Result of FASTA (ccds) for pF1KB5004
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5004, 382 aa
  1>>>pF1KB5004 382 - 382 aa - 382 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1229+/-0.000771; mu= 17.1385+/- 0.046
 mean_var=62.4287+/-12.851, 0's: 0 Z-trim(107.9): 56  B-trim: 437 in 1/48
 Lambda= 0.162324
 statistics sampled from 9825 (9881) to 9825 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.304), width:  16
 Scan time:  2.750

The best scores are:                                      opt bits E(32554)
CCDS4880.1 KLHDC3 gene_id:116138|Hs108|chr6        ( 382) 2731 648.1 3.8e-186
CCDS33606.1 LZTR1 gene_id:8216|Hs108|chr22         ( 840)  280 74.3 4.4e-13
CCDS10963.1 KLHDC4 gene_id:54758|Hs108|chr16       ( 520)  259 69.3   9e-12
CCDS55341.1 RABEPK gene_id:10244|Hs108|chr9        ( 321)  256 68.5 9.8e-12
CCDS6862.1 RABEPK gene_id:10244|Hs108|chr9         ( 372)  247 66.4 4.8e-11


>>CCDS4880.1 KLHDC3 gene_id:116138|Hs108|chr6             (382 aa)
 initn: 2731 init1: 2731 opt: 2731  Z-score: 3455.5  bits: 648.1 E(32554): 3.8e-186
Smith-Waterman score: 2731; 100.0% identity (100.0% similar) in 382 aa overlap (1-382:1-382)

               10        20        30        40        50        60
pF1KB5 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 PVKSAIRGQAPVVPYMRYGHSTVLIDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 PVKSAIRGQAPVVPYMRYGHSTVLIDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SGTVPGARDGHSACVLGKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SGTVPGARDGHSACVLGKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 DKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDI
              310       320       330       340       350       360

              370       380  
pF1KB5 RWELNAMTTNSNISRPIVSSHG
       ::::::::::::::::::::::
CCDS48 RWELNAMTTNSNISRPIVSSHG
              370       380  

>>CCDS33606.1 LZTR1 gene_id:8216|Hs108|chr22              (840 aa)
 initn: 281 init1: 128 opt: 280  Z-score: 348.3  bits: 74.3 E(32554): 4.4e-13
Smith-Waterman score: 301; 29.5% identity (55.6% similar) in 241 aa overlap (113-336:52-278)

             90       100       110        120       130       140 
pF1KB5 VLIDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFT-PRVSGTVPGARDGHSACVLGKIMY
                                     :.:   :  .  : . :. :.. .    .:
CCDS33 SKVAPSVDFDHSCSDSVEYLTLNFGPFETVHRWRRLPPCDEFVGARRSKHTVVAYKDAIY
              30        40        50        60        70        80 

             150       160       170       180       190       200 
pF1KB5 IFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWRDFHSATMLGSHMYVFGGRADR
       .:::  ...  . ::. ..:..  .:    : :.:   :  :::.. :: :.:::: .  
CCDS33 VFGG--DNGKTMLNDLLRFDVKDCSWCRAFTTGTPPAPRYHHSAVVYGSSMFVFGGYT--
                90       100       110       120       130         

             210       220         230       240       250         
pF1KB5 FGPFHSNNEIYCNRIRVFDTR--TEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGY--
        : ..::...  :.  .:. .  :  : .      :: .: .:.:  :. .:.::.::  
CCDS33 -GDIYSNSNLK-NKNDLFEYKFATGQWTEWKIEGRLPVARSAHGATVYSDKLWIFAGYDG
        140        150       160       170       180       190     

       260       270          280       290           300       310
pF1KB5 NARLNRHFHDLWK--FNPVSFT-WKKIEPKGKGPCPRRRQCC----CIVGDKIVLFGGTS
       :::::    :.:   ..   .: :...  .:. : :   .::     .  ::. .:.: :
CCDS33 NARLN----DMWTIGLQDRELTCWEEVAQSGEIP-P---SCCNFPVAVCRDKMFVFSGQS
         200           210       220           230       240       

              320            330       340       350       360     
pF1KB5 PSPEEGLGDEFDLIDHS-----DLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELN
        .   .   .:.. :..       :.:  ::                             
CCDS33 GAKITNNLFQFEFKDKTWTRIPTEHLLRGSPPPPQRRYGHTMVAFDRHLYVFGGAADNTL
       250       260       270       280       290       300       

         370       380                                             
pF1KB5 AMTTNSNISRPIVSSHG                                           
                                                                   
CCDS33 PNELHCYDVDFQTWEVVQPSSDSEVGGAEVPERACASEEVPTLTYEERVGFKKSRDVFGL
       310       320       330       340       350       360       

>>CCDS10963.1 KLHDC4 gene_id:54758|Hs108|chr16            (520 aa)
 initn: 169 init1: 112 opt: 259  Z-score: 324.9  bits: 69.3 E(32554): 9e-12
Smith-Waterman score: 259; 28.6% identity (57.6% similar) in 203 aa overlap (140-332:78-271)

     110       120       130       140         150       160       
pF1KB5 VNTHKWFTPRVSGTVPGARDGHSACVLGKIMYIFGG--YEQQADCFSNDIHKLDTSTMTW
                                     . .:::  .. :   . :...  .:   ::
CCDS10 AKRTQTVELPCPPPSPRLNASLSVHPEKDELILFGGEYFNGQKTFLYNELYVYNTRKDTW
        50        60        70        80        90       100       

       170       180          190       200       210       220    
pF1KB5 TLICTKGSPARWRDFHSATML---GSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTE
       : .   . : : :  :.:...   :....::::.   :.  ....  . . . :.   :.
CCDS10 TKVDIPSPPPR-RCAHQAVVVPQGGGQLWVFGGE---FASPNGEQFYHYKDLWVLHLATK
       110        120       130       140          150       160   

          230       240       250         260       270       280  
pF1KB5 AWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYN--ARLNRHFHDLWKFNPVSFTWKKIE
       .: .   :   : :: .:   ... .: .:::..  .:   ...:.. ::  .:::.:. 
CCDS10 TWEQVKSTGG-PSGRSGHRMVAWKRQLILFGGFHESTRDYIYYNDVYAFNLDTFTWSKLS
           170        180       190       200       210       220  

            290       300         310       320        330         
pF1KB5 PKGKGPCPRRRQCCCIVGDK--IVLFGGTSPSPEEGLGDEFDL-IDHSDLHILDFSPSLK
       :.: :: ::   :   :  .  ::..:: :   .. .  . :    :::. .:       
CCDS10 PSGTGPTPRS-GCQMSVTPQGGIVVYGGYS---KQRVKKDVDKGTRHSDMFLLKPEDGRE
            230        240       250          260       270        

     340       350       360       370       380                   
pF1KB5 TLCKLAVIQYNLDQSCLPHDIRWELNAMTTNSNISRPIVSSHG                 
                                                                   
CCDS10 DKWVWTRMNPSGVKPTPRSGFSVAMAPNHQTLFFGGVCDEEEEESLSGEFFNDLYFYDAT
      280       290       300       310       320       330        

>>CCDS55341.1 RABEPK gene_id:10244|Hs108|chr9             (321 aa)
 initn: 203 init1: 112 opt: 256  Z-score: 324.2  bits: 68.5 E(32554): 9.8e-12
Smith-Waterman score: 311; 30.7% identity (55.2% similar) in 212 aa overlap (115-312:18-213)

           90       100       110       120       130              
pF1KB5 IDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRVSGTVPGARDGHSACVL--------
                                     :.:  : :  : :: :::   :        
CCDS55              MKQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKR
                            10        20        30        40       

        140       150       160       170       180        190     
pF1KB5 GKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWRDFH-SATMLGSHMYVF
       ::. .: :: . . . :: :.: .:  : :::   . . :   : :: :.. .:...:::
CCDS55 GKV-FIVGGANPNRS-FS-DVHTMDLETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVF
        50         60          70        80        90       100    

         200       210       220            230       240       250
pF1KB5 GGRADRFGPFHSNNEIYCNRIRVFDTRTEAW-----LDCPPTPVLPEGRRSHSAFGYNGE
       :: ..:     . . .  ....:::. : .:     :  ::.:     :..:   . . .
CCDS55 GG-GER-----GAQPVQDTKLHVFDANTLTWSQPETLGNPPSP-----RHGHVMVAAGTK
                110       120       130       140            150   

              260       270       280       290       300       310
pF1KB5 LYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTS
       :.: ::  .  .: . ::  ..  .. :.:..: : .:     .    .: .. .::: .
CCDS55 LFIHGGLAG--DRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMT
           160         170       180       190       200       210 

              320       330       340       350       360       370
pF1KB5 PSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELNAMTTN
       :.                                                          
CCDS55 PAGALDTMYQYHTEEQHWTLLKFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHE
             220       230       240       250       260       270 

>>CCDS6862.1 RABEPK gene_id:10244|Hs108|chr9              (372 aa)
 initn: 242 init1: 112 opt: 247  Z-score: 311.8  bits: 66.4 E(32554): 4.8e-11
Smith-Waterman score: 318; 26.0% identity (53.7% similar) in 281 aa overlap (25-299:49-301)

                     10        20        30        40        50    
pF1KB5       MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSL
                                     .:.  ::   ....      ::: ..  . 
CCDS68 YTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFS-----DVHTMDLGKH
       20        30        40        50        60             70   

           60        70        80           90       100       110 
pF1KB5 RWTKLPPVKSAIRGQAPVVPYMRYGHSTVL---IDDTVLLWGGRNDTEGACNVLYAFDVN
       .:       .. .:  :     :: :.. .     : . ..:: :.. :  : : ... .
CCDS68 QWDL-----DTCKGLLP-----RYEHASFIPSCTPDRIWVFGGANQS-GNRNCLQVLNPE
                 80             90       100       110        120  

             120       130        140       150        160         
pF1KB5 THKWFTPRVSGTVPGARDGH-SACVLGKIMYIFGGYEQQADCFSND-IHKLDTSTMTWTL
       :. : ::.:..  :. :  : :. ..:. .:.::: :. :.  ..  .: .:..:.::. 
CCDS68 TRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWSQ
            130       140       150       160       170       180  

     170       180       190        200       210       220        
pF1KB5 ICTKGSPARWRDFHSATMLGSHMYVFGGRA-DRFGPFHSNNEIYCNRIRVFDTRTEAWLD
         : :.:   :  :  .  :..... :: : :::      ....:  : . : .   :  
CCDS68 PETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRF-----YDDLHC--IDISDMK---WQK
            190       200       210            220            230  

      230       240       250       260       270       280        
pF1KB5 CPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGP
         :: . : :  .::: ... ..:::::..      .  .....     :  ..     :
CCDS68 LNPTGAAPAGCAAHSAVAMGKHVYIFGGMTP--AGALDTMYQYHTEEQHWTLLKFDTLLP
            240       250       260         270       280       290

      290       300       310       320       330       340        
pF1KB5 CPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQ
         :  .  ::.                                                 
CCDS68 PGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMSHSGDSHEESQTATLLC
              300       310       320       330       340       350




382 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:14:10 2016 done: Sat Nov  5 06:14:10 2016
 Total Scan time:  2.750 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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