FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB3429, 192 aa 1>>>pF1KB3429 192 - 192 aa - 192 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9713+/-0.000891; mu= 13.9974+/- 0.053 mean_var=51.2184+/- 9.862, 0's: 0 Z-trim(103.7): 24 B-trim: 0 in 0/50 Lambda= 0.179210 statistics sampled from 7529 (7534) to 7529 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.231), width: 16 Scan time: 1.840 The best scores are: opt bits E(32554) CCDS3452.1 RPL9 gene_id:6133|Hs108|chr4 ( 192) 1234 326.8 5.1e-90 >>CCDS3452.1 RPL9 gene_id:6133|Hs108|chr4 (192 aa) initn: 1234 init1: 1234 opt: 1234 Z-score: 1729.6 bits: 326.8 E(32554): 5.1e-90 Smith-Waterman score: 1234; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192) 10 20 30 40 50 60 pF1KB3 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB3 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 130 140 150 160 170 180 190 pF1KB3 VSEKGTVQQADE :::::::::::: CCDS34 VSEKGTVQQADE 190 192 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 05:00:37 2016 done: Sat Nov 5 05:00:37 2016 Total Scan time: 1.840 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]