FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3848, 134 aa
  1>>>pF1KB3848 134 - 134 aa - 134 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1430+/-0.000737; mu= 0.2819+/- 0.045
 mean_var=202.1347+/-39.925, 0's: 0 Z-trim(116.3): 9  B-trim: 30 in 1/54
 Lambda= 0.090210
 statistics sampled from 16938 (16943) to 16938 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.52), width:  16
 Scan time:  1.790

The best scores are:                                      opt bits E(32554)
CCDS4396.1 CPLX2 gene_id:10814|Hs108|chr5          ( 134)  880 125.2 1.2e-29
CCDS46995.1 CPLX1 gene_id:10815|Hs108|chr4         ( 134)  744 107.5 2.5e-24


>>CCDS4396.1 CPLX2 gene_id:10814|Hs108|chr5               (134 aa)
 initn: 880 init1: 880 opt: 880  Z-score: 645.8  bits: 125.2 E(32554): 1.2e-29
Smith-Waterman score: 880; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KB3 MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
               70        80        90       100       110       120

              130    
pF1KB3 LKYLPGPLQDMFKK
       ::::::::::::::
CCDS43 LKYLPGPLQDMFKK
              130    

>>CCDS46995.1 CPLX1 gene_id:10815|Hs108|chr4              (134 aa)
 initn: 744 init1: 744 opt: 744  Z-score: 550.1  bits: 107.5 E(32554): 2.5e-24
Smith-Waterman score: 744; 84.3% identity (92.5% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KB3 MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAERE
       :.::::::::::::::::::::.::::::: :::::::::::: :::::::.:.::::::
CCDS46 MEFVMKQALGGATKDMGKMLGGDEEKDPDAAKKEEERQEALRQAEEERKAKYAKMEAERE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 KVRQQIRDKYGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTV
        ::: ::::::.:::::.::: .::.:   :::::::::::: ::::: :::.:::::::
CCDS46 AVRQGIRDKYGIKKKEEREAEAQAAMEANSEGSLTRPKKAIPPGCGDEVEEEDESILDTV
               70        80        90       100       110       120

              130    
pF1KB3 LKYLPGPLQDMFKK
       .::::::::::.::
CCDS46 IKYLPGPLQDMLKK
              130    




134 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:25:14 2016 done: Sat Nov  5 05:25:15 2016
 Total Scan time:  1.790 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]