GENSCAN 1.0	Date run:  5-Nov-116	Time: 05:06:12

Sequence gi568815575r:40834985_41035832 : 200848 bp : 42.39% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +     35    935  901  1  1   52   72   926 0.884  81.86
 1.02 Term +   7867   8003  137  2  2   76   40   117 0.841   2.90
 1.03 PlyA +   8074   8079    6                               1.05

 2.05 PlyA -   8582   8577    6                               1.05
 2.04 Term -  26688  26371  318  0  0   90   38   203 0.812   9.40
 2.03 Intr -  29364  29266   99  0  0   79   56    56 0.545   0.89
 2.02 Intr -  38380  38207  174  1  0   17   89   131 0.732   5.31
 2.01 Init -  39898  39812   87  1  0   69   91    41 0.845   3.19
 2.00 Prom -  39984  39945   40                              -5.75

 3.02 PlyA -  40164  40159    6                               1.05
 3.01 Sngl -  56553  56047  507  0  0   70   43   257 0.776  15.19
 3.00 Prom -  57843  57804   40                              -6.45

 4.00 Prom +  60315  60354   40                              -4.95
 4.01 Init +  62233  62299   67  0  1   21  111    40 0.116   0.89
 4.02 Term +  73004  73407  404  0  2   64   48   404 0.293  28.33
 4.03 PlyA +  76479  76484    6                               1.05

 5.00 Prom +  83896  83935   40                              -7.15
 5.01 Init +  85048  85152  105  0  0   54   82    42 0.053   0.48
 5.02 Term +  91237  91383  147  0  0   23   47   220 0.530   8.32
 5.03 PlyA +  98655  98660    6                               1.05

 6.02 PlyA -  99980  99975    6                               1.05
 6.01 Sngl - 100873  99998  876  1  0   37   46   876 0.516  74.02
 6.00 Prom - 113512 113473   40                              -4.25

 7.02 PlyA - 114355 114350    6                               1.05
 7.01 Sngl - 115508 115104  405  2  0   32   37   320 0.931  17.34
 7.00 Prom - 141756 141717   40                              -3.25

 8.00 Prom + 149223 149262   40                              -5.85
 8.01 Init + 149520 149605   86  2  2   51   39   107 0.107   2.44
 8.02 Intr + 166430 166595  166  2  1   90   47   149 0.028  10.04
 8.03 Term + 174193 174261   69  0  0   43   36   156 0.216   2.86
 8.04 PlyA + 174268 174273    6                               1.05

 9.04 PlyA - 174436 174431    6                               1.05
 9.03 Term - 175874 175588  287  0  2   22   36   225 0.228   5.28
 9.02 Intr - 183794 183733   62  1  2  102   62    21 0.017  -1.64
 9.01 Init - 199484 199468   17  2  2  102   83    39 0.345   4.53

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 167210 167447  238  1  1   74   81   165 0.828  12.62


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815575r:40834985_41035832|GENSCAN_predicted_peptide_1|345_aa
MNTNEAESRNSNFATVVAGSEDWANAIEFVPGQPYCGRTVPSCTEAPLQGSVTKEESEEE
QTAVETKKQLCPYAAVGQCRYGENCVYLHGDLCDMCGLQVLHPMDAAQRSQHIQACIEAH
EKDMEFSFAVQRSKDKVCGICMEVVYEKANPNEHRFGILSNCNHTFCLKCIRKWRSAKEF
ESRIVKSCPQCRITSNFVIPSEYWVEEKEEKQKLIQKYKEAMSNKACKYFDEGRGSCPFG
ENCFYKHMYPDGRREEPQRQQVGTSSRNPGQQRNHFWEFFEEGANSNPFDDEEEAVTFEL
DDSTQTRDSRLNWSCGPHSEADSVHKDHFPYLYDCTSNQSAVPIP

>gi568815575r:40834985_41035832|GENSCAN_predicted_CDS_1|1038_bp
atgaatacaaacgaagctgagtcaagaaattcaaattttgcaactgtagtagcaggttca
gaggactgggcgaatgccattgagtttgttcctgggcaaccctactgtggccgtactgtg
ccttcctgcactgaagcacccctgcagggctcagtgaccaaggaagaatcagaggaagag
caaaccgccgtggaaacaaagaagcagctgtgcccctatgctgcagtgggacagtgccga
tatggggagaactgtgtgtatctccacggagatttatgtgacatgtgtgggctgcaggtc
ctgcatccgatggatgctgcccagagatcacagcatatacaagcgtgcattgaagcccat
gagaaagacatggagttctcatttgctgtgcagcgcagcaaggacaaggtgtgtgggatc
tgcatggaggtggtctatgagaaagccaaccccaacgagcaccgcttcgggatcctctcc
aactgcaaccacaccttctgtctcaagtgcattcgcaagtggaggagtgctaaggaattt
gagagcaggatcgtcaagtcctgcccacaatgccgaatcacatctaactttgtcattcca
agtgagtactgggtggaggagaaagaagagaagcagaaactcattcagaaatacaaggag
gcaatgagcaacaaggcatgcaagtattttgatgaaggacgtgggagctgcccatttgga
gagaactgtttttacaagcatatgtaccctgatggccgtagagaggagccacagagacag
caagtgggaacatcaagcagaaacccaggccaacaaaggaaccacttctgggaattcttt
gaggaaggagcgaacagcaacccctttgacgatgaagaagaggctgtcacctttgagctg
gatgactccactcagacccgagactcaagactcaactggtcctgtggcccccactcagaa
gcagactcagtgcacaaggaccattttccatacctctatgattgcacctccaaccaatca
gcagtacccattccctaa

>gi568815575r:40834985_41035832|GENSCAN_predicted_peptide_2|225_aa
MDLPNAVLHQYKRHPKGVCSDLQRLTLQKEWDFRVIGVVSVKATTVLSVSKEDFLKKVWI
RASTPTLSHQPKNQKPKGVWILEKHCMDSAESPHQQEGPHQIQPLTRYSPLTLNFSTSIT
AQKPAKEEWLQGMGLRHPLRACRPGLPQDSSAPHTLAQCFLAPPAMAQAAPGADRPTTQK
DTSFKPWQHPHGANSSGVQKARAAEPWQPPCRFERMSLKAWGPRQ

>gi568815575r:40834985_41035832|GENSCAN_predicted_CDS_2|678_bp
atggaccttcccaatgctgttttgcaccaatacaagagacatccaaaaggagtgtgctca
gatctacagaggctgactttacaaaaggagtgggacttcagagttataggggtggtgtct
gtaaaagctacaacagttttaagtgtttccaaagaggatttcttaaagaaagtgtggatt
cgagcctctactcccactctctcacatcagcccaagaaccagaagccaaaaggggtgtgg
attttagagaaacactgtatggactctgcagagagtccccaccagcaagaaggccctcac
cagatacagccccttaccagatacagccccttgaccctgaacttctccacctccataact
gcccagaagcctgcgaaggaagaatggcttcaggggatgggcctgaggcaccctctacgg
gcttgccgcccagggctgcctcaagactcttctgctccccacactctggcacagtgcttc
ttggcccccccagccatggctcaagcagccccaggtgcagatcgacccactacccaaaaa
gatacaagttttaagccttggcagcatccacatggtgctaattcttcaggcgttcagaaa
gcaagagctgcggagccttggcagcctccatgcagatttgaaagaatgtcactgaaagcc
tgggggcccaggcaatga

>gi568815575r:40834985_41035832|GENSCAN_predicted_peptide_3|168_aa
MSLYPSLENLKVDKVIGAQTTFSTNSANPAILSEASAPISQNGNLYPKLYPELSQYMGLS
LNEEEICANVAMVSGAPIQGQLVARPSSMNYMVAPVTGNDVGIHRAEIKQGICEVILCKD
HNGKIGLRLKSIDNGIFVQLVQANSPASLVGLRIEDQVLQINSENCAG

>gi568815575r:40834985_41035832|GENSCAN_predicted_CDS_3|507_bp
atgtctctctatccatctcttgaaaacttgaaggtagacaaagtaattggggctcaaact
actttttctacaaactctgccaatccagcaattttgtcagaagcttctgctcccatctct
caaaatggaaatctctatcccaaattatatccagagctctctcaatacatgggcctgagt
ttaaatgaagaagaaatatgtgcaaatgtggccatggtttctggtgcaccaattcagggg
cagttggtagcaagaccttccagtatgaactatatggtggctcctgtaactggtaatgat
gttggaattcacagagcagaaattaagcaagggatttgtgaagtcattttgtgtaaggat
cacaatggaaaaattggactcaggcttaaatcaatagataatggtatatttgttcagcta
gtccaggctaattctccagcctcattggttggtctgagaattgaggaccaagtactccag
attaatagtgaaaactgtgcagggtag

>gi568815575r:40834985_41035832|GENSCAN_predicted_peptide_4|156_aa
MTLPFVGTADEQRAYNPGRTGPAALRPLVKLKIVKKRTKKFILYQSDWYVKIKPNWQKPR
GIDNRVCRRFKGQILKPIVGYGSNKKTKHMLPNGFRKFLVHDINELEVLMMCNKSYCAKI
AHNVSSKNCKAIVERAAQLAIRVNNLNAILRSKENE

>gi568815575r:40834985_41035832|GENSCAN_predicted_CDS_4|471_bp
atgacactgccttttgtgggcactgcagatgaacagagagcctacaacccaggcagaaca
ggaccagctgccctcagaccccttgtgaaactcaagattgtcaaaaagagaaccaagaag
ttcatcctgtaccagtcagactggtatgtcaaaatcaagcctaactggcagaaacccaga
ggtattgacaatagggtttgtagaaggttcaagggccagatcttgaagcccatcgttggt
tatgggagcaacaaaaaaacaaagcacatgctgcccaatggtttccggaaattcctggtc
catgacatcaatgagctggaagtgctgatgatgtgcaacaaatcttactgtgctaagatc
gctcacaatgtttcctccaagaactgcaaggccatcgtggaaagagcagcccagctggcc
atcagagtcaacaacctcaatgccatactgcgcagcaaagaaaatgaatag

>gi568815575r:40834985_41035832|GENSCAN_predicted_peptide_5|83_aa
MIDFARPALWKAEGTVLSSEQQNILLVQNSLEPLKAGPSGGIPEEGIVIIGDDSSMNVID
LEDLPVGQDVEVEDCDIDDSDPV

>gi568815575r:40834985_41035832|GENSCAN_predicted_CDS_5|252_bp
atgattgattttgctagaccagctctgtggaaagcagaagggacagtgctgagttctgaa
caacaaaacattttgttagttcagaattccttggagcctctcaaggcaggtccttcagga
ggtatcccagaagaaggcattgttatcataggagatgacagctccatgaatgttattgac
cttgaagatcttccagtgggacaagatgtggaagtggaagactgtgatattgatgattct
gaccctgtgtag

>gi568815575r:40834985_41035832|GENSCAN_predicted_peptide_6|291_aa
MTPVQRGGSGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEWMP
VTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFCLGASLKDEVLKIMPVQKQIRAGQRT
RFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWRNKIGKPHTVPC
KVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFD
AISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT

>gi568815575r:40834985_41035832|GENSCAN_predicted_CDS_6|876_bp
atgacgccggtgcagcgaggagggtccggaggccctggtggccctgggatggggaaccgc
ggtggcttccgcggaggtttcggcagtggcatccggggccggggtcgcggccgtggacgg
ggccggggccgaggccgcggagctcgcggaggcaaggccgaggataaggagtggatgccc
gtcaccaagttgggccgcttggtcaaggacatgaagatcaagtccctggaggagatatat
ctcttctccctgcccattaaggaatcagagatcattgacttttgcttgggggcctctctc
aaggatgaggttttgaagattatgccagtgcagaagcagatccgtgccggccagcgcacc
aggttcaaggcgtttgttgctatcggggactacaatggccacgtcggtctgggtgttaag
tgttccaaggaggtggccaccgccatccgtggggccatcatcctggccaagctctccatt
gtccccgtgcgcagaggctactggaggaacaagatcggcaagccccacaccgtcccttgc
aaggtgacaggccgctgcggctctgtgctggtgcgcctcatccctgcacccaggggcact
ggcatcgtctccgcacctgtgcctaagaagctgcttatgatggctggtatcgatgactgc
tacacctcagcccggggctgcactgccaccctgggcaacttcgccaaggccacctttgat
gccatttctaagacctacagctacctgacccccgacctctggaaggagactgtatttacc
aagtctccctatcaggaattcactgaccacctcgtcaagacccacaccagagtctccgtg
cagcggactcaggctccagctgtggctacaacatag

>gi568815575r:40834985_41035832|GENSCAN_predicted_peptide_7|134_aa
MSREKPAAGAEPSWRTPTRAVLRGNTGLEPPNNVPTGALRRRAVRGGPPSSRPQDGRSTG
SSHHAPGKVVGTQCQPMRAAVWAEPWKATGAELPKVLGAHPLHQCALDVRHGVKGDYFEA
LTAALLGFRLVWGL

>gi568815575r:40834985_41035832|GENSCAN_predicted_CDS_7|405_bp
atgtccagagagaagcctgctgcaggggcagagccctcatggagaacccccactagggca
gtgctgaggggaaatacggggttggagcctccaaacaacgtccccactggggcacttcgt
agaagagctgtaagaggagggccaccatcctccagaccccaggatggtagatccactggc
agctcgcaccatgcacctggaaaagtcgtaggtactcaatgccagcccatgagagcagct
gtgtgggctgagccctggaaagccacaggggcagagctgcccaaggttttgggagcccac
cccttgcatcagtgtgccctggatgtgaggcatggagtcaaaggagattattttgaagct
ttaacagctgccctgctgggtttcagacttgtgtggggcctgtag

>gi568815575r:40834985_41035832|GENSCAN_predicted_peptide_8|106_aa
MEAEYGIIDIGDLEEGGEGGVDDEKLLKGQGTVMHYPDSPSVKDFLPNSKSVVSRQPSAV
IPSRSASAAEGSPCPLTDQGKGLKANNNDDDDDVDDDDDSVLFTLC

>gi568815575r:40834985_41035832|GENSCAN_predicted_CDS_8|321_bp
atggaagcagagtatggaataatagacattggagacttggaagagggaggggaaggagga
gtggatgatgagaaattacttaaggggcagggcactgtgatgcactacccagattcccct
tcagtgaaggacttcttgcccaactccaagagtgtggtcagcagacagccctcagctgtc
atcccctccaggtctgcctcagctgcagagggcagcccatgcccactgactgatcaaggc
aagggtctaaaggcaaataataatgatgatgatgatgatgttgatgatgatgatgatagt
gtcctcttcactctttgttaa

>gi568815575r:40834985_41035832|GENSCAN_predicted_peptide_9|121_aa
MSGKFYCFLAKQVFSMSPFLWSLKTIAESVSIVTGFSQGNRATVSILGIKPFTAVGRAGE
VNVWKEESEDQRVTSRCRKHWCSWTNQSLQENSRSQSTSSHRSRAAEGEFVERFMGAVAS
T

>gi568815575r:40834985_41035832|GENSCAN_predicted_CDS_9|366_bp
atgtccggcaaattttattgcttcctcgcaaagcaagttttctcaatgtccccttttctg
tggtccctgaagacaattgcagaatctgtaagtatcgtaacaggattcagccagggaaac
agagccactgtgagtattctaggaataaaaccgttcacagctgtgggaagagctggggaa
gtgaatgtctggaaggaggagtcagaagatcagagagtcactagccgttgccggaagcac
tggtgcagttggacaaatcagagcttgcaggaaaattccagaagccaaagcacatctagc
caccgaagcagggccgcggagggggagttcgtggagaggtttatgggagctgtggcctct
acgtag