Result of FASTA (omim) for pF1KB4295
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4295, 237 aa
  1>>>pF1KB4295 237 - 237 aa - 237 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2450+/-0.000444; mu= 16.1580+/- 0.028
 mean_var=100.1928+/-19.832, 0's: 0 Z-trim(113.5): 435  B-trim: 566 in 1/52
 Lambda= 0.128131
 statistics sampled from 22433 (22924) to 22433 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.269), width:  16
 Scan time:  6.540

The best scores are:                                      opt bits E(85289)
NP_001265596 (OMIM: 201000,606144) ras-related pro ( 237) 1534 293.8 1.7e-79
NP_899050 (OMIM: 201000,606144) ras-related protei ( 237) 1534 293.8 1.7e-79
NP_001265595 (OMIM: 201000,606144) ras-related pro ( 237) 1534 293.8 1.7e-79
NP_001265597 (OMIM: 201000,606144) ras-related pro ( 237) 1534 293.8 1.7e-79
NP_057361 (OMIM: 201000,606144) ras-related protei ( 237) 1534 293.8 1.7e-79
NP_001304844 (OMIM: 612829) ras-related protein Ra ( 225)  452 93.7 2.7e-19
NP_612462 (OMIM: 612829) ras-related protein Rab-3 ( 227)  452 93.8 2.8e-19
XP_016857447 (OMIM: 179510) PREDICTED: ras-related ( 219)  441 91.7 1.1e-18
NP_002858 (OMIM: 179510) ras-related protein Rab-3 ( 219)  441 91.7 1.1e-18
NP_002857 (OMIM: 179490) ras-related protein Rab-3 ( 220)  438 91.1 1.6e-18
XP_011526466 (OMIM: 179490) PREDICTED: ras-related ( 220)  438 91.1 1.6e-18
NP_006852 (OMIM: 604199) ras-related protein Rab-3 ( 201)  437 90.9 1.7e-18
NP_055303 (OMIM: 605693) ras-related protein Rab-3 ( 203)  428 89.3 5.5e-18
NP_001272990 (OMIM: 605693) ras-related protein Ra ( 203)  428 89.3 5.5e-18
NP_001272988 (OMIM: 605693) ras-related protein Ra ( 203)  428 89.3 5.5e-18
NP_001272989 (OMIM: 605693) ras-related protein Ra ( 203)  428 89.3 5.5e-18
NP_004274 (OMIM: 604350) ras-related protein Rab-3 ( 219)  426 88.9 7.5e-18
NP_002861 (OMIM: 602672) ras-related protein Rab-1 ( 203)  419 87.6 1.8e-17
NP_004628 (OMIM: 600882,602298) ras-related protei ( 207)  410 85.9 5.6e-17
NP_001020471 (OMIM: 616448) ras-related protein Ra ( 244)  406 85.3   1e-16
XP_011528847 (OMIM: 605662) PREDICTED: ras-related ( 341)  407 85.6 1.2e-16
XP_005245626 (OMIM: 603949) PREDICTED: ras-related ( 203)  404 84.8 1.2e-16
NP_001129134 (OMIM: 603949) ras-related protein Ra ( 203)  404 84.8 1.2e-16
NP_003920 (OMIM: 603949) ras-related protein Rab-7 ( 203)  404 84.8 1.2e-16
XP_005245628 (OMIM: 603949) PREDICTED: ras-related ( 203)  404 84.8 1.2e-16
XP_005245627 (OMIM: 603949) PREDICTED: ras-related ( 203)  404 84.8 1.2e-16
XP_016884594 (OMIM: 605662) PREDICTED: ras-related ( 306)  405 85.2 1.4e-16
NP_004905 (OMIM: 605662) ras-related protein Rab-3 ( 333)  405 85.2 1.5e-16
XP_005261916 (OMIM: 605662) PREDICTED: ras-related ( 357)  405 85.3 1.5e-16
NP_057215 (OMIM: 612672) ras-related protein Rab-1 ( 200)  401 84.3 1.7e-16
NP_004209 (OMIM: 604198) ras-related protein Rab-1 ( 218)  398 83.7 2.7e-16
NP_002856 (OMIM: 179509) ras-related protein Rab-2 ( 212)  396 83.4 3.4e-16
NP_002860 (OMIM: 179513) ras-related protein Rab-6 ( 208)  395 83.2 3.9e-16
NP_057661 (OMIM: 615852) ras-related protein Rab-6 ( 208)  395 83.2 3.9e-16
NP_112243 (OMIM: 612565) ras-related protein Rab-1 ( 201)  394 83.0 4.3e-16
NP_057614 (OMIM: 613532) ras-related protein Rab-8 ( 207)  393 82.8   5e-16
XP_005269108 (OMIM: 179514) PREDICTED: ras-related ( 215)  393 82.8 5.1e-16
NP_002859 (OMIM: 179514) ras-related protein Rab-5 ( 215)  393 82.8 5.1e-16
NP_001238965 (OMIM: 179514) ras-related protein Ra ( 215)  393 82.8 5.1e-16
XP_005269109 (OMIM: 179514) PREDICTED: ras-related ( 215)  393 82.8 5.1e-16
NP_116235 (OMIM: 607466) ras-related protein Rab-2 ( 216)  393 82.8 5.1e-16
NP_057454 (OMIM: 300285) ras-related protein Rab-9 ( 201)  392 82.6 5.5e-16
NP_942599 (OMIM: 179513) ras-related protein Rab-6 ( 208)  391 82.4 6.4e-16
NP_055168 (OMIM: 605455) ras-related protein Rab-2 ( 256)  391 82.5 7.4e-16
XP_011523393 (OMIM: 604037) PREDICTED: ras-related ( 216)  390 82.3 7.5e-16
NP_004574 (OMIM: 604037) ras-related protein Rab-5 ( 216)  390 82.3 7.5e-16
XP_011523392 (OMIM: 604037) PREDICTED: ras-related ( 216)  390 82.3 7.5e-16
NP_958842 (OMIM: 604037) ras-related protein Rab-5 ( 216)  390 82.3 7.5e-16
NP_001238968 (OMIM: 604037) ras-related protein Ra ( 249)  390 82.3 8.3e-16
NP_004153 (OMIM: 179512) ras-related protein Rab-5 ( 215)  389 82.1 8.5e-16


>>NP_001265596 (OMIM: 201000,606144) ras-related protein  (237 aa)
 initn: 1534 init1: 1534 opt: 1534  Z-score: 1548.0  bits: 293.8 E(85289): 1.7e-79
Smith-Waterman score: 1534; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)

               10        20        30        40        50        60
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
              130       140       150       160       170       180

              190       200       210       220       230       
pF1KB4 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
              190       200       210       220       230       

>>NP_899050 (OMIM: 201000,606144) ras-related protein Ra  (237 aa)
 initn: 1534 init1: 1534 opt: 1534  Z-score: 1548.0  bits: 293.8 E(85289): 1.7e-79
Smith-Waterman score: 1534; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)

               10        20        30        40        50        60
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
              130       140       150       160       170       180

              190       200       210       220       230       
pF1KB4 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
              190       200       210       220       230       

>>NP_001265595 (OMIM: 201000,606144) ras-related protein  (237 aa)
 initn: 1534 init1: 1534 opt: 1534  Z-score: 1548.0  bits: 293.8 E(85289): 1.7e-79
Smith-Waterman score: 1534; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)

               10        20        30        40        50        60
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
              130       140       150       160       170       180

              190       200       210       220       230       
pF1KB4 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
              190       200       210       220       230       

>>NP_001265597 (OMIM: 201000,606144) ras-related protein  (237 aa)
 initn: 1534 init1: 1534 opt: 1534  Z-score: 1548.0  bits: 293.8 E(85289): 1.7e-79
Smith-Waterman score: 1534; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)

               10        20        30        40        50        60
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
              130       140       150       160       170       180

              190       200       210       220       230       
pF1KB4 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
              190       200       210       220       230       

>>NP_057361 (OMIM: 201000,606144) ras-related protein Ra  (237 aa)
 initn: 1534 init1: 1534 opt: 1534  Z-score: 1548.0  bits: 293.8 E(85289): 1.7e-79
Smith-Waterman score: 1534; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)

               10        20        30        40        50        60
pF1KB4 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
              130       140       150       160       170       180

              190       200       210       220       230       
pF1KB4 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
              190       200       210       220       230       

>>NP_001304844 (OMIM: 612829) ras-related protein Rab-3C  (225 aa)
 initn: 442 init1: 285 opt: 452  Z-score: 467.3  bits: 93.7 E(85289): 2.7e-19
Smith-Waterman score: 452; 34.0% identity (77.1% similar) in 188 aa overlap (3-189:22-209)

                                  10        20        30        40 
pF1KB4                    MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKT
                            .....  .:....::..:::.:.. ::    ::. . .:
NP_001 MELYGKMASAQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVST
               10        20        30        40        50        60

              50        60        70        80        90       100 
pF1KB4 IGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVS
       .:.::  . .  :.. ..:..:::::::.. .:: ::::::.. .:... :..:::.::.
NP_001 VGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQ
               70        80        90       100       110       120

             110        120       130       140       150       160
pF1KB4 SWREKVVAEVGD-IPTVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNE
       .:  .. .   :   ..:: :: :. :.  :..:... :...: ..:..::.:...::..
NP_001 DWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQ
              130       140       150       160       170       180

              170       180       190       200       210       220
pF1KB4 VFKYLAEKYLQKLKQQIAEDPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPN
       .:. :..   .:.....  :: .: ...:                               
NP_001 TFERLVDIICDKMSESLETDPAITAAKQNTRLKETPPPPQPNCAC               
              190       200       210       220                    

>>NP_612462 (OMIM: 612829) ras-related protein Rab-3C is  (227 aa)
 initn: 442 init1: 285 opt: 452  Z-score: 467.2  bits: 93.8 E(85289): 2.8e-19
Smith-Waterman score: 452; 34.0% identity (77.1% similar) in 188 aa overlap (3-189:24-211)

                                    10        20        30         
pF1KB4                      MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYK
                              .....  .:....::..:::.:.. ::    ::. . 
NP_612 MRHEAPMQMASAQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFV
               10        20        30        40        50        60

      40        50        60        70        80        90         
pF1KB4 KTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEA
       .:.:.::  . .  :.. ..:..:::::::.. .:: ::::::.. .:... :..:::.:
NP_612 STVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNA
               70        80        90       100       110       120

     100       110        120       130       140       150        
pF1KB4 VSSWREKVVAEVGD-IPTVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNV
       :..:  .. .   :   ..:: :: :. :.  :..:... :...: ..:..::.:...::
NP_612 VQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINV
              130       140       150       160       170       180

      160       170       180       190       200       210        
pF1KB4 NEVFKYLAEKYLQKLKQQIAEDPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLR
       ...:. :..   .:.....  :: .: ...:                             
NP_612 KQTFERLVDIICDKMSESLETDPAITAAKQNTRLKETPPPPQPNCAC             
              190       200       210       220                    

      220       230       
pF1KB4 PNKQRTKKNRNPFSSCSIP

>>XP_016857447 (OMIM: 179510) PREDICTED: ras-related pro  (219 aa)
 initn: 440 init1: 308 opt: 441  Z-score: 456.4  bits: 91.7 E(85289): 1.1e-18
Smith-Waterman score: 441; 33.5% identity (74.5% similar) in 188 aa overlap (3-189:16-203)

                            10        20        30        40       
pF1KB4              MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL
                      .....  .:....::..:::.:.. ::    ::  . .:.:.:: 
XP_016 MASVTDGKTGVKDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFK
               10        20        30        40        50        60

        50        60        70        80        90       100       
pF1KB4 ERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKV
        . .  ... :.:..:::::::.. .:: ::::::.. .:... :..:::.::..:  ..
XP_016 VKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI
               70        80        90       100       110       120

       110        120       130       140       150       160      
pF1KB4 VAEVGD-IPTVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLA
        .   :   ..:: :: :. ..  . .:... ::..: . :...:.::...: ..:. :.
XP_016 KTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV
              130       140       150       160       170       180

        170       180       190       200       210       220      
pF1KB4 EKYLQKLKQQIAEDPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKK
       .   .:.....  :: .  ::.:                                     
XP_016 DAICDKMSDSLDTDPSMLGSSKNTRLSDTPPLLQQNCSC                     
              190       200       210                              

>>NP_002858 (OMIM: 179510) ras-related protein Rab-3B [H  (219 aa)
 initn: 440 init1: 308 opt: 441  Z-score: 456.4  bits: 91.7 E(85289): 1.1e-18
Smith-Waterman score: 441; 33.5% identity (74.5% similar) in 188 aa overlap (3-189:16-203)

                            10        20        30        40       
pF1KB4              MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL
                      .....  .:....::..:::.:.. ::    ::  . .:.:.:: 
NP_002 MASVTDGKTGVKDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFK
               10        20        30        40        50        60

        50        60        70        80        90       100       
pF1KB4 ERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKV
        . .  ... :.:..:::::::.. .:: ::::::.. .:... :..:::.::..:  ..
NP_002 VKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI
               70        80        90       100       110       120

       110        120       130       140       150       160      
pF1KB4 VAEVGD-IPTVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLA
        .   :   ..:: :: :. ..  . .:... ::..: . :...:.::...: ..:. :.
NP_002 KTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV
              130       140       150       160       170       180

        170       180       190       200       210       220      
pF1KB4 EKYLQKLKQQIAEDPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKK
       .   .:.....  :: .  ::.:                                     
NP_002 DAICDKMSDSLDTDPSMLGSSKNTRLSDTPPLLQQNCSC                     
              190       200       210                              

>>NP_002857 (OMIM: 179490) ras-related protein Rab-3A [H  (220 aa)
 initn: 400 init1: 298 opt: 438  Z-score: 453.4  bits: 91.1 E(85289): 1.6e-18
Smith-Waterman score: 438; 35.3% identity (75.5% similar) in 184 aa overlap (3-184:16-199)

                            10        20        30        40       
pF1KB4              MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL
                      .....  .:....::..:::.:.. ::    ::  . .:.:.:: 
NP_002 MASATDSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK
               10        20        30        40        50        60

        50        60        70        80        90       100       
pF1KB4 ERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKV
        . :  ::. ..:..:::::::.. .:: ::::::.. .:... :..:::.::..:  ..
NP_002 VKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI
               70        80        90       100       110       120

       110        120       130       140       150       160      
pF1KB4 VAEVGDIPTVL-VQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLA
        .   :   :: : :: :. :.  ...:... :: .: ..:...:.:...::...:. :.
NP_002 KTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV
              130       140       150       160       170       180

        170        180       190       200       210       220     
pF1KB4 EKYLQKLKQQI-AEDPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTK
       .   .:..... . :: .:                                         
NP_002 DVICEKMSESLDTADPAVTGAKQGPQLSDQQVPPHQDCAC                    
              190       200       210       220                    




237 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:47:12 2016 done: Sat Nov  5 05:47:13 2016
 Total Scan time:  6.540 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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