FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3590, 131 aa
  1>>>pF1KB3590 131 - 131 aa - 131 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3640+/-0.000671; mu= 16.5646+/- 0.040
 mean_var=66.0212+/-12.985, 0's: 0 Z-trim(110.8): 37  B-trim: 2 in 1/51
 Lambda= 0.157846
 statistics sampled from 11882 (11915) to 11882 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.366), width:  16
 Scan time:  1.540

The best scores are:                                      opt bits E(32554)
CCDS6394.1 LY6E gene_id:4061|Hs108|chr8            ( 131)  880 208.1 1.2e-54


>>CCDS6394.1 LY6E gene_id:4061|Hs108|chr8                 (131 aa)
 initn: 880 init1: 880 opt: 880  Z-score: 1094.3  bits: 208.1 E(32554): 1.2e-54
Smith-Waterman score: 880; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)

               10        20        30        40        50        60
pF1KB3 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL
               70        80        90       100       110       120

              130 
pF1KB3 SLLPALLRFGP
       :::::::::::
CCDS63 SLLPALLRFGP
              130 




131 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:13:03 2016 done: Sat Nov  5 05:13:03 2016
 Total Scan time:  1.540 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]