Result of FASTA (omim) for
pF1KB3659
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3659, 312 aa
1>>>pF1KB3659 312 - 312 aa - 312 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9051+/-0.000423; mu= 17.5841+/- 0.026
mean_var=63.7760+/-13.145, 0's: 0 Z-trim(111.2): 265 B-trim: 1552 in 2/47
Lambda= 0.160600
statistics sampled from 19389 (19677) to 19389 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.231), width: 16
Scan time: 6.420
The best scores are: opt bits E(85289)
NP_003347 (OMIM: 601665,602044) mitochondrial unco ( 312) 2073 489.2 4.4e-138
NP_073714 (OMIM: 601665,602044) mitochondrial unco ( 275) 1828 432.4 4.9e-121
NP_003346 (OMIM: 601693,607447) mitochondrial unco ( 309) 1476 350.9 1.9e-96
XP_005263263 (OMIM: 113730,601665) PREDICTED: mito ( 306) 1186 283.7 3.2e-76
NP_068605 (OMIM: 113730,601665) mitochondrial brow ( 307) 1182 282.8 6.1e-76
XP_011530530 (OMIM: 113730,601665) PREDICTED: mito ( 277) 1040 249.8 4.5e-66
NP_004268 (OMIM: 613725) mitochondrial uncoupling ( 323) 613 151.0 3.1e-36
NP_001269127 (OMIM: 300242) brain mitochondrial ca ( 290) 605 149.1 1e-35
NP_001269125 (OMIM: 300242) brain mitochondrial ca ( 322) 605 149.1 1.1e-35
NP_001269124 (OMIM: 300242) brain mitochondrial ca ( 325) 605 149.1 1.1e-35
XP_011529704 (OMIM: 300242) PREDICTED: brain mitoc ( 334) 605 149.1 1.1e-35
NP_001010875 (OMIM: 610793) kidney mitochondrial c ( 291) 589 145.4 1.3e-34
XP_016876013 (OMIM: 610793) PREDICTED: kidney mito ( 291) 589 145.4 1.3e-34
NP_003553 (OMIM: 604165) mitochondrial 2-oxoglutar ( 314) 571 141.2 2.6e-33
XP_016885425 (OMIM: 300242) PREDICTED: brain mitoc ( 306) 566 140.1 5.6e-33
XP_016885428 (OMIM: 300242) PREDICTED: brain mitoc ( 338) 566 140.1 6.1e-33
XP_016885427 (OMIM: 300242) PREDICTED: brain mitoc ( 341) 566 140.1 6.1e-33
XP_016885426 (OMIM: 300242) PREDICTED: brain mitoc ( 350) 566 140.1 6.3e-33
NP_001190980 (OMIM: 613725) mitochondrial uncoupli ( 300) 565 139.8 6.5e-33
XP_005249540 (OMIM: 613725) PREDICTED: mitochondri ( 310) 565 139.8 6.7e-33
NP_001273735 (OMIM: 610793) kidney mitochondrial c ( 240) 560 138.6 1.2e-32
XP_005262546 (OMIM: 300242) PREDICTED: brain mitoc ( 224) 539 133.7 3.4e-31
NP_001158889 (OMIM: 604165) mitochondrial 2-oxoglu ( 303) 536 133.1 6.9e-31
XP_011533329 (OMIM: 610793) PREDICTED: kidney mito ( 216) 528 131.1 1.9e-30
NP_001273736 (OMIM: 610793) kidney mitochondrial c ( 216) 528 131.1 1.9e-30
NP_036272 (OMIM: 606794) mitochondrial dicarboxyla ( 287) 519 129.1 1e-29
XP_016879709 (OMIM: 606794) PREDICTED: mitochondri ( 244) 508 126.5 5.2e-29
XP_016885429 (OMIM: 300242) PREDICTED: brain mitoc ( 240) 500 124.7 1.9e-28
NP_001257817 (OMIM: 606794) mitochondrial dicarbox ( 296) 491 122.7 9.3e-28
NP_001158890 (OMIM: 604165) mitochondrial 2-oxoglu ( 263) 466 116.8 4.7e-26
NP_997231 (OMIM: 610817) solute carrier family 25 ( 304) 443 111.6 2.1e-24
XP_016876012 (OMIM: 610793) PREDICTED: kidney mito ( 293) 441 111.1 2.8e-24
XP_005266378 (OMIM: 610793) PREDICTED: kidney mito ( 293) 441 111.1 2.8e-24
XP_006719856 (OMIM: 610793) PREDICTED: kidney mito ( 293) 441 111.1 2.8e-24
XP_006719857 (OMIM: 610793) PREDICTED: kidney mito ( 293) 441 111.1 2.8e-24
XP_005266379 (OMIM: 610793) PREDICTED: kidney mito ( 254) 436 109.9 5.7e-24
XP_016885431 (OMIM: 300242) PREDICTED: brain mitoc ( 197) 426 107.5 2.3e-23
XP_016885430 (OMIM: 300242) PREDICTED: brain mitoc ( 197) 426 107.5 2.3e-23
XP_016885432 (OMIM: 300242) PREDICTED: brain mitoc ( 157) 404 102.3 6.6e-22
XP_016867001 (OMIM: 613725) PREDICTED: mitochondri ( 195) 399 101.2 1.8e-21
NP_001190981 (OMIM: 613725) mitochondrial uncoupli ( 245) 393 99.9 5.5e-21
NP_001307799 (OMIM: 610818) solute carrier family ( 300) 387 98.6 1.7e-20
XP_011533328 (OMIM: 610793) PREDICTED: kidney mito ( 218) 380 96.9 4.1e-20
NP_000378 (OMIM: 212138,613698) mitochondrial carn ( 301) 354 90.9 3.4e-18
XP_011522148 (OMIM: 610818) PREDICTED: solute carr ( 291) 345 88.8 1.4e-17
NP_001269126 (OMIM: 300242) brain mitochondrial ca ( 353) 344 88.7 1.9e-17
XP_016880417 (OMIM: 606521,607196,613710) PREDICTE ( 215) 332 85.7 8.9e-17
XP_011523400 (OMIM: 606521,607196,613710) PREDICTE ( 215) 332 85.7 8.9e-17
XP_011529705 (OMIM: 300242) PREDICTED: brain mitoc ( 205) 330 85.2 1.2e-16
NP_005975 (OMIM: 190315,615182) tricarboxylate tra ( 311) 320 83.1 8.2e-16
>>NP_003347 (OMIM: 601665,602044) mitochondrial uncoupli (312 aa)
initn: 2073 init1: 2073 opt: 2073 Z-score: 2599.9 bits: 489.2 E(85289): 4.4e-138
Smith-Waterman score: 2073; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312)
10 20 30 40 50 60
pF1KB3 MVGLKPSDVPPTMAVKFLGAGTAACFADLVTFPLDTAKVRLQIQGENQAVQTARLVQYRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MVGLKPSDVPPTMAVKFLGAGTAACFADLVTFPLDTAKVRLQIQGENQAVQTARLVQYRG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 VLGTILTMVRTEGPCSPYNGLVAGLQRQMSFASIRIGLYDSVKQVYTPKGADNSSLTTRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VLGTILTMVRTEGPCSPYNGLVAGLQRQMSFASIRIGLYDSVKQVYTPKGADNSSLTTRI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LAGCTTGAMAVTCAQPTDVVKVRFQASIHLGPSRSDRKYSGTMDAYRTIAREEGVRGLWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LAGCTTGAMAVTCAQPTDVVKVRFQASIHLGPSRSDRKYSGTMDAYRTIAREEGVRGLWK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 GTLPNIMRNAIVNCAEVVTYDILKEKLLDYHLLTDNFPCHFVSAFGAGFCATVVASPVDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GTLPNIMRNAIVNCAEVVTYDILKEKLLDYHLLTDNFPCHFVSAFGAGFCATVVASPVDV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 VKTRYMNSPPGQYFSPLDCMIKMVAQEGPTAFYKGFTPSFLRLGSWNVVMFVTYEQLKRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VKTRYMNSPPGQYFSPLDCMIKMVAQEGPTAFYKGFTPSFLRLGSWNVVMFVTYEQLKRA
250 260 270 280 290 300
310
pF1KB3 LMKVQMLRESPF
::::::::::::
NP_003 LMKVQMLRESPF
310
>>NP_073714 (OMIM: 601665,602044) mitochondrial uncoupli (275 aa)
initn: 1828 init1: 1828 opt: 1828 Z-score: 2293.9 bits: 432.4 E(85289): 4.9e-121
Smith-Waterman score: 1828; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)
10 20 30 40 50 60
pF1KB3 MVGLKPSDVPPTMAVKFLGAGTAACFADLVTFPLDTAKVRLQIQGENQAVQTARLVQYRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 MVGLKPSDVPPTMAVKFLGAGTAACFADLVTFPLDTAKVRLQIQGENQAVQTARLVQYRG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 VLGTILTMVRTEGPCSPYNGLVAGLQRQMSFASIRIGLYDSVKQVYTPKGADNSSLTTRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 VLGTILTMVRTEGPCSPYNGLVAGLQRQMSFASIRIGLYDSVKQVYTPKGADNSSLTTRI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LAGCTTGAMAVTCAQPTDVVKVRFQASIHLGPSRSDRKYSGTMDAYRTIAREEGVRGLWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 LAGCTTGAMAVTCAQPTDVVKVRFQASIHLGPSRSDRKYSGTMDAYRTIAREEGVRGLWK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 GTLPNIMRNAIVNCAEVVTYDILKEKLLDYHLLTDNFPCHFVSAFGAGFCATVVASPVDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 GTLPNIMRNAIVNCAEVVTYDILKEKLLDYHLLTDNFPCHFVSAFGAGFCATVVASPVDV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 VKTRYMNSPPGQYFSPLDCMIKMVAQEGPTAFYKGFTPSFLRLGSWNVVMFVTYEQLKRA
:::::::::::::::::::::::::::::::::::
NP_073 VKTRYMNSPPGQYFSPLDCMIKMVAQEGPTAFYKG
250 260 270
310
pF1KB3 LMKVQMLRESPF
>>NP_003346 (OMIM: 601693,607447) mitochondrial uncoupli (309 aa)
initn: 1412 init1: 778 opt: 1476 Z-score: 1852.4 bits: 350.9 E(85289): 1.9e-96
Smith-Waterman score: 1476; 72.2% identity (87.5% similar) in 313 aa overlap (1-312:1-309)
10 20 30 40 50
pF1KB3 MVGLKPSDVPPTMAVKFLGAGTAACFADLVTFPLDTAKVRLQIQGENQA-VQTARLVQYR
:::.: .::::: .:::::::::::.:::.::::::::::::::::.:. :... .:::
NP_003 MVGFKATDVPPTATVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGPVRATASAQYR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 GVLGTILTMVRTEGPCSPYNGLVAGLQRQMSFASIRIGLYDSVKQVYTPKGADNSSLTTR
::.:::::::::::: : ::::::::::::::::.:::::::::: :: ::....:. .:
NP_003 GVMGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYT-KGSEHASIGSR
70 80 90 100 110
120 130 140 150 160 170
pF1KB3 ILAGCTTGAMAVTCAQPTDVVKVRFQASIHLGPSRSDRKYSGTMDAYRTIAREEGVRGLW
.::: ::::.::. :::::::::::::. . : . :.:..:..::.::::::: ::::
NP_003 LLAGSTTGALAVAVAQPTDVVKVRFQAQARAG---GGRRYQSTVNAYKTIAREEGFRGLW
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 KGTLPNIMRNAIVNCAEVVTYDILKEKLLDYHLLTDNFPCHFVSAFGAGFCATVVASPVD
::: ::. :::::::::.::::..:. :: .:.::..::::.::::::::.::.:::::
NP_003 KGTSPNVARNAIVNCAELVTYDLIKDALLKANLMTDDLPCHFTSAFGAGFCTTVIASPVD
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB3 VVKTRYMNSPPGQYFSPLDCMIKMVAQEGPTAFYKGFTPSFLRLGSWNVVMFVTYEQLKR
::::::::: ::: : : . :. .::: :::::: ::::::::::::::::::::::
NP_003 VVKTRYMNSALGQYSSAGHCALTMLQKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR
240 250 260 270 280 290
300 310
pF1KB3 ALMKVQMLRESPF
::: . ::.::
NP_003 ALMAACTSREAPF
300
>>XP_005263263 (OMIM: 113730,601665) PREDICTED: mitochon (306 aa)
initn: 1113 init1: 662 opt: 1186 Z-score: 1489.4 bits: 283.7 E(85289): 3.2e-76
Smith-Waterman score: 1186; 59.1% identity (82.8% similar) in 303 aa overlap (1-303:1-297)
10 20 30 40 50 60
pF1KB3 MVGLKPSDVPPTMAVKFLGAGTAACFADLVTFPLDTAKVRLQIQGENQAVQTARLVQYRG
: :: ::: ::..:....:: :::.::..::::::::::::.::: :. ...:.:
XP_005 MGGLTASDVHPTLGVQLFSAGIAACLADVITFPLDTAKVRLQVQGE---CPTSSVIRYKG
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 VLGTILTMVRTEGPCSPYNGLVAGLQRQMSFASIRIGLYDSVKQVYTPKGADNSSLTTRI
::::: ..:.::: . :.:: ::::::.: ::.::::::.:.. : : .. :: ..:
XP_005 VLGTITAVVKTEGRMKLYSGLPAGLQRQISSASLRIGLYDTVQEFLTA-GKETPSLGSKI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 LAGCTTGAMAVTCAQPTDVVKVRFQASIHLGPSRSDRKYSGTMDAYRTIAREEGVRGLWK
::: :::..:: .:::.:::::.::. :: . .:.::..::: :: ::. ::::
XP_005 LAGLTTGGVAVFIGQPTEVVKVRLQAQSHLHGIKP--RYTGTYNAYRIIATTEGLTGLWK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB3 GTLPNIMRNAIVNCAEVVTYDILKEKLLDYHLLTDNFPCHFVSAFGAGFCATVVASPVDV
:: ::.::..:.::.:.::::..:: .. ..:.:. :::.:::. ::::::...:::::
XP_005 GTTPNLMRSVIINCTELVTYDLMKEAFVKNNILADDVPCHLVSALIAGFCATAMSSPVDV
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB3 VKTRYMNSPPGQYFSPLDCMIKMVAQEGPTAFYKGFTPSFLRLGSWNVVMFVTYEQLKRA
::::..::::::: : .: .:. ..::::::.::..:::::::::::.::: .:::::
XP_005 VKTRFINSPPGQYKSVPNCAMKVFTNEGPTAFFKGLVPSFLRLGSWNVIMFVCFEQLKRE
240 250 260 270 280 290
310
pF1KB3 LMKVQMLRESPF
: :
XP_005 LSKSRQTMDCAT
300
>>NP_068605 (OMIM: 113730,601665) mitochondrial brown fa (307 aa)
initn: 1257 init1: 662 opt: 1182 Z-score: 1484.3 bits: 282.8 E(85289): 6.1e-76
Smith-Waterman score: 1182; 58.7% identity (81.8% similar) in 303 aa overlap (1-303:1-298)
10 20 30 40 50 60
pF1KB3 MVGLKPSDVPPTMAVKFLGAGTAACFADLVTFPLDTAKVRLQIQGENQAVQTARLVQYRG
: :: ::: ::..:....:: :::.::..::::::::::::.::: :. ...:.:
NP_068 MGGLTASDVHPTLGVQLFSAGIAACLADVITFPLDTAKVRLQVQGE---CPTSSVIRYKG
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 VLGTILTMVRTEGPCSPYNGLVAGLQRQMSFASIRIGLYDSVKQVYTPKGADNSSLTTRI
::::: ..:.::: . :.:: ::::::.: ::.::::::.:.. : :: ..:
NP_068 VLGTITAVVKTEGRMKLYSGLPAGLQRQISSASLRIGLYDTVQEFLTAGKETAPSLGSKI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 LAGCTTGAMAVTCAQPTDVVKVRFQASIHLGPSRSDRKYSGTMDAYRTIAREEGVRGLWK
::: :::..:: .:::.:::::.::. :: . .:.::..::: :: ::. ::::
NP_068 LAGLTTGGVAVFIGQPTEVVKVRLQAQSHLHGIKP--RYTGTYNAYRIIATTEGLTGLWK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB3 GTLPNIMRNAIVNCAEVVTYDILKEKLLDYHLLTDNFPCHFVSAFGAGFCATVVASPVDV
:: ::.::..:.::.:.::::..:: .. ..:.:. :::.:::. ::::::...:::::
NP_068 GTTPNLMRSVIINCTELVTYDLMKEAFVKNNILADDVPCHLVSALIAGFCATAMSSPVDV
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB3 VKTRYMNSPPGQYFSPLDCMIKMVAQEGPTAFYKGFTPSFLRLGSWNVVMFVTYEQLKRA
::::..::::::: : .: .:. ..::::::.::..:::::::::::.::: .:::::
NP_068 VKTRFINSPPGQYKSVPNCAMKVFTNEGPTAFFKGLVPSFLRLGSWNVIMFVCFEQLKRE
240 250 260 270 280 290
310
pF1KB3 LMKVQMLRESPF
: :
NP_068 LSKSRQTMDCAT
300
>>XP_011530530 (OMIM: 113730,601665) PREDICTED: mitochon (277 aa)
initn: 1044 init1: 528 opt: 1040 Z-score: 1307.2 bits: 249.8 E(85289): 4.5e-66
Smith-Waterman score: 1040; 56.8% identity (80.6% similar) in 278 aa overlap (1-278:1-273)
10 20 30 40 50 60
pF1KB3 MVGLKPSDVPPTMAVKFLGAGTAACFADLVTFPLDTAKVRLQIQGENQAVQTARLVQYRG
: :: ::: ::..:....:: :::.::..::::::::::::.::: :. ...:.:
XP_011 MGGLTASDVHPTLGVQLFSAGIAACLADVITFPLDTAKVRLQVQGE---CPTSSVIRYKG
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 VLGTILTMVRTEGPCSPYNGLVAGLQRQMSFASIRIGLYDSVKQVYTPKGADNSSLTTRI
::::: ..:.::: . :.:: ::::::.: ::.::::::.:.. : :: ..:
XP_011 VLGTITAVVKTEGRMKLYSGLPAGLQRQISSASLRIGLYDTVQEFLTAGKETAPSLGSKI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 LAGCTTGAMAVTCAQPTDVVKVRFQASIHLGPSRSDRKYSGTMDAYRTIAREEGVRGLWK
::: :::..:: .:::.:::::.::. :: . .:.::..::: :: ::. ::::
XP_011 LAGLTTGGVAVFIGQPTEVVKVRLQAQSHLHGIKP--RYTGTYNAYRIIATTEGLTGLWK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB3 GTLPNIMRNAIVNCAEVVTYDILKEKLLDYHLLTDNFPCHFVSAFGAGFCATVVASPVDV
:: ::.::..:.::.:.::::..:: .. ..:.:. :::.:::. ::::::...:::::
XP_011 GTTPNLMRSVIINCTELVTYDLMKEAFVKNNILADDVPCHLVSALIAGFCATAMSSPVDV
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB3 VKTRYMNSPPGQYFSPLDCMIKMVAQEGPTAFYKGFTPSFLRLGSWNVVMFVTYEQLKRA
::::..::::::: : .: .:. ..::::::.:: :
XP_011 VKTRFINSPPGQYKSVPNCAMKVFTNEGPTAFFKGKIPHIGK
240 250 260 270
310
pF1KB3 LMKVQMLRESPF
>>NP_004268 (OMIM: 613725) mitochondrial uncoupling prot (323 aa)
initn: 570 init1: 285 opt: 613 Z-score: 771.5 bits: 151.0 E(85289): 3.1e-36
Smith-Waterman score: 613; 35.5% identity (65.2% similar) in 310 aa overlap (14-312:20-323)
10 20 30 40 50
pF1KB3 MVGLKPSDVPPTMAVKFLGAGTAACFADLVTFPLDTAKVRLQIQGENQAVQT--
: ::: .: :: :.:.::::: .:.:::.::: ..
NP_004 MSVPEEEERLLPLTQRWPRASKFLLSGCAATVAELATFPLDLTKTRLQMQGEAALARLGD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 -ARL-VQYRGVLGTILTMVRTEGPCSPYNGLVAGLQRQMSFASIRIGLYDSVKQVYTPKG
:: . :::.. : : ... :: . ..:.. .. :.. ... :. :. ...: :.
NP_004 GARESAPYRGMVRTALGIIEEEGFLKLWQGVTPAIYRHVVYSGGRMVTYEHLREVVFGKS
70 80 90 100 110 120
120 130 140 150 160
pF1KB3 ADNS-SLTTRILAGCTTGAMAVTCAQPTDVVKVRFQASIHLGPSRSDRKYSGTMDAYRTI
:. : ...: .:... :.:::.:::..: . . .. :. :. :
NP_004 EDEHYPLWKSVIGGMMAGVIGQFLANPTDLVKVQMQMEGKRKLEGKPLRFRGVHHAFAKI
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB3 AREEGVRGLWKGTLPNIMRNAIVNCAEVVTYDILKEKLLDYHLLTDNFPCHFVSAFGAGF
: :.:::: : .:::.: :.:: ....::: .:. :. : ::. : .:.. .:.
NP_004 LAEGGIRGLWAGWVPNIQRAALVNMGDLTTYDTVKHYLVLNTPLEDNIMTHGLSSLCSGL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB3 CATVVASPVDVVKTRYMNSPPGQ------YFSPLDCMIKMVAQEGPTAFYKGFTPSFLRL
:.....:.::.:.: ::.: . : : ::.:. : :: ..:::: ::.::.
NP_004 VASILGTPADVIKSRIMNQPRDKQGRGLLYKSSTDCLIQAVQGEGFMSLYKGFLPSWLRM
250 260 270 280 290 300
290 300 310
pF1KB3 GSWNVVMFVTYEQLKRALMKVQMLRESPF
:..:...:::... .: :::
NP_004 TPWSMVFWLTYEKIR------EMSGVSPF
310 320
>>NP_001269127 (OMIM: 300242) brain mitochondrial carrie (290 aa)
initn: 667 init1: 235 opt: 605 Z-score: 762.2 bits: 149.1 E(85289): 1e-35
Smith-Waterman score: 676; 38.8% identity (73.2% similar) in 291 aa overlap (17-299:9-287)
10 20 30 40 50
pF1KB3 MVGLKPSDVPPTMAVKFLGAGTAACFADLVTFPLDTAKVRLQIQGENQAVQTARL--VQY
:. .: :. :.. :::.: .:.:::.:: :... ::. ..:
NP_001 MSGLNWKPFVYGGLASIVAEFGTFPVDLTKTRLQVQG--QSID-ARFKEIKY
10 20 30 40
60 70 80 90 100 110
pF1KB3 RGVLGTILTMVRTEGPCSPYNGLVAGLQRQMSFASIRIGLYDSVKQVYTPKGADNSSLTT
::.. ... . . :: . :.:.. .: :: :...:.::.:.:.:.... . :.. :
NP_001 RGMFHALFRICKEEGVLALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDET-LLI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB3 RILAGCTTGAMAVTCAQPTDVVKVRFQASIHLGPSRSDRKYSGTM-DAYRTIAREEGVRG
.. : ..:... : :.::::.:.:.::. : ..:.: .. : ..::.::
NP_001 NMICGVVSGVISSTIANPTDVLKIRMQAQGSL--------FQGSMIGSFIDIYQQEGTRG
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB3 LWKGTLPNIMRNAIVNCAEVVTYDILKEKLLDYHLLTDNFPCHFVSAFGAGFCATVVASP
::.:..:. .: ::: .:. .::: :..:. .. :.. ::::.: :. ......:
NP_001 LWRGVVPTAQRAAIVVGVELPVYDITKKHLILSGMMGDTILTHFVSSFTCGLAGALASNP
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB3 VDVVKTRYMNSPP--GQ---YFSPLDCMIKMVAQEGPTAFYKGFTPSFLRLGSWNVVMFV
::::.::.::. :. : . .: ..:: .:: :.:::: :..:::: ::...:.
NP_001 VDVVRTRMMNQRAIVGHVDLYKGTVDGILKMWKHEGFFALYKGFWPNWLRLGPWNIIFFI
230 240 250 260 270 280
300 310
pF1KB3 TYEQLKRALMKVQMLRESPF
:::::::
NP_001 TYEQLKRLQI
290
>>NP_001269125 (OMIM: 300242) brain mitochondrial carrie (322 aa)
initn: 667 init1: 235 opt: 605 Z-score: 761.5 bits: 149.1 E(85289): 1.1e-35
Smith-Waterman score: 676; 38.8% identity (73.2% similar) in 291 aa overlap (17-299:41-319)
10 20 30 40
pF1KB3 MVGLKPSDVPPTMAVKFLGAGTAACFADLVTFPLDTAKVRLQIQGE
:. .: :. :.. :::.: .:.:::.::
NP_001 FLRVKFATAAVIHQKSTTVSHEMSGLNWKPFVYGGLASIVAEFGTFPVDLTKTRLQVQG-
20 30 40 50 60
50 60 70 80 90 100
pF1KB3 NQAVQTARL--VQYRGVLGTILTMVRTEGPCSPYNGLVAGLQRQMSFASIRIGLYDSVKQ
:... ::. ..:::.. ... . . :: . :.:.. .: :: :...:.::.:.:.:.
NP_001 -QSID-ARFKEIKYRGMFHALFRICKEEGVLALYSGIAPALLRQASYGTIKIGIYQSLKR
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 VYTPKGADNSSLTTRILAGCTTGAMAVTCAQPTDVVKVRFQASIHLGPSRSDRKYSGTM-
... . :.. : .. : ..:... : :.::::.:.:.::. : ..:.:
NP_001 LFVERLEDET-LLINMICGVVSGVISSTIANPTDVLKIRMQAQGSL--------FQGSMI
130 140 150 160 170
170 180 190 200 210 220
pF1KB3 DAYRTIAREEGVRGLWKGTLPNIMRNAIVNCAEVVTYDILKEKLLDYHLLTDNFPCHFVS
.. : ..::.::::.:..:. .: ::: .:. .::: :..:. .. :.. ::::
NP_001 GSFIDIYQQEGTRGLWRGVVPTAQRAAIVVGVELPVYDITKKHLILSGMMGDTILTHFVS
180 190 200 210 220 230
230 240 250 260 270
pF1KB3 AFGAGFCATVVASPVDVVKTRYMNSPP--GQ---YFSPLDCMIKMVAQEGPTAFYKGFTP
.: :. ......:::::.::.::. :. : . .: ..:: .:: :.:::: :
NP_001 SFTCGLAGALASNPVDVVRTRMMNQRAIVGHVDLYKGTVDGILKMWKHEGFFALYKGFWP
240 250 260 270 280 290
280 290 300 310
pF1KB3 SFLRLGSWNVVMFVTYEQLKRALMKVQMLRESPF
..:::: ::...:.:::::::
NP_001 NWLRLGPWNIIFFITYEQLKRLQI
300 310 320
>>NP_001269124 (OMIM: 300242) brain mitochondrial carrie (325 aa)
initn: 667 init1: 235 opt: 605 Z-score: 761.5 bits: 149.1 E(85289): 1.1e-35
Smith-Waterman score: 676; 38.8% identity (73.2% similar) in 291 aa overlap (17-299:44-322)
10 20 30 40
pF1KB3 MVGLKPSDVPPTMAVKFLGAGTAACFADLVTFPLDTAKVRLQIQGE
:. .: :. :.. :::.: .:.:::.::
NP_001 VKFATAAVIVSGHQKSTTVSHEMSGLNWKPFVYGGLASIVAEFGTFPVDLTKTRLQVQG-
20 30 40 50 60 70
50 60 70 80 90 100
pF1KB3 NQAVQTARL--VQYRGVLGTILTMVRTEGPCSPYNGLVAGLQRQMSFASIRIGLYDSVKQ
:... ::. ..:::.. ... . . :: . :.:.. .: :: :...:.::.:.:.:.
NP_001 -QSID-ARFKEIKYRGMFHALFRICKEEGVLALYSGIAPALLRQASYGTIKIGIYQSLKR
80 90 100 110 120 130
110 120 130 140 150 160
pF1KB3 VYTPKGADNSSLTTRILAGCTTGAMAVTCAQPTDVVKVRFQASIHLGPSRSDRKYSGTM-
... . :.. : .. : ..:... : :.::::.:.:.::. : ..:.:
NP_001 LFVERLEDET-LLINMICGVVSGVISSTIANPTDVLKIRMQAQGSL--------FQGSMI
140 150 160 170 180
170 180 190 200 210 220
pF1KB3 DAYRTIAREEGVRGLWKGTLPNIMRNAIVNCAEVVTYDILKEKLLDYHLLTDNFPCHFVS
.. : ..::.::::.:..:. .: ::: .:. .::: :..:. .. :.. ::::
NP_001 GSFIDIYQQEGTRGLWRGVVPTAQRAAIVVGVELPVYDITKKHLILSGMMGDTILTHFVS
190 200 210 220 230 240
230 240 250 260 270
pF1KB3 AFGAGFCATVVASPVDVVKTRYMNSPP--GQ---YFSPLDCMIKMVAQEGPTAFYKGFTP
.: :. ......:::::.::.::. :. : . .: ..:: .:: :.:::: :
NP_001 SFTCGLAGALASNPVDVVRTRMMNQRAIVGHVDLYKGTVDGILKMWKHEGFFALYKGFWP
250 260 270 280 290 300
280 290 300 310
pF1KB3 SFLRLGSWNVVMFVTYEQLKRALMKVQMLRESPF
..:::: ::...:.:::::::
NP_001 NWLRLGPWNIIFFITYEQLKRLQI
310 320
312 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:18:28 2016 done: Sat Nov 5 05:18:29 2016
Total Scan time: 6.420 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]