Result of FASTA (omim) for pF1KB5000
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5000, 204 aa
  1>>>pF1KB5000 204 - 204 aa - 204 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5834+/-0.000325; mu= 17.7900+/- 0.020
 mean_var=62.1581+/-12.438, 0's: 0 Z-trim(115.7): 12  B-trim: 0 in 0/50
 Lambda= 0.162677
 statistics sampled from 26248 (26259) to 26248 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.308), width:  16
 Scan time:  5.360

The best scores are:                                      opt bits E(85289)
NP_001240309 (OMIM: 604174,615550) 60S ribosomal p ( 204) 1424 342.2 3.5e-94
NP_001240311 (OMIM: 604174,615550) 60S ribosomal p ( 204) 1424 342.2 3.5e-94
NP_001240312 (OMIM: 604174,615550) 60S ribosomal p ( 204) 1424 342.2 3.5e-94
NP_002939 (OMIM: 604174,615550) 60S ribosomal prot ( 204) 1424 342.2 3.5e-94
NP_001240308 (OMIM: 604174,615550) 60S ribosomal p ( 204) 1424 342.2 3.5e-94
NP_001240313 (OMIM: 604174,615550) 60S ribosomal p ( 145)  838 204.5 6.8e-53


>>NP_001240309 (OMIM: 604174,615550) 60S ribosomal prote  (204 aa)
 initn: 1424 init1: 1424 opt: 1424  Z-score: 1811.9  bits: 342.2 E(85289): 3.5e-94
Smith-Waterman score: 1424; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KB5 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
              130       140       150       160       170       180

              190       200    
pF1KB5 HHTIGGSRRAAWRRRNTLQLHRYR
       ::::::::::::::::::::::::
NP_001 HHTIGGSRRAAWRRRNTLQLHRYR
              190       200    

>>NP_001240311 (OMIM: 604174,615550) 60S ribosomal prote  (204 aa)
 initn: 1424 init1: 1424 opt: 1424  Z-score: 1811.9  bits: 342.2 E(85289): 3.5e-94
Smith-Waterman score: 1424; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KB5 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
              130       140       150       160       170       180

              190       200    
pF1KB5 HHTIGGSRRAAWRRRNTLQLHRYR
       ::::::::::::::::::::::::
NP_001 HHTIGGSRRAAWRRRNTLQLHRYR
              190       200    

>>NP_001240312 (OMIM: 604174,615550) 60S ribosomal prote  (204 aa)
 initn: 1424 init1: 1424 opt: 1424  Z-score: 1811.9  bits: 342.2 E(85289): 3.5e-94
Smith-Waterman score: 1424; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KB5 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
              130       140       150       160       170       180

              190       200    
pF1KB5 HHTIGGSRRAAWRRRNTLQLHRYR
       ::::::::::::::::::::::::
NP_001 HHTIGGSRRAAWRRRNTLQLHRYR
              190       200    

>>NP_002939 (OMIM: 604174,615550) 60S ribosomal protein   (204 aa)
 initn: 1424 init1: 1424 opt: 1424  Z-score: 1811.9  bits: 342.2 E(85289): 3.5e-94
Smith-Waterman score: 1424; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KB5 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
              130       140       150       160       170       180

              190       200    
pF1KB5 HHTIGGSRRAAWRRRNTLQLHRYR
       ::::::::::::::::::::::::
NP_002 HHTIGGSRRAAWRRRNTLQLHRYR
              190       200    

>>NP_001240308 (OMIM: 604174,615550) 60S ribosomal prote  (204 aa)
 initn: 1424 init1: 1424 opt: 1424  Z-score: 1811.9  bits: 342.2 E(85289): 3.5e-94
Smith-Waterman score: 1424; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KB5 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
              130       140       150       160       170       180

              190       200    
pF1KB5 HHTIGGSRRAAWRRRNTLQLHRYR
       ::::::::::::::::::::::::
NP_001 HHTIGGSRRAAWRRRNTLQLHRYR
              190       200    

>>NP_001240313 (OMIM: 604174,615550) 60S ribosomal prote  (145 aa)
 initn: 838 init1: 838 opt: 838  Z-score: 1070.6  bits: 204.5 E(85289): 6.8e-53
Smith-Waterman score: 838; 99.2% identity (100.0% similar) in 121 aa overlap (1-121:1-121)

               10        20        30        40        50        60
pF1KB5 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
       .                                                           
NP_001 MESHSHSGGSAVGQSRLTATSVSRV                                   
              130       140                                        




204 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:13:30 2016 done: Sat Nov  5 06:13:31 2016
 Total Scan time:  5.360 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com