FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB3429, 192 aa 1>>>pF1KB3429 192 - 192 aa - 192 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7636+/-0.000393; mu= 15.4592+/- 0.024 mean_var=54.0397+/-10.810, 0's: 0 Z-trim(110.4): 40 B-trim: 998 in 1/54 Lambda= 0.174469 statistics sampled from 18681 (18705) to 18681 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.6), E-opt: 0.2 (0.219), width: 16 Scan time: 5.390 The best scores are: opt bits E(85289) NP_001020092 (OMIM: 603686) 60S ribosomal protein ( 192) 1234 318.6 3.9e-87 NP_000652 (OMIM: 603686) 60S ribosomal protein L9 ( 192) 1234 318.6 3.9e-87 >>NP_001020092 (OMIM: 603686) 60S ribosomal protein L9 [ (192 aa) initn: 1234 init1: 1234 opt: 1234 Z-score: 1685.4 bits: 318.6 E(85289): 3.9e-87 Smith-Waterman score: 1234; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192) 10 20 30 40 50 60 pF1KB3 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB3 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 130 140 150 160 170 180 190 pF1KB3 VSEKGTVQQADE :::::::::::: NP_001 VSEKGTVQQADE 190 >>NP_000652 (OMIM: 603686) 60S ribosomal protein L9 [Hom (192 aa) initn: 1234 init1: 1234 opt: 1234 Z-score: 1685.4 bits: 318.6 E(85289): 3.9e-87 Smith-Waterman score: 1234; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192) 10 20 30 40 50 60 pF1KB3 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB3 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 130 140 150 160 170 180 190 pF1KB3 VSEKGTVQQADE :::::::::::: NP_000 VSEKGTVQQADE 190 192 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 05:00:37 2016 done: Sat Nov 5 05:00:38 2016 Total Scan time: 5.390 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]