GENSCAN 1.0	Date run:  5-Nov-116	Time: 05:29:21

Sequence gi568815578f:5027093_5290231 : 263139 bp : 43.91% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  41357  41410   54  1  0   86   70    85 0.771   7.78
 1.02 Intr +  43959  44042   84  2  0   29   58   106 0.335   1.72
 1.03 Intr +  56782  56865   84  0  0   94   95   -10 0.024   0.32
 1.04 Intr +  67784  67842   59  1  2   61  101    23 0.050  -1.42
 1.05 Term +  70141  70279  139  1  1   69   38   123 0.282   2.84
 1.06 PlyA +  72101  72106    6                               1.05

 2.07 PlyA -  72781  72776    6                               1.05
 2.06 Term -  73839  73699  141  0  0   91   42   260 0.999  19.63
 2.05 Intr -  79218  79096  123  0  0   94   86   105 0.978  11.68
 2.04 Intr -  82353  82240  114  0  0   46   99   138 0.651  11.34
 2.03 Intr -  85459  85360  100  0  1  101   17    37 0.582  -1.99
 2.02 Intr -  85848  85651  198  2  0   41   57   111 0.551   1.77
 2.01 Init -  85936  85869   68  1  2   49  107    97 0.986   6.34
 2.00 Prom -  86604  86565   40                              -8.76

 3.07 PlyA -  87888  87883    6                               1.05
 3.06 Term -  88270  88191   80  2  2  112   48    80 0.910   4.33
 3.05 Intr -  88480  88357  124  1  1  110   91    59 0.996   8.56
 3.04 Intr -  90572  90378  195  2  0   72   87   145 0.999  12.41
 3.03 Intr -  91585  91518   68  2  2   64   81    68 0.990   2.32
 3.02 Intr -  91774  91677   98  0  2   93  108    89 0.994  11.05
 3.01 Init -  92706  92486  221  0  2   90   99   417 0.987  41.10
 3.00 Prom - 105416 105377   40                              -3.26

 4.00 Prom + 115720 115759   40                              -3.46
 4.01 Init + 139316 139318    3  1  0   71  101     0 0.132  -0.40
 4.02 Intr + 143125 143292  168  0  0   72   43    80 0.185   2.04
 4.03 Intr + 146431 146567  137  0  2   78   86    87 0.645   6.87
 4.04 Intr + 148091 148187   97  2  1   79   97    16 0.666   1.61
 4.05 Intr + 149556 149653   98  2  2  106  107   102 0.988  12.71
 4.06 Intr + 151725 151864  140  0  2  111   57    45 0.900   3.81
 4.07 Intr + 155295 155353   59  1  2   77   58    55 0.842   0.00
 4.08 Intr + 155969 156051   83  1  2   87   85    35 0.899   1.54
 4.09 Intr + 157766 157853   88  2  1   99   94    45 0.957   6.17
 4.10 Intr + 158666 158734   69  1  0   95   82    76 0.992   7.08
 4.11 Intr + 159595 159747  153  0  0   93   71   269 0.997  25.97
 4.12 Intr + 161975 162094  120  1  0   87   19   161 0.994   9.79
 4.13 Intr + 162643 162746  104  0  2  101   80   166 0.995  16.07
 4.14 Term + 163010 163142  133  2  1   78   50   219 0.997  14.66
 4.15 PlyA + 163292 163297    6                              -0.45

 5.03 PlyA - 163770 163765    6                               1.05
 5.02 Term - 164740 164628  113  2  2   48   49   109 0.650   1.72
 5.01 Init - 167489 167408   82  2  1   96  110    13 0.546   5.43
 5.00 Prom - 167733 167694   40                              -5.56

 6.03 PlyA - 167757 167752    6                               1.05
 6.02 Term - 169539 169434  106  2  1   85   44   107 0.928   3.88
 6.01 Init - 172711 172542  170  1  2   59  110    66 0.537   4.91
 6.00 Prom - 172796 172757   40                              -2.46

 7.00 Prom + 173090 173129   40                              -6.46
 7.01 Sngl + 173458 174111  654  0  0   43   48   243 0.979  11.98
 7.02 PlyA + 174143 174148    6                               1.05

 8.02 PlyA - 178698 178693    6                               1.05
 8.01 Sngl - 198971 198825  147  2  0   78   54   120 0.667   1.64
 8.00 Prom - 209154 209115   40                              -1.96

 9.02 PlyA - 209911 209906    6                               1.05
 9.01 Sngl - 213778 213380  399  1  0   64   54   339 0.967  24.36
 9.00 Prom - 218690 218651   40                              -3.46

10.00 Prom + 230312 230351   40                              -2.26
10.01 Init + 240887 240935   49  1  1   74  100    21 0.021   3.01
10.02 Term + 250827 252106 1280  1  2   49   43   541 0.223  37.46
10.03 PlyA + 253746 253751    6                               1.05

11.00 Prom + 257027 257066   40                              -5.96
11.01 Sngl + 259617 260117  501  2  0   17   37   248 0.807   8.64
11.02 PlyA + 260549 260554    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578f:5027093_5290231|GENSCAN_predicted_peptide_1|139_aa
MVEGKGEAGTFFTAHQDRVNGNGVVVRGYSILKSQLIMSLDAPEMMVQGIHVQVCYVGKL
CIVGVWYTDYFVTQLQGQLVLLPRFLMVTSYFLITSQFLAEQKCLWYDHVKLNQETHQSG
NGSEISIICRTAEATGEGF

>gi568815578f:5027093_5290231|GENSCAN_predicted_CDS_1|420_bp
atggtggaaggcaaaggagaagcaggcaccttcttcacagcgcaccaggacagagtgaat
ggcaatggagtagttgtccgagggtactcaatactcaagagtcagctgatcatgtcctta
gatgcaccagaaatgatggttcagggaatacatgtgcaagtttgttacgtgggtaaatta
tgtatcgtgggggtttggtatactgactatttcgtcacccagctacagggacagctggtc
ttactgcccaggttcctcatggtcacctcctatttcctaatcacctcacaattcctggca
gaacagaagtgcctctggtatgaccacgtgaagctcaaccaagagacccaccagagtggc
aacggatctgaaatttccatcatatgcagaacagctgaagcaactggagagggtttttag

>gi568815578f:5027093_5290231|GENSCAN_predicted_peptide_2|247_aa
MQPWALPTVGELWVCGRPGAALRAGTEPSSRALGVSETALPAEIKLRVIRVGHSSPLAQL
ASFQKPVLFVLRLNSRRFLFLSLARSEDGILFAKSKHSSPLSLTPLRCIVLMRMYEQLMS
GDLCQRVMMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLF
LIGAFLIIIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYD
DIPDFDD

>gi568815578f:5027093_5290231|GENSCAN_predicted_CDS_2|744_bp
atgcaaccttgggcgctgccaaccgtgggcgagctctgggtgtgcgggcggcctggcgcg
gcgctccgggcggggacagaaccgtcctctcgggctctgggcgtgtccgagaccgcgctc
cccgccgaaatcaagctccgagtcatccgtgtggggcattcgtcccccctggcacagttg
gcctctttccagaagcccgttttgtttgttttacgtctaaattcgcgtcggttcttattt
ctctccctggcaaggtctgaagacggaatcctctttgccaagagtaaacattcgtctccc
ctctccctcacgcccctgcgatgtattgttttgatgcggatgtatgaacagttaatgtca
ggggacctgtgtcagcgtgttatgatgccgtcccgtaccaacctggctactggaatcccc
agtagtaaagtgaaatattcaaggctctccagcacagacgatggctacattgaccttcag
tttaagaaaacccctcctaagatcccttataaggccatcgcacttgccactgtgctgttt
ttgattggcgcctttctcattattataggctccctcctgctgtcaggctacatcagcaaa
gggggggcagaccgggccgttccagtgctgatcattggcattctggtgttcctacccgga
ttttaccacctgcgcatcgcttactatgcatccaaaggctaccgtggttactcctatgat
gacattccagactttgatgactag

>gi568815578f:5027093_5290231|GENSCAN_predicted_peptide_3|261_aa
MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY
RCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMD
LDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNI
KLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYK
IADMGHLKYYLAPKIEDEEGS

>gi568815578f:5027093_5290231|GENSCAN_predicted_CDS_3|786_bp
atgttcgaggcgcgcctggtccagggctccatcctcaagaaggtgttggaggcactcaag
gacctcatcaacgaggcctgctgggatattagctccagcggtgtaaacctgcagagcatg
gactcgtcccacgtctctttggtgcagctcaccctgcggtctgagggcttcgacacctac
cgctgcgaccgcaacctggccatgggcgtgaacctcaccagtatgtccaaaatactaaaa
tgcgccggcaatgaagatatcattacactaagggccgaagataacgcggataccttggcg
ctagtatttgaagcaccaaaccaggagaaagtttcagactatgaaatgaagttgatggat
ttagatgttgaacaacttggaattccagaacaggagtacagctgtgtagtaaagatgcct
tctggtgaatttgcacgtatatgccgagatctcagccatattggagatgctgttgtaatt
tcctgtgcaaaagacggagtgaaattttctgcaagtggagaacttggaaatggaaacatt
aaattgtcacagacaagtaatgtcgataaagaggaggaagctgttaccatagagatgaat
gaaccagttcaactaacttttgcactgaggtacctgaacttctttacaaaagccactcca
ctctcttcaacggtgacactcagtatgtctgcagatgtaccccttgttgtagagtataaa
attgcggatatgggacacttaaaatactacttggctcccaagatcgaggatgaagaagga
tcttag

>gi568815578f:5027093_5290231|GENSCAN_predicted_peptide_4|483_aa
MKVFLDISPPRCAQRSKLMNVFSMYHLSCGKEHGFQVPACFQTLCGSCRWHSASFSGESE
SEAKVDGETASDSESRAESAPLPVSADDTPEVLNRALSNLSSRWKNWWVRGILTLAMIAF
FFIIIYLGPMVLMIIVMCVQIKCFHEIITIGYNVYHSYDLPWFRTLSWYFLLCVNYFFYG
ETVTDYFFTLVQREEPLRILSKYHRFISFTLYLIGFCMFVLSLVKKHYRLQFYMFGWTHV
TLLIVVTQSHLVIHNLFEGMIWFIVPISCVICNDIMAYMFGFFFGRTPLIKLSPKKTWEG
FIGGFFATVVFGLLLSYVMSGYRCFVCPVEYNNDTNSFTVDCEPSDLFRLQEYNIPGVIQ
SVIGWKTVRMYPFQIHSIALSTFASLIGPFGGFFASGFKRAFKIKDFANTIPGHGGIMDR
FDCQYLMATFVNVYIASFIRGPNPSKLIQQFLTLRPDQQLHIFNTLRSHLIDKGMLTSTT
EDE

>gi568815578f:5027093_5290231|GENSCAN_predicted_CDS_4|1452_bp
atgaaagtttttcttgacatctccccacctcgctgtgcccagaggagcaaactgatgaat
gtgttcagcatgtaccacctttcttgtgggaaggagcatgggttccaggtccctgcctgc
ttccagaccctctgtggaagctgccgctggcactcagcttccttttccggggagtcagag
tcagaagcaaaggtagatggagagactgcatcggacagtgagagccgggcagaatccgca
cccctgccagtctctgcagatgataccccggaggtcctcaatagggccctttccaacttg
tcttcaagatggaagaactggtgggtgagaggcatcctgactttggccatgattgcattt
ttcttcatcatcatttacctgggaccaatggttttgatgataatcgtgatgtgcgttcag
attaagtgtttccatgagataatcactattggctacaacgtctaccactcatatgatctg
ccctggttcaggacgctcagctggtactttctcctgtgtgtaaactatttcttctatggt
gagacagtgacggattacttcttcaccctggtccagagagaagagcctttgcggattctc
agtaaataccaccggttcatttcctttactctctatctaataggattctgcatgtttgta
ctgagtctggtcaagaagcattatcgactgcagttctacatgtttggctggacccatgtg
acattgctgattgttgtaacacagtcacatcttgttatccacaacctatttgaaggaatg
atctggttcattgtccccatatcttgtgtgatctgtaatgacatcatggcctatatgttt
ggctttttctttggtcggaccccactcatcaagctgtccccgaagaagacctgggaaggc
ttcattgggggcttctttgctactgtggtgtttggccttctgctgtcctatgtgatgtcc
gggtacagatgctttgtctgccctgtggagtacaacaatgacaccaacagcttcactgtg
gactgtgagccctcggacctgtttcgcctgcaggagtacaacattcctggggtgatccag
tcagtcattggctggaaaacggtccggatgtaccccttccagattcacagcatcgctctc
tccacctttgcctcgctcattggcccctttggaggattcttcgcaagtggattcaaacga
gcctttaaaatcaaagactttgccaataccattcctggccatggaggcatcatggatcgc
tttgactgccagtatctgatggccacctttgtcaatgtatacatcgccagttttatcaga
ggccctaacccaagcaaactgattcagcagttcctgactttacggccagatcagcagctc
cacatcttcaacacgctgcggtctcatctgatcgacaaagggatgctgacatccaccaca
gaggacgagtag

>gi568815578f:5027093_5290231|GENSCAN_predicted_peptide_5|64_aa
MVPIQTGDSLNQETAPDENSLHPPERPGALDLNKRSHEAEMEIKVQRKEAASAPHTYGKS
LKDV

>gi568815578f:5027093_5290231|GENSCAN_predicted_CDS_5|195_bp
atggtccctatacaaacaggtgacagccttaatcaagagacagccccagatgagaacagc
ctccatccacctgagaggccaggggccttggacctgaataagagaagccacgaggctgaa
atggaaataaaagttcagcggaaagaagccgcttcagccccacacacatatgggaagtca
ctcaaggatgtgtga

>gi568815578f:5027093_5290231|GENSCAN_predicted_peptide_6|91_aa
MIDWIKKMWHIYTVEYHAAIKKDEFMSFVGTWMKLETIILSKLSQEQKTKHRMFSRRKAS
IQEPSAGVKKRHPNCEDRGGYVDDYRQTQFH

>gi568815578f:5027093_5290231|GENSCAN_predicted_CDS_6|276_bp
atgatagactggattaagaaaatgtggcacatatacaccgtggaataccacgcagccata
aaaaaggatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctc
agcaaactatcgcaagaacaaaaaaccaaacaccgcatgttctcacgcagaaaagccagc
atacaagaacctagcgcaggtgtcaaaaaaaggcatccaaactgcgaggacagaggtggc
tatgtggatgattatcggcaaacacagtttcactag

>gi568815578f:5027093_5290231|GENSCAN_predicted_peptide_7|217_aa
MNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGSFNIRKSINVIQYINRTNEKNHM
IISIDAEKAFDKIQQCFMLKTLNKLGIDGMYLKIIRAIYDKPTASIILNGQKLEAFPLKT
GTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLRKEEVKLSLFADDMIVYLENPIVSA
QNLLKLIGNFSKVSGYKINVQKSQAFLYTNNRQTAKS

>gi568815578f:5027093_5290231|GENSCAN_predicted_CDS_7|654_bp
atgaacatcgatgcaaaaatcctcaataaaatactggcaaaccgaatccagcagcacatc
aaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctcattcaac
atacgcaaatcaataaatgtaatccagtatataaacagaaccaacgaaaaaaaccatatg
attatctcaatagatgcagaaaaggcctttgacaaaattcaacaatgcttcatgctaaaa
acgctcaataaattaggtattgatgggatgtacctcaaaataataagagctatctatgac
aaacccacagccagtatcatactgaatgggcaaaaactggaagcattccctttgaaaact
ggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctg
gccagggcaatcaggcaggagaaagaaataaagggtattcagttgagaaaagaggaagtc
aaattgtccctctttgcagatgacatgattgtgtatctagaaaaccccatcgtctcagcc
caaaatctccttaagctgataggcaacttcagcaaagtctcaggatacaaaatcaatgtg
caaaaatcacaagcattcttatacaccaataacagacaaacagccaaatcatga

>gi568815578f:5027093_5290231|GENSCAN_predicted_peptide_8|48_aa
MEYYAAIKKDESMSFAGTWMKLETIIIVSKLSQGQKTKHRMFSLGIEQ

>gi568815578f:5027093_5290231|GENSCAN_predicted_CDS_8|147_bp
atggaatactatgcagccataaaaaaggatgagtccatgtcctttgcagggacatggatg
aagttggaaaccatcatcattgtcagcaaactatcacaaggacagaaaaccaaacaccgc
atgttctcactgggaattgaacaatga

>gi568815578f:5027093_5290231|GENSCAN_predicted_peptide_9|132_aa
MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE
HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER
ISEIEDQLNEIK

>gi568815578f:5027093_5290231|GENSCAN_predicted_CDS_9|399_bp
atgaggaaaaaccagtgcaaaaaggctgaaaattccaaaaaccagaatgcctcttctcct
ccaaaggatcacaactcctcgccagcaagggaacaagactggacggggaatgagtttgat
gaactgacagaagtaggcttcagaaggtgggtaatcacaaactcctccaagctaaaggag
catgttctaacccaatgcaaggaagttaagaaccttgaaaaaaggttagacaaattgcta
actggaataaacagtttagagaagaacataaatgacctgatggagcttaaaaacacagca
cgagaacttcgtgaagcatacacaagtatcaatagccgaattgatcaagcagaagaaaga
atatcagagattgaagatcaacttaatgaaataaagtga

>gi568815578f:5027093_5290231|GENSCAN_predicted_peptide_10|442_aa
MQNPVVPSWCSHREDEAPHHTYSKIDHIVGSKALLSKCKRTEIITNYLSDHSTIKLELRI
KKLTQNRSITWKLNNLLLNDYWVHNEMKAEIKMFFETNENKDTTYQNLWNTFKAVCRGKF
IALNAHKRKQERSKIDTLTSQLKELEKQEQTHSKASRRQEITKIRAELKEIETQKTLQKI
NESRSWFFERINKIDRLLARLIKKKREKNQIDAIKNDKGDITTDPTEIQTTIREYYKHLY
ANKLENLEVMDKFLDTYTLPRLNQEEVESLNRPITGAEIVAIINSLPTKKSPGPDGFTAE
FYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNID
AKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRTKDKNHMIISI
DAEKAFDKIQQPFMLKTLNSLF

>gi568815578f:5027093_5290231|GENSCAN_predicted_CDS_10|1329_bp
atgcagaatcctgtggtcccatcttggtgtagccacagggaagatgaagcaccacaccac
acctattccaaaattgaccacatagttggaagtaaagctctcctcagcaaatgtaaaaga
acagaaattataacaaactatctctcagaccacagtacaatcaaactagaactcaggatt
aagaaactcactcaaaaccgctcaattacgtggaaactgaacaacctgctcctgaacgac
tactgggtacataacgaaatgaaggcagaaataaagatgttctttgaaaccaacgagaac
aaagacacaacataccagaatctctggaacacattcaaagcagtgtgtagagggaaattt
atagcactaaatgcccacaagagaaagcaggaaagatccaaaattgacaccctaacatca
caattaaaagaactagaaaagcaagagcaaacacattcaaaagctagcagaaggcaagaa
ataactaaaatcagagcagaactgaaggaaatagagacacaaaaaacccttcaaaaaatt
aatgaatccaggagctggttttttgaaaggatcaacaaaattgatagactgctagcaaga
ctaataaagaaaaaaagagagaagaatcaaatagatgcaataaaaaatgataaaggggat
atcaccactgatcccacagaaatacaaactaccatcagagaatactacaaacacctctac
gcaaataaactagaaaatctagaagtaatggataaattccttgacacatacactctccca
agactaaaccaggaagaagttgaatctctgaatagaccaataacaggagctgaaattgtg
gcaataatcaatagcttaccaaccaaaaagagtccaggaccagatggattcacagccgaa
ttctaccagaggtacaaggaggaactggtaccattccttctgaaactcttccaatcaata
gaaaaagagggaatcctccctaactcattttatgaggccagcatcatcctgataccaaag
ccgggcagagacacaaccaaaaaagagaattttagaccaatatccttgatgaacattgat
gcaaaaatcctcaataaaatactggcaaacagaatccagcagcacatcaaaaagcttatc
caccatgatcaagtgggcttcatccctgggatgcaaggctggttcaatatacgcaaatca
ataaatgtaatccagcatataaacagaaccaaagataaaaaccacatgattatctcaata
gatgcagaaaaggcctttgacaaaattcaacaacccttcatgctaaaaactctcaactca
cttttttag

>gi568815578f:5027093_5290231|GENSCAN_predicted_peptide_11|166_aa
MIISIDADKAFNKIQHRFMIKTLSKIGIQGTYLNVIKAIYDKPTANIILMGEKLKAFPLR
MGTRQGCPLSLLLFNIVLEVLARVIRQEKEIKGIQIGKEEVKLSFFADDMIIYLENPKNS
SRNLLNLIKEFSKASGYKINVHKSVALLYTNSDQADNQIRNSFLLQ

>gi568815578f:5027093_5290231|GENSCAN_predicted_CDS_11|501_bp
atgatcatctcaatagatgcagacaaagcattcaacaaaatccagcatcgctttatgatt
aaaactctcagcaaaatcggcatacaagggacatacctcaatgtaataaaagccatctat
gacaaacccacagccaacataatactaatgggggaaaagttgaaagctttccctttgaga
atgggaacaagacaaggatgcccactctcgctactcctcttcaacatagtactggaagtc
ctagccagagtaatcagacaagagaaagaaataaagggcatccaaattggtaaagaggaa
gtcaaactgtcattttttgctgacgatatgatcatttacctcgaaaaccctaaaaactcc
tccagaaatctcctaaacctgataaaagaattcagcaaagcttccggatacaagattaat
gtacacaaatcagtagctcttctatacaccaacagcgaccaagcggataatcaaatcagg
aactcattccttttacaatag