GENSCAN 1.0	Date run:  5-Nov-116	Time: 06:11:11

Sequence gi568815584r:100234878_100469185 : 234308 bp : 49.09% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   3552   3831  280  1  1  112   -4   181 0.823   7.84
 1.02 Intr +   4322   5046  725  2  2   87   99  1694 0.994 161.48
 1.03 Intr +   5689   5853  165  2  0   82   24   138 0.026   6.73
 1.04 Intr +  27427  27589  163  2  1   50   97   154 0.946  11.53
 1.05 Intr +  38936  39002   67  2  1   56   96    23 0.322  -1.19
 1.06 Intr +  41613  41771  159  2  0   90   80   131 0.971  12.68
 1.07 Term +  42541  42723  183  0  0   80   48   174 0.999  10.14
 1.08 PlyA +  42782  42787    6                               1.05

 2.07 PlyA -  43714  43709    6                               1.05
 2.06 Term -  58155  57406  750  0  0  136   48  1461 0.999 140.35
 2.05 Intr -  58500  58417   84  0  0  126   75   137 0.998  16.22
 2.04 Intr -  64008  63965   44  1  2  111  113    42 0.250   6.96
 2.03 Intr -  72871  72832   40  1  1   74   92     9 0.025  -2.30
 2.02 Intr -  73387  73283  105  1  0   43  115    20 0.086   0.61
 2.01 Init -  78353  78111  243  2  0   89   70   139 0.172  10.02
 2.00 Prom -  86329  86290   40                              -8.56

 3.00 Prom +  87115  87154   40                              -0.26
 3.01 Init +  88953  88999   47  2  2   89  103    77 0.808   7.47
 3.02 Intr +  90374  90399   26  2  2   88   58    26 0.892  -2.73
 3.03 Intr +  90911  90954   44  0  2  138   86    95 0.992  12.26
 3.04 Intr +  91280  91351   72  1  0   94   46    62 0.820   2.20
 3.05 Intr +  92311  92493  183  0  0   78   77   350 0.999  32.88
 3.06 Intr +  93849  94167  319  2  1  125   99   353 0.999  35.63
 3.07 Term +  94488  94768  281  1  2   71   42   182 0.960   7.51
 3.08 PlyA +  95477  95482    6                               1.05

 4.11 PlyA -  98933  98928    6                               1.05
 4.10 Term - 100159  99998  162  1  0  103   42   279 0.999  22.74
 4.09 Intr - 102325 102185  141  1  0   84  105   255 0.998  27.35
 4.08 Intr - 107694 107521  174  0  0  110  105   197 0.999  23.74
 4.07 Intr - 108510 108398  113  1  2   97   76    92 0.995   9.00
 4.06 Intr - 111969 111869  101  2  2  117   91   144 0.963  17.35
 4.05 Intr - 118992 118810  183  2  0  111   74   368 0.987  36.60
 4.04 Intr - 119689 119570  120  0  0  112  106    62 0.996  10.01
 4.03 Intr - 125785 125677  109  2  1   80   71    64 0.998   3.24
 4.02 Intr - 127044 126831  214  0  1  101   84   171 0.871  16.29
 4.01 Init - 134308 134210   99  1  0  102   83   110 0.755  12.16
 4.00 Prom - 134481 134442   40                             -11.72

 5.00 Prom + 134733 134772   40                              -0.76
 5.01 Init + 140179 140287  109  0  1   92   22    90 0.027   3.19
 5.02 Intr + 146088 146869  782  1  2   22  116   277 0.628  15.10
 5.03 Intr + 147082 147132   51  0  0   89   78    18 0.472   0.00
 5.04 Term + 154950 155090  141  2  0   79   53   164 0.981   9.93
 5.05 PlyA + 157245 157250    6                               1.05

 6.04 PlyA - 159238 159233    6                               1.05
 6.03 Term - 159554 159378  177  2  0  102   44    98 0.287   4.49
 6.02 Intr - 193594 193544   51  1  0   81  105    16 0.134   1.70
 6.01 Init - 195868 195722  147  1  0   93  102    22 0.291   2.47
 6.00 Prom - 207054 207015   40                              -3.06

 7.00 Prom + 208443 208482   40                              -4.86
 7.01 Init + 218645 218745  101  1  2   29   50   137 0.408   3.73
 7.02 Intr + 231746 231818   73  2  1   78   75    53 0.353   2.41
 7.03 Intr + 233144 233291  148  1  1  120   96   193 0.757  23.11

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +   5689   5861  173  2  2   82   40   147 0.973   7.29
S.002 Init +  24919  24940   22  0  1   55  116    25 0.879   1.85


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815584r:100234878_100469185|GENSCAN_predicted_peptide_1|580_aa
XSRPRGARGRADRSPAPKAAAVAATPRSRVRPRPEAAGFVAVAPRRAAAARHREAGGGGG
GGGALTSRAAGQPGRVRAAPPPVPSAPIREEPGDRGAEAAAAVAAEPSAMASGDTLYIAT
DGSEMPAEIVELHEIEVETIPVETIETTVVGEEEEEDDDDEDGGGGDHGGGGGHGHAGHH
HHHHHHHHHPPMIALQPLVTDDPTQVHHHQEVILVQTREEVVGGDDSDGLRAEDGFEDQI
LIPVPAPAGGDDDYIEQTLVTVAAAGKSGGGGSSSSGGGRVKKGGGKKSGKKSYLSGGAG
AAGGGGADPGNKKWEQKQVQIKTLEGEFSVTMWSSAPGWTLPRRSRSPKSSFAAGRDLGL
HVGLACAGSERQSEPVTAVASEFLAFSPSCDEKKDIDHETVVEEQIIGENSPPDYSEYMT
GKKLPPGGIPGIDLSDPKQLAEFARSIGNIWRESFDKSPKLDSVEKQGCTKMFRDNSAMR
KHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV
RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ

>gi568815584r:100234878_100469185|GENSCAN_predicted_CDS_1|1743_bp
ngctcccgcccccgtggtgcccggggccgcgcggaccgctcaccggctcccaaggcagcg
gctgtagcggcgacgccccgttcccgagtgcggccccggcccgaggcggcgggttttgtg
gctgttgcaccgcgaagggcggcagccgcgcgacaccgggaagcgggaggcggtggcggc
ggcggcggcgcgctgacgtcacgcgccgcgggccagccagggcgcgtgcgagccgccccg
cccccggtcccatcggccccaatccgggaggagcccggcgaccgaggagccgaggccgcc
gcggccgtggcggcggagccctcagccatggcctcgggcgacaccctctacatcgccacg
gacggctcggagatgccggccgagatcgtggagctgcacgagatcgaggtggagaccatc
ccggtggagaccatcgagaccacagtggtgggcgaggaggaggaggaggacgacgacgac
gaggacggcggcggtggcgaccacggcggcgggggcggccacgggcacgccggccaccac
caccaccaccatcaccaccaccaccacccgcccatgatcgctctgcagccgctggtcacc
gacgacccgacccaggtgcaccaccaccaggaggtgatcctggtgcagacgcgcgaggag
gtggtgggcggcgacgactcggacgggctgcgcgccgaggacggcttcgaggatcagatt
ctcatcccggtgcccgcgccggccggcggcgacgacgactacattgaacaaacgctggtc
accgtggcggcggccggcaagagcggcggcggcggctcgtcgtcgtcgggaggcggccgc
gtcaagaagggcggcggcaagaagagcggcaagaagagttacctcagcggcggggccggc
gcggcgggcggcggcggcgccgacccgggcaacaagaagtgggagcagaagcaggtgcag
atcaagaccctggagggcgagttctcggtcaccatgtggtcctcagcgccgggctggacc
ctgccccggcggtcacgctcgcccaagtcgtcgtttgctgcggggcgggacttggggctg
cacgtagggctcgcgtgtgcgggctccgagcgtcagtcggagcctgtcaccgccgttgcc
agcgaattcctggccttttcgccttcctgcgatgaaaaaaaagatattgaccatgagaca
gtggttgaagaacagatcattggagagaactcacctcctgattattcagaatatatgaca
ggaaagaaacttcctcctggaggaatacctggcattgacctctcagatcccaaacaactg
gcagaatttgctagatctatagggaatatttggagagaaagttttgacaaaagtccaaag
cttgattcagtggagaagcagggctgcacaaagatgttcagggataactcggccatgaga
aaacatctgcacacccacggtcccagagtccacgtctgtgcagaatgtggcaaagctttt
gttgagagttcaaaactaaaacgacaccaactggttcatactggagagaagccctttcag
tgcacgttcgaaggctgtgggaaacgcttttcactggacttcaatttgcgcacacatgtg
cgaatccataccggagacaggccctatgtgtgccccttcgatggttgtaataagaagttt
gctcagtcaactaacctgaaatctcacatcttaacacatgctaaggccaaaaacaaccag
tga

>gi568815584r:100234878_100469185|GENSCAN_predicted_peptide_2|421_aa
MTRQCQASNQQLGPQPLATTPPDLFLGFQQLFGTFASWGREPHCGGPDFPQPIQTVEDAL
RKPSGLQLINYIHTYLPLPAKVLDFPPKPPQPGMDVQGFVLYLMSPPASQGHPVPKYQIH
RTFRPAPPGGVAGVLVGHPFDTVKVRLQVQSVEKPQYRGTLHCFKSIIKQESVLGLYKGL
GSPLMGLTFINALVFGVQGNTLRALGHDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQL
QDAGPARTYKGSLDCLAQIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTYDALTRALGCE
PGDRLLVPKLLLAGGTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAE
GWRVFTRGLASTLLRAFPVNAATFATVTVVLTYARGEEAGPEGEAVPAAPAGPALAQPSS
L

>gi568815584r:100234878_100469185|GENSCAN_predicted_CDS_2|1266_bp
atgactcgccagtgccaggcctcaaaccaacagctcgggccccagcccctggccacaacg
ccacctgacctgttcctgggttttcagcagctgtttgggacctttgctagctggggccgg
gagccccactgcgggggccccgatttcccccaacccatccagaccgttgaagatgccctt
aggaagccttcaggacttcagctgattaattacattcacacttatcttccacttcctgca
aaggtactggatttccctcccaaacctcctcaaccaggaatggatgtgcagggatttgtg
ctttacctcatgagccctccagcatcccaaggacatcctgttcctaagtaccaaatacac
agaacctttcgacctgcacctccaggaggtgtggcaggcgtgcttgtgggacacccgttt
gacacggtcaaggtacggcttcaggtccagagcgtggagaagcctcagtaccgcgggacg
ttgcactgcttcaagtccatcatcaagcaagagagcgtgctgggcctgtacaagggcctg
ggctcgccgctcatggggctcaccttcatcaacgcgctggtgttcggggtgcagggcaac
accctccgggccctgggccacgactcgcccctcaaccagttcctggcaggtgcggcggcg
ggcgccatccagtgcgtcatctgctgccccatggagctggccaagacgcggctgcagctg
caggacgcgggcccagcgcgcacctacaagggctcgctggactgcctcgcgcagatctac
gggcacgagggtctgcgtggcgtcaaccggggcatggtgtccacgttgctgcgtgagacg
cccagcttcggcgtctacttcctcacctatgacgctctcacgcgggcgctgggctgcgag
ccgggcgaccgcctgctggtgcccaagctgctgttggcgggcggtacgtcaggcatcgtg
tcctggctctctacctatcctgtggacgtggtcaagtcgcggctgcaggcggacggactg
cggggcgccccgcgctaccgcggcatcctggactgcgtgcaccagagctaccgcgccgag
ggctggcgcgtcttcacacgggggctggcgtccacgctgctgcgcgccttccccgtcaac
gctgccaccttcgccaccgtcacggtggtgctcacctacgcgcgcggcgaggaggccggg
cccgagggcgaggctgtgcccgccgcccctgcggggcctgccctggcgcagccctccagc
ctgtga

>gi568815584r:100234878_100469185|GENSCAN_predicted_peptide_3|323_aa
MGLVLQQGLEGAGRGRQSWLFTNPGVCGVAVGYPLDTVKVRIQTEPKYTGIWHCVRDTYH
RERVWGFYRGLSLPVCTVSLVSSVSFGTYRHCLAHICRLRYGNPDAKPTKADITLSGCAS
GLVRVFLTSPTEVAKVRLQTQTQAQKQQRRLSASGPLAVPPMCPVPPACPEPKYRGPLHC
LATVAREEGLCGLYKGSSALVLRDGHSFATYFLSYAVLCEWLSPAGHSRPDVPGVLVAGG
CAGVLAWAVATPMDVIKSRLQADGQGQRRYRGLLHCMVTSVREEGPRVLFKGLVLNCCRA
FPVNMVVFVAYEAVLRLARGLLT

>gi568815584r:100234878_100469185|GENSCAN_predicted_CDS_3|972_bp
atgggcctggtcctgcagcagggactggaaggggcgggcagaggacggcagtcctggctc
ttcacgaaccccggcgtctgcggtgttgctgtgggctaccccctggacacggtgaaggtc
aggatccagacggagccaaagtacacaggcatctggcactgcgtccgggatacgtatcac
cgagagcgcgtgtggggcttctaccggggcctctcgctgcccgtgtgcacggtgtccctg
gtatcttccgtgtcttttggcacctaccgccactgcctggcgcacatctgccggctccgg
tacggcaaccctgacgccaagcccaccaaggccgacatcacgctctcgggatgcgcctcc
ggcctcgtccgcgtgttcctgacgtcgcccactgaggtggccaaagtccgcttgcagacg
cagacacaggcgcagaagcagcagcggcggctttcggcctcggggccgttggctgtgccc
cccatgtgtcctgtgcccccagcctgcccagagcccaagtaccgcgggccactgcactgc
ctggccacggtagcccgtgaggaggggctgtgcggcctctacaagggcagctcggccctg
gtcttacgggacggccactcctttgccacctacttcctttcctacgcggtcctctgcgag
tggctcagccccgctggccacagccggccagatgtcccgggcgtgctggtggccgggggc
tgtgcaggagtcctggcctgggctgtggccacccccatggacgtgatcaagtcgagactg
caggcagacgggcagggccagaggcgctaccggggtctcctgcactgtatggtgaccagc
gttcgagaggagggaccccgggtccttttcaaggggctggtactcaattgctgccgcgcc
ttccctgtcaacatggtggtcttcgtcgcctatgaggcagtgctgaggctcgcccggggt
ctgctcacatag

>gi568815584r:100234878_100469185|GENSCAN_predicted_peptide_4|471_aa
MPNSEPASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDYKA
DCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRI
ERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFT
KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDY
MGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDR
TDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIF
LTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDY
TSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQ

>gi568815584r:100234878_100469185|GENSCAN_predicted_CDS_4|1416_bp
atgcccaacagtgagcccgcatctctgctggagctgttcaacagcatcgccacacaaggg
gagctcgtaaggtccctcaaagcgggaaatgcgtcaaaggatgaaattgattctgcagta
aagatgttggtgtcattaaaaatgagctacaaagctgccgcgggggaggattacaaggct
gactgtcctccagggaacccagcacctaccagtaatcatggcccagatgccacagaagct
gaagaggattttgtggacccatggacagtacagacaagcagtgcaaaaggcatagactac
gataagctcattgttcggtttggaagtagtaaaattgacaaagagctaataaaccgaata
gagagagccaccggccaaagaccacaccacttcctgcgcagaggcatcttcttctcacac
agagatatgaatcaggttcttgatgcctatgaaaataagaagccattttatctgtacacg
ggccggggcccctcttctgaagcaatgcatgtaggtcacctcattccatttattttcaca
aagtggctccaggatgtatttaacgtgcccttggtcatccagatgacggatgacgagaag
tatctgtggaaggacctgaccctggaccaggcctatagctatgctgtggagaatgccaag
gacatcatcgcctgtggctttgacatcaacaagactttcatattctctgacctggactac
atggggatgagctcaggtttctacaaaaatgtggtgaagattcaaaagcatgttaccttc
aaccaagtgaaaggcattttcggcttcactgacagcgactgcattgggaagatcagtttt
cctgccatccaggctgctccctccttcagcaactcattcccacagatcttccgagacagg
acggatatccagtgccttatcccatgtgccattgaccaggatccttactttagaatgaca
agggacgtcgcccccaggatcggctatcctaaaccagccctgctgcactccaccttcttc
ccagccctgcagggcgcccagaccaaaatgagtgccagcgaccccaactcctccatcttc
ctcaccgacacggccaagcagatcaaaaccaaggtcaataagcatgcgttttctggaggg
agagacaccatcgaggagcacaggcagtttgggggcaactgtgatgtggacgtgtctttc
atgtacctgaccttcttcctcgaggacgacgacaagctcgagcagatcaggaaggattac
accagcggagccatgctcaccggtgagctcaagaaggcactcatagaggttctgcagccc
ttgatcgcagagcaccaggcccggcgcaaggaggtcacggatgagatagtgaaagagttc
atgactccccggaagctgtccttcgactttcagtag

>gi568815584r:100234878_100469185|GENSCAN_predicted_peptide_5|360_aa
MTVLRGKLRIQARDCSARISVPYGSSESPELWVNGRTYDDSDSEAETEHAGSFNATGQQK
DTSGVARPPGQDFASGTLDVPKAGAQPTKHGSCEDPGGYRLPLAQLGRSDWGSCPSQRLQ
WPGKEPQVTFPIKEPSCSSLWTSHVPASHMPLAAARFKQVKLSRNFPKSSFHAQSESETV
GKNGSSFQKKKCEDCVVPYTPRRLRQRQALSTETGKGKDVEPQGPPAGRAPAPLYVGPGV
SEFIQPYLNSHYKETTVPRKVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVTR
GYCFLSLSEAVREEDWGTGELGPPIERGPYRDERHPLGLLLLKVVDFATLIAWASWMSLD

>gi568815584r:100234878_100469185|GENSCAN_predicted_CDS_5|1083_bp
atgacggtgctgagaggcaagctacggatccaagcccgcgactgctcagccaggatctct
gttccctatgggagcagtgaatcacctgaactttgggtcaatggaagaacgtatgatgat
tcggactcggaggctgagacagagcatgcaggaagttttaatgctaccggccagcagaaa
gacacttctggtgtggccagaccacctgggcaggattttgcatctggtacactggatgtg
cccaaagcaggggcacagcccacaaagcatggctcctgtgaagacccagggggctatcgc
cttccattggctcagcttgggagaagcgattggggatcttgccccagccagaggctacag
tggcccgggaaggagcctcaagtcaccttccccatcaaagagccttcttgttcttctctg
tggacgagccatgttccagccagccacatgcccctggcagctgcccgctttaagcaagta
aaactctccaggaactttcccaagtcatctttccatgctcaaagtgagtctgaaaccgta
ggtaaaaatggcagctcttttcagaagaaaaaatgtgaggactgtgtggtaccctatact
cccagaagactaagacagcggcaggcattaagcacggagacaggcaagggtaaagacgtg
gagccacaggggccccctgcagggcgtgccccagcccctctctacgtgggcccgggagtg
tctgagtttattcagccatatttgaatagccattataaagaaaccacagttccccggaaa
gtgcttttccacctgagaggccacaggggccctgtcaacaccattcagtggtgtccagtc
ctttctaagagccacatgcttctctccacttctatggataaaactttcaaggttaccaga
ggatactgtttcttatccctctcggaggccgtgagggaggaggattggggcactggggag
ctcggcccccccatagaacgagggccatacagagatgagcggcaccctctggggctgctg
ctgctgaaggtcgttgactttgcaactctgattgcttgggcatcctggatgtccctggat
tga

>gi568815584r:100234878_100469185|GENSCAN_predicted_peptide_6|124_aa
MGFLHLHHPFPTAYRDAASLTGSPITAAGSHCASVSSSANRDHSPAWHKRRTLRPRKAKM
AAHTRLQRQHKARPEEFTGHTAASPEAWLMETSQGPSAEPSPKSTTSTTASHVTLLDWKT
RSHT

>gi568815584r:100234878_100469185|GENSCAN_predicted_CDS_6|375_bp
atgggcttcctgcatctccaccatcccttccccacagcctatcgagatgcagcctccctc
actgggtcacctataacagccgctggttcccactgtgcctcagtgtcctcatctgcaaac
agggaccacagtcctgcctggcataagaggaggacgctgaggcccagaaaggctaaaatg
gctgcccacaccaggctgcagagacagcataaagcaaggcccgaggaattcacaggccac
acagcagcaagtccagaagcctggctcatggagacgtcacaaggcccatcagctgagcca
tcccccaagtccaccacctcaaccactgccagccatgtcacactgctggactggaagaca
agaagccacacctag

>gi568815584r:100234878_100469185|GENSCAN_predicted_peptide_7|108_aa
MIIATWRRSQNNALDYDAFKCPGYEVPDYDAFKREERTEAQRGKATQPRPEACQQPYQVW
NAVDSGHCLQTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETX

>gi568815584r:100234878_100469185|GENSCAN_predicted_CDS_7|324_bp
atgattattgctacctggaggcggtcccagaataatgccctggattatgatgctttcaaa
tgtcccggatatgaagttccagattatgatgctttcaaaagggaggagaggactgaggcc
cagagaggcaaagccactcagccaaggcccgaggcctgccagcagccgtatcaggtatgg
aacgccgtggactccgggcactgcctgcagacctactccctgcacacagaggcagtgcgg
gccgcccggtgggctccctgtggccggcgcatcctcagtggtggctttgacttcgcgctg
cacctaacagaccttgaaacagnn