Result of FASTA (ccds) for pF1KB4086
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4086, 520 aa
  1>>>pF1KB4086 520 - 520 aa - 520 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9012+/-0.00103; mu= 14.4133+/- 0.062
 mean_var=60.7611+/-11.784, 0's: 0 Z-trim(102.9): 23  B-trim: 2 in 1/47
 Lambda= 0.164536
 statistics sampled from 7130 (7138) to 7130 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.59), E-opt: 0.2 (0.219), width:  16
 Scan time:  3.060

The best scores are:                                      opt bits E(32554)
CCDS34154.1 HMGCS1 gene_id:3157|Hs108|chr5         ( 520) 3456 829.3       0
CCDS905.1 HMGCS2 gene_id:3158|Hs108|chr1           ( 508) 2218 535.4 5.9e-152
CCDS53353.1 HMGCS2 gene_id:3158|Hs108|chr1         ( 466) 1233 301.6 1.3e-81


>>CCDS34154.1 HMGCS1 gene_id:3157|Hs108|chr5              (520 aa)
 initn: 3456 init1: 3456 opt: 3456  Z-score: 4429.6  bits: 829.3 E(32554):    0
Smith-Waterman score: 3456; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)

               10        20        30        40        50        60
pF1KB4 MPGSLPLNAEACWPKDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MPGSLPLNAEACWPKDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 DREDINSLCMTVVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DREDINSLCMTVVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 EGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 IGPNAPLIFERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IGPNAPLIFERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 HAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 FGDVKLEDTYFDRDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FGDVKLEDTYFDRDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 SPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 DVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRPTPNDDTLDEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRPTPNDDTLDEG
              430       440       450       460       470       480

              490       500       510       520
pF1KB4 VGLVHSNIATEHIPSPAKKVPRLPATAAEPEAAVISNGEH
       ::::::::::::::::::::::::::::::::::::::::
CCDS34 VGLVHSNIATEHIPSPAKKVPRLPATAAEPEAAVISNGEH
              490       500       510       520

>>CCDS905.1 HMGCS2 gene_id:3158|Hs108|chr1                (508 aa)
 initn: 2218 init1: 2218 opt: 2218  Z-score: 2841.6  bits: 535.4 E(32554): 5.9e-152
Smith-Waterman score: 2218; 67.5% identity (89.7% similar) in 467 aa overlap (4-470:41-507)

                                          10        20        30   
pF1KB4                            MPGSLPLNAEACWPKDVGIVALEIYFPSQYVDQ
                                     ..::     :::::::.:::.:::.:::::
CCDS90 ILQLTRAVQETSLTPARLLPVAHQRFSTASAVPLAKTDTWPKDVGILALEVYFPAQYVDQ
               20        30        40        50        60        70

            40        50        60        70        80        90   
pF1KB4 AELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNLMERNNLSYDCIGRLEVG
       ..::::..:.:::::.::::..::::. .:::::::.:::: :::: .: .: .::::::
CCDS90 TDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERIQLPWDSVGRLEVG
               80        90       100       110       120       130

           100       110       120       130       140       150   
pF1KB4 TETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYA
       :::::::::.::: ::.::..::::::::::::::::::::..:::.::.::::::::::
CCDS90 TETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSSWDGRYA
              140       150       160       170       180       190

           160       170       180       190       200       210   
pF1KB4 LVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFERGLRGTHMQHAYDFYKPDMLSEY
       .:: :::::: .::::::::.::::.::::.::: .:::::::::...::::::.. :::
CCDS90 MVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLALERGLRGTHMENVYDFYKPNLASEY
              200       210       220       230       240       250

           220       230       240       250       260       270   
pF1KB4 PIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQK
       ::::::::::::: ::::::. : :::. ::.. :.:. :::.:. .::::.:.::.:::
CCDS90 PIVDGKLSIQCYLRALDRCYTSYRKKIQNQWKQAGSDRPFTLDDLQYMIFHTPFCKMVQK
              260       270       280       290       300       310

           280       290       300       310       320       330   
pF1KB4 SLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFSQKTKA
       ::::...::::. ..  ..:.:.:::::: .:::::: ..:..::..:::...:..::::
CCDS90 SLARLMFNDFLSASSDTQTSLYKGLEAFGGLKLEDTYTNKDLDKALLKASQDMFDKKTKA
              320       330       340       350       360       370

           340       350       360       370       380       390   
pF1KB4 SLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDAT
       :: .:..::::::::.:: :::.:...: :.:::.:::.:::::::::...:..:.:::.
CCDS90 SLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYGSGLAASFFSFRVSQDAA
              380       390       400       410       420       430

           400       410       420       430       440       450   
pF1KB4 PGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDTHHLVNYIPQGSIDSLFEGTW
       ::: :::...:  :: .:: ::  :.:. :.: :. ::. .: ::. : :. .::: :::
CCDS90 PGSPLDKLVSSTSDLPKRLASRKCVSPEEFTEIMNQREQFYHKVNFSPPGDTNSLFPGTW
              440       450       460       470       480       490

           460       470       480       490       500       510   
pF1KB4 YLVRVDEKHRRTYARRPTPNDDTLDEGVGLVHSNIATEHIPSPAKKVPRLPATAAEPEAA
       :: ::::.::: :::::                                           
CCDS90 YLERVDEQHRRKYARRPV                                          
              500                                                  

>>CCDS53353.1 HMGCS2 gene_id:3158|Hs108|chr1              (466 aa)
 initn: 1233 init1: 1233 opt: 1233  Z-score: 1578.6  bits: 301.6 E(32554): 1.3e-81
Smith-Waterman score: 1899; 60.4% identity (81.4% similar) in 467 aa overlap (4-470:41-465)

                                          10        20        30   
pF1KB4                            MPGSLPLNAEACWPKDVGIVALEIYFPSQYVDQ
                                     ..::     :::::::.:::.:::.:::::
CCDS53 ILQLTRAVQETSLTPARLLPVAHQRFSTASAVPLAKTDTWPKDVGILALEVYFPAQYVDQ
               20        30        40        50        60        70

            40        50        60        70        80        90   
pF1KB4 AELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNLMERNNLSYDCIGRLEVG
       ..::::..:.:::::.::::..::::. .:::::::.:::: :::: .: .: .::::::
CCDS53 TDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERIQLPWDSVGRLEVG
               80        90       100       110       120       130

           100       110       120       130       140       150   
pF1KB4 TETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYA
       :::::::::.::: ::.::..::::::::::::::::::::..:::.::.:::::::   
CCDS53 TETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSSWDG---
              140       150       160       170       180          

           160       170       180       190       200       210   
pF1KB4 LVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFERGLRGTHMQHAYDFYKPDMLSEY
                                              ::::::...::::::.. :::
CCDS53 ---------------------------------------LRGTHMENVYDFYKPNLASEY
                                              190       200        

           220       230       240       250       260       270   
pF1KB4 PIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQK
       ::::::::::::: ::::::. : :::. ::.. :.:. :::.:. .::::.:.::.:::
CCDS53 PIVDGKLSIQCYLRALDRCYTSYRKKIQNQWKQAGSDRPFTLDDLQYMIFHTPFCKMVQK
      210       220       230       240       250       260        

           280       290       300       310       320       330   
pF1KB4 SLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFSQKTKA
       ::::...::::. ..  ..:.:.:::::: .:::::: ..:..::..:::...:..::::
CCDS53 SLARLMFNDFLSASSDTQTSLYKGLEAFGGLKLEDTYTNKDLDKALLKASQDMFDKKTKA
      270       280       290       300       310       320        

           340       350       360       370       380       390   
pF1KB4 SLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDAT
       :: .:..::::::::.:: :::.:...: :.:::.:::.:::::::::...:..:.:::.
CCDS53 SLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYGSGLAASFFSFRVSQDAA
      330       340       350       360       370       380        

           400       410       420       430       440       450   
pF1KB4 PGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDTHHLVNYIPQGSIDSLFEGTW
       ::: :::...:  :: .:: ::  :.:. :.: :. ::. .: ::. : :. .::: :::
CCDS53 PGSPLDKLVSSTSDLPKRLASRKCVSPEEFTEIMNQREQFYHKVNFSPPGDTNSLFPGTW
      390       400       410       420       430       440        

           460       470       480       490       500       510   
pF1KB4 YLVRVDEKHRRTYARRPTPNDDTLDEGVGLVHSNIATEHIPSPAKKVPRLPATAAEPEAA
       :: ::::.::: :::::                                           
CCDS53 YLERVDEQHRRKYARRPV                                          
      450       460                                                




520 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:36:12 2016 done: Sat Nov  5 05:36:13 2016
 Total Scan time:  3.060 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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