTED: rab9 effect ( 275)  140 41.1  0.0039
NP_067646 (OMIM: 614522) kelch-like protein 12 iso ( 568)  143 42.0  0.0041
XP_016869667 (OMIM: 605962) PREDICTED: rab9 effect ( 318)  140 41.1  0.0043
NP_001289980 (OMIM: 614522) kelch-like protein 12  ( 606)  143 42.1  0.0043
XP_005251699 (OMIM: 605962) PREDICTED: rab9 effect ( 326)  140 41.1  0.0044
NP_001161775 (OMIM: 300655) kelch-like protein 13  ( 613)  141 41.6   0.006
NP_001161773 (OMIM: 300655) kelch-like protein 13  ( 639)  141 41.6  0.0062
XP_016885439 (OMIM: 300655) PREDICTED: kelch-like  ( 639)  141 41.6  0.0062
NP_001161774 (OMIM: 300655) kelch-like protein 13  ( 639)  141 41.6  0.0062
NP_001161772 (OMIM: 300655) kelch-like protein 13  ( 649)  141 41.6  0.0063
XP_011529713 (OMIM: 300655) PREDICTED: kelch-like  ( 655)  141 41.6  0.0063


>>NP_476502 (OMIM: 611248) kelch domain-containing prote  (382 aa)
 initn: 2731 init1: 2731 opt: 2731  Z-score: 3418.1  bits: 641.2 E(85289): 1.2e-183
Smith-Waterman score: 2731; 100.0% identity (100.0% similar) in 382 aa overlap (1-382:1-382)

               10        20        30        40        50        60
pF1KB5 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 PVKSAIRGQAPVVPYMRYGHSTVLIDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 PVKSAIRGQAPVVPYMRYGHSTVLIDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SGTVPGARDGHSACVLGKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 SGTVPGARDGHSACVLGKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 DKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 DKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDI
              310       320       330       340       350       360

              370       380  
pF1KB5 RWELNAMTTNSNISRPIVSSHG
       ::::::::::::::::::::::
NP_476 RWELNAMTTNSNISRPIVSSHG
              370       380  

>>NP_006758 (OMIM: 600574,615670,616564) leucine-zipper-  (840 aa)
 initn: 281 init1: 128 opt: 280  Z-score: 346.0  bits: 73.9 E(85289): 1.6e-12
Smith-Waterman score: 301; 29.5% identity (55.6% similar) in 241 aa overlap (113-336:52-278)

             90       100       110        120       130       140 
pF1KB5 VLIDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFT-PRVSGTVPGARDGHSACVLGKIMY
                                     :.:   :  .  : . :. :.. .    .:
NP_006 SKVAPSVDFDHSCSDSVEYLTLNFGPFETVHRWRRLPPCDEFVGARRSKHTVVAYKDAIY
              30        40        50        60        70        80 

             150       160       170       180       190       200 
pF1KB5 IFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWRDFHSATMLGSHMYVFGGRADR
       .:::  ...  . ::. ..:..  .:    : :.:   :  :::.. :: :.:::: .  
NP_006 VFGG--DNGKTMLNDLLRFDVKDCSWCRAFTTGTPPAPRYHHSAVVYGSSMFVFGGYT--
                90       100       110       120       130         

             210       220         230       240       250         
pF1KB5 FGPFHSNNEIYCNRIRVFDTR--TEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGY--
        : ..::...  :.  .:. .  :  : .      :: .: .:.:  :. .:.::.::  
NP_006 -GDIYSNSNLK-NKNDLFEYKFATGQWTEWKIEGRLPVARSAHGATVYSDKLWIFAGYDG
        140        150       160       170       180       190     

       260       270          280       290           300       310
pF1KB5 NARLNRHFHDLWK--FNPVSFT-WKKIEPKGKGPCPRRRQCC----CIVGDKIVLFGGTS
       :::::    :.:   ..   .: :...  .:. : :   .::     .  ::. .:.: :
NP_006 NARLN----DMWTIGLQDRELTCWEEVAQSGEIP-P---SCCNFPVAVCRDKMFVFSGQS
         200           210       220           230       240       

              320            330       340       350       360     
pF1KB5 PSPEEGLGDEFDLIDHS-----DLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELN
        .   .   .:.. :..       :.:  ::                             
NP_006 GAKITNNLFQFEFKDKTWTRIPTEHLLRGSPPPPQRRYGHTMVAFDRHLYVFGGAADNTL
       250       260       270       280       290       300       

         370       380                                             
pF1KB5 AMTTNSNISRPIVSSHG                                           
                                                                   
NP_006 PNELHCYDVDFQTWEVVQPSSDSEVGGAEVPERACASEEVPTLTYEERVGFKKSRDVFGL
       310       320       330       340       350       360       

>--
 initn: 132 init1:  78 opt: 173  Z-score: 212.1  bits: 49.1 E(85289): 4.5e-05
Smith-Waterman score: 173; 30.3% identity (55.3% similar) in 132 aa overlap (74-200:281-408)

            50        60        70        80        90       100   
pF1KB5 IDVHIFNAVSLRWTKLPPVKSAIRGQAPVVPYMRYGHSTVLIDDTVLLWGGRNDTEGACN
                                     :  ::::. : .:  . ..::  :.    :
NP_006 ITNNLFQFEFKDKTWTRIPTEHLLRGSPPPPQRRYGHTMVAFDRHLYVFGGAADNTLP-N
              260       270       280       290       300          

           110         120       130       140       150           
pF1KB5 VLYAFDVNTHKW--FTPRVSGTVPGARDGHSACVLGKIMYIFGGYEQQADCF--SNDIHK
        :. .::. . :    :  .. : ::.  . ::.  ..  .   ::...  :  : :.  
NP_006 ELHCYDVDFQTWEVVQPSSDSEVGGAEVPERACASEEVPTL--TYEERVG-FKKSRDVFG
     310       320       330       340       350          360      

     160       170        180       190       200       210        
pF1KB5 LDTSTMTWTLICTKGSP-ARWRDFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRV
       :: .: .       .:     : ::.:..... ::.::: .:                  
NP_006 LDFGTTSAKQPTQPASELPSGRLFHAAAVISDAMYIFGGTVDNNIRSGEMYRFQFSCYPK
        370       380       390       400       410       420      

      220       230       240       250       260       270        
pF1KB5 FDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTW
                                                                   
NP_006 CTLHEDYGRLWESRQFCDVEFVLGEKEECVQGHVAIVTARSRWLRRKITQARERLAQKLE
        430       440       450       460       470       480      

>>XP_016869672 (OMIM: 605962) PREDICTED: rab9 effector p  (241 aa)
 initn: 176 init1: 112 opt: 256  Z-score: 323.3  bits: 67.9 E(85289): 2.9e-11
Smith-Waterman score: 311; 30.7% identity (55.2% similar) in 212 aa overlap (115-312:18-213)

           90       100       110       120       130              
pF1KB5 IDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRVSGTVPGARDGHSACVL--------
                                     :.:  : :  : :: :::   :        
XP_016              MKQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKR
                            10        20        30        40       

        140       150       160       170       180        190     
pF1KB5 GKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWRDFH-SATMLGSHMYVF
       ::. .: :: . . . :: :.: .:  : :::   . . :   : :: :.. .:...:::
XP_016 GKV-FIVGGANPNRS-FS-DVHTMDLETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVF
        50         60          70        80        90       100    

         200       210       220            230       240       250
pF1KB5 GGRADRFGPFHSNNEIYCNRIRVFDTRTEAW-----LDCPPTPVLPEGRRSHSAFGYNGE
       :: ..:     . . .  ....:::. : .:     :  ::.:     :..:   . . .
XP_016 GG-GER-----GAQPVQDTKLHVFDANTLTWSQPETLGNPPSP-----RHGHVMVAAGTK
                110       120       130       140            150   

              260       270       280       290       300       310
pF1KB5 LYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTS
       :.: ::  .  .: . ::  ..  .. :.:..: : .:     .    .: .. .::: .
XP_016 LFIHGGLAG--DRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMT
           160         170       180       190       200       210 

              320       330       340       350       360       370
pF1KB5 PSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELNAMTTN
       :.                                                          
XP_016 PAGALDTMYQYHTETGFHRVSQDGLHLLTS                              
             220       230       240                               

>>NP_001167624 (OMIM: 605962) rab9 effector protein with  (321 aa)
 initn: 203 init1: 112 opt: 256  Z-score: 321.6  bits: 68.0 E(85289): 3.6e-11
Smith-Waterman score: 311; 30.7% identity (55.2% similar) in 212 aa overlap (115-312:18-213)

           90       100       110       120       130              
pF1KB5 IDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRVSGTVPGARDGHSACVL--------
                                     :.:  : :  : :: :::   :        
NP_001              MKQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKR
                            10        20        30        40       

        140       150       160       170       180        190     
pF1KB5 GKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWRDFH-SATMLGSHMYVF
       ::. .: :: . . . :: :.: .:  : :::   . . :   : :: :.. .:...:::
NP_001 GKV-FIVGGANPNRS-FS-DVHTMDLETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVF
        50         60          70        80        90       100    

         200       210       220            230       240       250
pF1KB5 GGRADRFGPFHSNNEIYCNRIRVFDTRTEAW-----LDCPPTPVLPEGRRSHSAFGYNGE
       :: ..:     . . .  ....:::. : .:     :  ::.:     :..:   . . .
NP_001 GG-GER-----GAQPVQDTKLHVFDANTLTWSQPETLGNPPSP-----RHGHVMVAAGTK
                110       120       130       140            150   

              260       270       280       290       300       310
pF1KB5 LYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTS
       :.: ::  .  .: . ::  ..  .. :.:..: : .:     .    .: .. .::: .
NP_001 LFIHGGLAG--DRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMT
           160         170       180       190       200       210 

              320       330       340       350       360       370
pF1KB5 PSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELNAMTTN
       :.                                                          
NP_001 PAGALDTMYQYHTEEQHWTLLKFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHE
             220       230       240       250       260       270 

>>XP_005251698 (OMIM: 605962) PREDICTED: rab9 effector p  (329 aa)
 initn: 203 init1: 112 opt: 256  Z-score: 321.5  bits: 68.0 E(85289): 3.6e-11
Smith-Waterman score: 311; 30.7% identity (55.2% similar) in 212 aa overlap (115-312:26-221)

           90       100       110       120       130              
pF1KB5 IDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRVSGTVPGARDGHSACVL--------
                                     :.:  : :  : :: :::   :        
XP_005      MQEIVEDTMKQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKR
                    10        20        30        40        50     

        140       150       160       170       180        190     
pF1KB5 GKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWRDFH-SATMLGSHMYVF
       ::. .: :: . . . :: :.: .:  : :::   . . :   : :: :.. .:...:::
XP_005 GKV-FIVGGANPNRS-FS-DVHTMDLETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVF
           60         70         80        90       100       110  

         200       210       220            230       240       250
pF1KB5 GGRADRFGPFHSNNEIYCNRIRVFDTRTEAW-----LDCPPTPVLPEGRRSHSAFGYNGE
       :: ..:     . . .  ....:::. : .:     :  ::.:     :..:   . . .
XP_005 GG-GER-----GAQPVQDTKLHVFDANTLTWSQPETLGNPPSP-----RHGHVMVAAGTK
                  120       130       140            150       160 

              260       270       280       290       300       310
pF1KB5 LYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTS
       :.: ::  .  .: . ::  ..  .. :.:..: : .:     .    .: .. .::: .
XP_005 LFIHGGLAG--DRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMT
             170         180       190       200       210         

              320       330       340       350       360       370
pF1KB5 PSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELNAMTTN
       :.                                                          
XP_005 PAGALDTMYQYHTEEQHWTLLKFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHE
     220       230       240       250       260       270         

>>XP_011516422 (OMIM: 605962) PREDICTED: rab9 effector p  (300 aa)
 initn: 215 init1: 112 opt: 247  Z-score: 310.7  bits: 65.9 E(85289): 1.4e-10
Smith-Waterman score: 313; 29.4% identity (55.9% similar) in 238 aa overlap (25-256:57-268)

                     10        20        30        40        50    
pF1KB5       MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSL
                                     .:.  ::   ....      ::: ..  . 
XP_011 YTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFS-----DVHTMDLGKH
         30        40        50        60        70             80 

           60        70        80           90       100       110 
pF1KB5 RWTKLPPVKSAIRGQAPVVPYMRYGHSTVL---IDDTVLLWGGRNDTEGACNVLYAFDVN
       .:  :   :    :  :     :: :.. .     : . ..:: :.. :  : : ... .
XP_011 QWD-LDTCK----GLLP-----RYEHASFIPSCTPDRIWVFGGANQS-GNRNCLQVLNPE
                   90            100       110        120       130

             120       130        140       150        160         
pF1KB5 THKWFTPRVSGTVPGARDGH-SACVLGKIMYIFGGYEQQADCFSND-IHKLDTSTMTWTL
       :. : ::.:..  :. :  : :. ..:. .:.::: :. :.  ..  .: .:..:.::. 
XP_011 TRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWSQ
              140       150       160       170       180       190

     170       180       190        200       210       220        
pF1KB5 ICTKGSPARWRDFHSATMLGSHMYVFGGRA-DRFGPFHSNNEIYCNRIRVFDTRTEAWLD
         : :.:   :  :  .  :..... :: : :::      ....:  : . : .   :  
XP_011 PETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRF-----YDDLHC--IDISDMK---WQK
              200       210       220            230            240

      230       240       250       260       270       280        
pF1KB5 CPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGP
         :: . : :  .::: ... ..:::::                                
XP_011 LNPTGAAPAGCAAHSAVAMGKHVYIFGGMTPAGALDTMYQYHTETGFHRVSQDGLHLLTS
              250       260       270       280       290       300

>>XP_016869668 (OMIM: 605962) PREDICTED: rab9 effector p  (305 aa)
 initn: 203 init1: 112 opt: 247  Z-score: 310.6  bits: 65.9 E(85289): 1.5e-10
Smith-Waterman score: 314; 27.9% identity (56.3% similar) in 229 aa overlap (77-299:19-234)

         50        60        70        80           90       100   
pF1KB5 HIFNAVSLRWTKLPPVKSAIRGQAPVVPYMRYGHSTVL---IDDTVLLWGGRNDTEGACN
                                     :: :.. .     : . ..:: :.. :  :
XP_016             MDLGKHQWDLDTCKGLLPRYEHASFIPSCTPDRIWVFGGANQS-GNRN
                           10        20        30        40        

           110       120       130        140       150        160 
pF1KB5 VLYAFDVNTHKWFTPRVSGTVPGARDGH-SACVLGKIMYIFGGYEQQADCFSND-IHKLD
        : ... .:. : ::.:..  :. :  : :. ..:. .:.::: :. :.  ..  .: .:
XP_016 CLQVLNPETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFD
        50        60        70        80        90       100       

             170       180       190        200       210       220
pF1KB5 TSTMTWTLICTKGSPARWRDFHSATMLGSHMYVFGGRA-DRFGPFHSNNEIYCNRIRVFD
       ..:.::.   : :.:   :  :  .  :..... :: : :::      ....:  : . :
XP_016 ANTLTWSQPETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRF-----YDDLHC--IDISD
       110       120       130       140            150         160

              230       240       250       260       270       280
pF1KB5 TRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKK
        .   :    :: . : :  .::: ... ..:::::..      .  .....     :  
XP_016 MK---WQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMTP--AGALDTMYQYHTEEQHWTL
                 170       180       190         200       210     

              290       300       310       320       330       340
pF1KB5 IEPKGKGPCPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKT
       ..     :  :  .  ::.                                         
XP_016 LKFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMSHSGDSHEE
         220       230       240       250       260       270     

>>NP_005824 (OMIM: 605962) rab9 effector protein with ke  (372 aa)
 initn: 242 init1: 112 opt: 247  Z-score: 309.5  bits: 66.0 E(85289): 1.7e-10
Smith-Waterman score: 318; 26.0% identity (53.7% similar) in 281 aa overlap (25-299:49-301)

                     10        20        30        40        50    
pF1KB5       MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSL
                                     .:.  ::   ....      ::: ..  . 
NP_005 YTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFS-----DVHTMDLGKH
       20        30        40        50        60             70   

           60        70        80           90       100       110 
pF1KB5 RWTKLPPVKSAIRGQAPVVPYMRYGHSTVL---IDDTVLLWGGRNDTEGACNVLYAFDVN
       .:       .. .:  :     :: :.. .     : . ..:: :.. :  : : ... .
NP_005 QWDL-----DTCKGLLP-----RYEHASFIPSCTPDRIWVFGGANQS-GNRNCLQVLNPE
                 80             90       100       110        120  

             120       130        140       150        160         
pF1KB5 THKWFTPRVSGTVPGARDGH-SACVLGKIMYIFGGYEQQADCFSND-IHKLDTSTMTWTL
       :. : ::.:..  :. :  : :. ..:. .:.::: :. :.  ..  .: .:..:.::. 
NP_005 TRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWSQ
            130       140       150       160       170       180  

     170       180       190        200       210       220        
pF1KB5 ICTKGSPARWRDFHSATMLGSHMYVFGGRA-DRFGPFHSNNEIYCNRIRVFDTRTEAWLD
         : :.:   :  :  .  :..... :: : :::      ....:  : . : .   :  
NP_005 PETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRF-----YDDLHC--IDISDMK---WQK
            190       200       210            220            230  

      230       240       250       260       270       280        
pF1KB5 CPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGP
         :: . : :  .::: ... ..:::::..      .  .....     :  ..     :
NP_005 LNPTGAAPAGCAAHSAVAMGKHVYIFGGMTP--AGALDTMYQYHTEEQHWTLLKFDTLLP
            240       250       260         270       280       290

      290       300       310       320       330       340        
pF1KB5 CPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQ
         :  .  ::.                                                 
NP_005 PGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMSHSGDSHEESQTATLLC
              300       310       320       330       340       350

>>XP_016869666 (OMIM: 605962) PREDICTED: rab9 effector p  (372 aa)
 initn: 242 init1: 112 opt: 247  Z-score: 309.5  bits: 66.0 E(85289): 1.7e-10
Smith-Waterman score: 318; 26.0% identity (53.7% similar) in 281 aa overlap (25-299:49-301)

                     10        20        30        40        50    
pF1KB5       MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSL
                                     .:.  ::   ....      ::: ..  . 
XP_016 YTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFS-----DVHTMDLGKH
       20        30        40        50        60             70   

           60        70        80           90       100       110 
pF1KB5 RWTKLPPVKSAIRGQAPVVPYMRYGHSTVL---IDDTVLLWGGRNDTEGACNVLYAFDVN
       .:       .. .:  :     :: :.. .     : . ..:: :.. :  : : ... .
XP_016 QWDL-----DTCKGLLP-----RYEHASFIPSCTPDRIWVFGGANQS-GNRNCLQVLNPE
                 80             90       100       110        120  

             120       130        140       150        160         
pF1KB5 THKWFTPRVSGTVPGARDGH-SACVLGKIMYIFGGYEQQADCFSND-IHKLDTSTMTWTL
       :. : ::.:..  :. :  : :. ..:. .:.::: :. :.  ..  .: .:..:.::. 
XP_016 TRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWSQ
            130       140       150       160       170       180  

     170       180       190        200       210       220        
pF1KB5 ICTKGSPARWRDFHSATMLGSHMYVFGGRA-DRFGPFHSNNEIYCNRIRVFDTRTEAWLD
         : :.:   :  :  .  :..... :: : :::      ....:  : . : .   :  
XP_016 PETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRF-----YDDLHC--IDISDMK---WQK
            190       200       210            220            230  

      230       240       250       260       270       280        
pF1KB5 CPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGP
         :: . : :  .::: ... ..:::::..      .  .....     :  ..     :
XP_016 LNPTGAAPAGCAAHSAVAMGKHVYIFGGMTP--AGALDTMYQYHTEEQHWTLLKFDTLLP
            240       250       260         270       280       290

      290       300       310       320       330       340        
pF1KB5 CPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQ
         :  .  ::.                                                 
XP_016 PGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMSHSGDSHEESQTATLLC
              300       310       320       330       340       350

>>NP_001167623 (OMIM: 605962) rab9 effector protein with  (372 aa)
 initn: 242 init1: 112 opt: 247  Z-score: 309.5  bits: 66.0 E(85289): 1.7e-10
Smith-Waterman score: 318; 26.0% identity (53.7% similar) in 281 aa overlap (25-299:49-301)

                     10        20        30        40        50    
pF1KB5       MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSL
                                     .:.  ::   ....      ::: ..  . 
NP_001 YTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFS-----DVHTMDLGKH
       20        30        40        50        60             70   

           60        70        80           90       100       110 
pF1KB5 RWTKLPPVKSAIRGQAPVVPYMRYGHSTVL---IDDTVLLWGGRNDTEGACNVLYAFDVN
       .:       .. .:  :     :: :.. .     : . ..:: :.. :  : : ... .
NP_001 QWDL-----DTCKGLLP-----RYEHASFIPSCTPDRIWVFGGANQS-GNRNCLQVLNPE
                 80             90       100       110        120  

             120       130        140       150        160         
pF1KB5 THKWFTPRVSGTVPGARDGH-SACVLGKIMYIFGGYEQQADCFSND-IHKLDTSTMTWTL
       :. : ::.:..  :. :  : :. ..:. .:.::: :. :.  ..  .: .:..:.::. 
NP_001 TRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWSQ
            130       140       150       160       170       180  

     170       180       190        200       210       220        
pF1KB5 ICTKGSPARWRDFHSATMLGSHMYVFGGRA-DRFGPFHSNNEIYCNRIRVFDTRTEAWLD
         : :.:   :  :  .  :..... :: : :::      ....:  : . : .   :  
NP_001 PETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRF-----YDDLHC--IDISDMK---WQK
            190       200       210            220            230  

      230       240       250       260       270       280        
pF1KB5 CPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGP
         :: . : :  .::: ... ..:::::..      .  .....     :  ..     :
NP_001 LNPTGAAPAGCAAHSAVAMGKHVYIFGGMTP--AGALDTMYQYHTEEQHWTLLKFDTLLP
            240       250       260         270       280       290

      290       300       310       320       330       340        
pF1KB5 CPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQ
         :  .  ::.                                                 
NP_001 PGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMSHSGDSHEESQTATLLC
              300       310       320       330       340       350




382 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:14:11 2016 done: Sat Nov  5 06:14:12 2016
 Total Scan time:  7.520 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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