GENSCAN 1.0	Date run:  5-Nov-116	Time: 05:41:38

Sequence gi568815590r:133138881_133384311 : 245431 bp : 47.04% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   5343   5545  203  2  2   53  113    87 0.426   6.05
 1.02 Intr +  12183  12290  108  0  0  102  101    41 0.710   6.20
 1.03 Intr +  16308  16369   62  0  2  129   69   -17 0.039  -1.12
 1.04 Intr +  35434  35502   69  2  0  108   83    18 0.377   2.45
 1.05 Intr +  45534  45701  168  1  0   74  109    47 0.606   5.32
 1.06 Intr +  52118  52333  216  0  0   21  113   127 0.031   6.98
 1.07 Intr +  58184  58244   61  0  1   34   66    88 0.315  -1.01
 1.08 Intr +  61378  61491  114  1  0   88   43    87 0.807   3.76
 1.09 Intr +  64654  64740   87  1  0   71   99    65 0.860   4.99
 1.10 Intr +  66592  66687   96  1  0   79   86    22 0.354   0.22
 1.11 Intr +  71274  71335   62  0  2   92   94     1 0.552  -0.52
 1.12 Intr +  72975  73045   71  1  2  120   62    34 0.609   2.90
 1.13 Intr +  73984  74263  280  0  1  145  113   139 0.919  19.15
 1.14 Intr +  81701  81961  261  0  0   79   72   281 0.498  23.06
 1.15 Intr +  86510  86703  194  0  2   48   98   126 0.487   8.81
 1.16 Term +  88531  88830  300  0  0  115   48   360 0.999  29.92
 1.17 PlyA +  89498  89503    6                               1.05

 2.19 PlyA -  90116  90111    6                               1.05
 2.18 Term - 100239  99998  242  1  2  127   48   325 0.909  28.59
 2.17 Intr - 103194 103143   52  0  1  117   79    81 0.848   8.58
 2.16 Intr - 105510 105475   36  0  0   93  109    37 0.949   4.76
 2.15 Intr - 106111 105985  127  0  1  104   46    21 0.437   0.18
 2.14 Intr - 109891 109835   57  0  0   94   73   102 0.967   7.30
 2.13 Intr - 111663 111560  104  0  2   74   72   208 0.982  16.77
 2.12 Intr - 115715 115659   57  2  0  109  113    19 0.977   5.58
 2.11 Intr - 117983 117897   87  2  0   75  100    75 0.970   7.57
 2.10 Intr - 119546 119486   61  1  1   93   68    57 0.985   2.94
 2.09 Intr - 120350 120288   63  1  0  117   86    48 0.961   5.33
 2.08 Intr - 123287 123167  121  0  1   94   76   198 0.998  18.75
 2.07 Intr - 125772 125667  106  0  1  112  103   134 0.962  17.09
 2.06 Intr - 128242 128198   45  1  0   83   89    49 0.721   3.11
 2.05 Intr - 145449 145369   81  0  0  121  105    80 0.991  12.83
 2.04 Intr - 146016 145877  140  1  2  109   91    12 0.725   3.78
 2.03 Intr - 153202 153110   93  2  0  101   64    16 0.455   0.44
 2.02 Intr - 162978 162891   88  0  1   71   28   206 0.224  12.44
 2.01 Init - 163116 163108    9  0  0   88   91     6 0.457   1.12
 2.00 Prom - 168608 168569   40                              -5.46

 3.00 Prom + 168977 169016   40                              -3.76
 3.01 Sngl + 187279 187524  246  0  0   36   42   262 0.671  11.48
 3.02 PlyA + 187551 187556    6                               1.05

 4.09 PlyA - 188146 188141    6                               1.05
 4.08 Term - 195860 195808   53  0  2   59   47    67 0.035  -2.71
 4.07 Intr - 200361 200260  102  1  0   78   50    70 0.050   2.35
 4.06 Intr - 200741 200709   33  0  0   98   72    27 0.034   0.29
 4.05 Intr - 208321 208122  200  0  2   78   37   118 0.142   4.69
 4.04 Intr - 219139 219094   46  2  1   88   85    29 0.071   0.07
 4.03 Intr - 219276 219189   88  0  1  115   40    28 0.102   0.24
 4.02 Intr - 238788 238676  113  1  2  127   95     4 0.323   5.10
 4.01 Init - 243744 243600  145  0  1   70  113    25 0.621   3.48

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 159001 158863  139  1  1  100   85    89 0.904  10.13


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:133138881_133384311|GENSCAN_predicted_peptide_1|783_aa
MHLDSQVHVNLARGDFRAQSMPVSKVSPGFCRRTLVIQVRDHRPASCSFQTSPETSMSPL
EGNKLRPRKLGTRFSTLLQNITGAIYHLEHRLAISYTPVSLSGWIWSLLVGWPGNNSFAQ
AAQGDAALSPHGQNVQIIKSINSAAVREMWSCRISERTVAFPGSPSCHAMQQGFPCIFSR
GHPDAKALEEAWETSPVAKTGATDLALIKPPKGCGRGISGAPDGPASLGPAPPRGGRILW
AARSMPVPLTSRHEVVPALDAGSSDSSSRQHRPGHGERNDDDDDDGGGGGGGGACRESDL
SKATSFSMGTGAQGLSPPGKELRRLEDDPHYPIGDDTNNCSLRLLEDVDITIILQMMKQA
QSRMMQAPYDSVFAKIIFSICRTGPGTPAQVAHGGRTERCKARALPFPSSHSSERGPGLF
RDRAKGTDGIQGGNQMGQQALSPAPTTMDFTPAPLEDTSSRPQFCKWPCECPPSPPRCPL
GVSLITDGCECCKMCAQQLGDNCTEAAICDPHRGLYCDYSGDRPRYAIGVCAQVVGVGCV
LDGVRYNNGQSFQPNCKYNCTCIDGAVGCTPLCLRVRPPRLWCPHPRRVSIPGHCCEQWV
CEDDAKRPRKTAPRDTGAFDAVGEVEAWHRNCIAYTSPWSPCSTSCGLGVSTRISNVNAQ
CWPEQESRLCNLRPCDVDIHTLIKAGKKCLAVYQPEASMNFTLAGCISTRSYQPKYCGVC
MDNRCCIPYKSKTIDVSFQCPDGLGFSRQVLWINACFCNLSCRNPNDIFADLESYPDFSE
IAN

>gi568815590r:133138881_133384311|GENSCAN_predicted_CDS_1|2352_bp
atgcacctggacagccaagtacatgtaaatttggccagaggagacttcagggcccagagc
atgcccgtcagcaaagtctcccctggcttctgcagaagaactctggtcatccaggtgagg
gaccacaggccagccagctgttccttccagacgtctccagaaacctctatgagtcccttg
gaaggtaacaaactcagaccaaggaagctgggaactcgcttctcaactctcctacagaat
atcactggtgccatttaccacttagaacatcgacttgcaatcagttacacacctgtctcc
ctctctggatggatttggtccttgcttgttgggtggccaggaaataacagctttgcacag
gctgctcaaggtgatgcagcgttgagcccacatgggcagaatgttcagattattaagtca
atcaactcagcagctgttagagagatgtggtcttgccgcatctccgagaggacagtggcc
tttccaggatctcccagctgtcatgcaatgcagcaagggtttccttgtatatttagcaga
ggccatcctgacgccaaagctcttgaggaggcttgggagacctcacctgtggccaagact
ggggctacagatcttgctttaataaaaccccccaagggctgcggaagaggcatatctggt
gctcctgatgggccggccagtctgggcccagctcccccgagaggtggtcggatcctctgg
gctgctcggtcgatgcctgtgccactgacgtccaggcatgaggtggttcctgccctggac
gctggcagcagtgacagcagcagccgccagcaccgtcctggccacggagaaagaaatgat
gatgatgatgatgatggtggtggtggtggtggtggtggtgcctgtagagaaagtgacttg
tccaaggccaccagcttcagcatggggactggagcccagggcctctcccctccagggaag
gagctcaggagactggaagacgatccccactaccccatcggggatgacactaataactgc
tcattaaggctgctggaggatgttgacatcaccatcattttacaaatgatgaaacaagct
cagagcagaatgatgcaggctccatatgacagtgtgtttgcaaagatcattttctccatc
tgcagaacaggcccaggcaccccagctcaggtagctcatggtgggcgcacagagagatgc
aaggcccgggccctgccctttccaagttcacattccagtgagcgaggcccaggtctcttt
cgagatagagcaaagggcacagatgggattcaggggggcaaccagatgggacagcaggcc
ctctctccagcccctacgaccatggactttaccccagctccactggaggacacctcctca
cgcccccaattctgcaagtggccatgtgagtgcccgccatccccaccccgctgcccgctg
ggggtcagcctcatcacagatggctgtgagtgctgtaagatgtgcgctcagcagcttggg
gacaactgcacggaggctgccatctgtgacccccaccggggcctctactgtgactacagc
ggggaccgcccgaggtacgcaataggagtgtgtgcacaggtggtcggtgtgggctgcgtc
ctggatggggtgcgctacaacaacggccagtccttccagcctaactgcaagtacaactgc
acgtgcatcgacggcgcggtgggctgcacaccactgtgcctccgagtgcgccccccgcgt
ctctggtgcccccacccgcggcgcgtgagcatacctggccactgctgtgagcagtgggta
tgtgaggacgacgccaagaggccacgcaagaccgcaccccgtgacacaggagccttcgat
gctgtgggtgaggtggaggcatggcacaggaactgcatagcctacacaagcccctggagc
ccttgctccaccagctgcggcctgggggtctccactcggatctccaatgttaacgcccag
tgctggcctgagcaagagagccgcctctgcaacttgcggccatgcgatgtggacatccat
acactcattaaggcagggaagaagtgtctggctgtgtaccagccagaggcatccatgaac
ttcacacttgcgggctgcatcagcacacgctcctatcaacccaagtactgtggagtttgc
atggacaataggtgctgcatcccctacaagtctaagactatcgacgtgtccttccagtgt
cctgatgggcttggcttctcccgccaggtcctatggattaatgcctgcttctgtaacctg
agctgtaggaatcccaatgacatctttgctgacttggaatcctaccctgacttctcagaa
attgccaactag

>gi568815590r:133138881_133384311|GENSCAN_predicted_peptide_2|522_aa
MKQVCKMPGGMRQDDDDDDDDDDDGDDDSEDEDGRLLSAKQITRAAKTPLRISRKISVVL
QKRAGSRESCTVGCVCVFTRMRVPVCLCVCITNLLLGLTVRLKLALCLYVAGDSRDMSRE
MQDVDLAEVKPLVEKGEKHDGGLGLAGFGVLQEQDIETLHGSVHVTLCGTPKGNRPVILT
YHDIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSMDQLAEM
LPGVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKIS
GWTQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRRDLEIER
PMPGTHTVTLHLPLLPCRQRCPFPGWLHSLTACNGLLRFGDFTGTLNVHHLGRMADCGGL
PQISQPAKLAEAFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRS
RSHTSEGTRSRSHTSEGAHLDITPNSGAAGNSAGPKSMEVSC

>gi568815590r:133138881_133384311|GENSCAN_predicted_CDS_2|1569_bp
atgaagcaggtgtgcaagatgccaggagggatgagacaagatgatgatgatgatgatgat
gatgatgatgatggtgatgatgacagtgaggatgaggacggtcgtcttctgtctgccaaa
caaattactcgtgctgccaaaactccactgagaatctccaggaagatctcggttgtattg
cagaaaagagcaggcagccgagagtcctgcaccgtggggtgtgtatgtgtgttcacgcgc
atgcgtgtgcctgtgtgtctgtgcgtctgcatcaccaaccttctgttagggctaactgtg
aggctgaagcttgcactatgcctatacgtggcaggtgacagcagggacatgtctcgggag
atgcaggatgtagacctcgctgaggtgaagcctttggtggagaaaggggagaagcacgat
ggtggcctggggctggctggcttcggggttctccaagagcaggacatcgagactttacat
ggctctgttcacgtcacgctgtgtgggactcccaagggaaaccggcctgtcatcctcacc
taccatgacatcggcatgaaccacaaaacctgctacaaccccctcttcaactacgaggac
atgcaggagatcacccagcactttgccgtctgccacgtggacgcccctggccagcaggac
ggcgcagcctccttccccgcagggtacatgtacccctccatggatcagctggctgaaatg
cttcctggagtccttcaacagtttgggctgaaaagcattattggcatgggaacaggagca
ggcgcctacatcctaactcgatttgctctaaacaaccctgagatggtggagggccttgtc
cttatcaacgtgaacccttgtgcggaaggctggatggactgggccgcctccaagatctca
ggatggacccaagctctgccggacatggtggtgtcccacctttttgggaaggaagaaatg
cagagtaacgtggaagtggtccacacctaccgccagcacattgtgaatgacatgaacccc
ggcaacctgcacctgttcatcaatgcctacaacagccggcgcgacctggagattgagcga
ccaatgccgggaacccacacagtcaccctgcacctccccctgctcccttgccgtcagcgc
tgcccatttccaggctggctgcacagtctcacagcctgcaatggcctcttgcggttcggt
gatttcacagggactttgaacgtccaccatttaggaaggatggcggactgtggcggcctc
ccgcagatctcccagccggccaagctcgctgaggccttcaagtacttcgtgcagggcatg
ggatacatgccctcggctagcatgacccgcctgatgcggtcccgcacagcctctggttcc
agcgtcacttctctggatggcacccgcagccgctcccacaccagcgagggcacccgaagc
cgctcccacaccagcgagggcacccgcagccgctcgcacaccagcgagggggcccacctg
gacatcacccccaactcgggtgctgctgggaacagcgccgggcccaagtccatggaggtc
tcctgctag

>gi568815590r:133138881_133384311|GENSCAN_predicted_peptide_3|81_aa
MPNIGYGSNQKTKHMLPSGFWKFLVHNVKELEVLLMCNKSYCADIAHNVASKNHKANMER
AAQLAIRVTNPNARQRGKENE

>gi568815590r:133138881_133384311|GENSCAN_predicted_CDS_3|246_bp
atgcccaacattggttatgggagcaaccaaaaaacaaagcacatgctgcccagtggcttc
tggaagttcctggtccacaatgtcaaggagctggaagtgctgctgatgtgcaataaatct
tactgtgctgacatcgctcacaatgttgcctccaagaaccacaaagccaacatggaaaga
gccgcccagctagccatcagagtcaccaaccctaatgccaggcagcgtggcaaagaaaat
gagtag

>gi568815590r:133138881_133384311|GENSCAN_predicted_peptide_4|259_aa
MHSVSYVQVCGDVNTVTQAELTAHAGLCTNTFWSIIASSPLIPLITLQGFCPSLKVNGHR
AMSRWKMQVEASSLSPLVCLVETCNKIMTFPKPSKSTDKNAQCMKTVKWDPATSHGDENE
PWKSLHGALGRWAADKDIPQARAGSENDHVRAQLETNCKWLRRRQTILEETCFKTSGFSP
PGQKYKTIKLQAGDMPPAALQAMCPDGRGPKLVGPPPLGALLLSVAAGSGERAEWTLEMP
TAGHSNSISEDSVSEYEVE

>gi568815590r:133138881_133384311|GENSCAN_predicted_CDS_4|780_bp
atgcacagcgtgtcctatgttcaggtttgtggtgatgtcaacacagtaactcaggctgaa
ctcacagcccacgctgggctctgcacaaacaccttctggagcattattgcatcatcacca
ttaatccccctgataaccctacaaggtttttgtccctctcttaaagtgaatggtcacaga
gccatgagcaggtggaagatgcaggtggaggcatcttccctgtcaccgttggtatgtctg
gttgaaacctgcaacaagatcatgaccttcccaaagccatctaagagtacagataaaaat
gcacagtgcatgaaaactgtgaaatgggatcccgccaccagccatggtgatgaaaatgag
ccctggaagtctttgcatggggcgctgggcagatgggctgctgataaagacataccacag
gccagagctggctctgaaaatgaccatgtccgagcccagctggaaaccaactgcaagtgg
ttgaggaggcggcagacgattctagaggagacatgcttcaagacttctggcttctctcca
ccaggacaaaaatacaaaacaatcaagctgcaggctggagacatgcctccagcagccttg
caggctatgtgtcctgatggcagagggcccaagctggtggggccgccaccattaggagca
ttattgctcagcgttgcagcaggaagtggggagcgtgcagagtggacactggagatgcca
actgcaggccacagcaactcaatatcagaagattcagtatcagaatatgaagtggaatga