Result of FASTA (ccds) for pF1KB3428
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3428, 423 aa
  1>>>pF1KB3428 423 - 423 aa - 423 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8399+/-0.000886; mu= 14.6033+/- 0.053
 mean_var=73.6545+/-14.903, 0's: 0 Z-trim(105.7): 15  B-trim: 0 in 0/52
 Lambda= 0.149443
 statistics sampled from 8559 (8564) to 8559 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.263), width:  16
 Scan time:  2.690

The best scores are:                                      opt bits E(32554)
CCDS10272.1 MPI gene_id:4351|Hs108|chr15           ( 423) 2807 614.6 5.5e-176
CCDS81908.1 MPI gene_id:4351|Hs108|chr15           ( 403) 2661 583.1 1.6e-166
CCDS73758.1 MPI gene_id:4351|Hs108|chr15           ( 373) 2467 541.3 5.8e-154
CCDS73756.1 MPI gene_id:4351|Hs108|chr15           ( 287) 1871 412.8 2.2e-115
CCDS73757.1 MPI gene_id:4351|Hs108|chr15           ( 362) 1327 295.5 5.5e-80


>>CCDS10272.1 MPI gene_id:4351|Hs108|chr15                (423 aa)
 initn: 2807 init1: 2807 opt: 2807  Z-score: 3273.0  bits: 614.6 E(32554): 5.5e-176
Smith-Waterman score: 2807; 100.0% identity (100.0% similar) in 423 aa overlap (1-423:1-423)

               10        20        30        40        50        60
pF1KB3 MAAPRVFPLSCAVQQYAWGKMGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAAPRVFPLSCAVQQYAWGKMGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 ILDNRISQKTLSQWIAENQDSLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ILDNRISQKTLSQWIAENQDSLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 QTMSHDSQAVASSLQSCFSHLMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QTMSHDSQAVASSLQSCFSHLMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 KFIDVPTLCEMLSYTPSSSKDRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KFIDVPTLCEMLSYTPSSSKDRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 VLALDSASILLMVQGTVIASTPTTQTPIPLQRGGVLFIGANESVSLKLTEPKDLLIFRAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VLALDSASILLMVQGTVIASTPTTQTPIPLQRGGVLFIGANESVSLKLTEPKDLLIFRAC
              370       380       390       400       410       420

          
pF1KB3 CLL
       :::
CCDS10 CLL
          

>>CCDS81908.1 MPI gene_id:4351|Hs108|chr15                (403 aa)
 initn: 2661 init1: 2661 opt: 2661  Z-score: 3103.2  bits: 583.1 E(32554): 1.6e-166
Smith-Waterman score: 2661; 100.0% identity (100.0% similar) in 403 aa overlap (21-423:1-403)

               10        20        30        40        50        60
pF1KB3 MAAPRVFPLSCAVQQYAWGKMGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAK
                           ::::::::::::::::::::::::::::::::::::::::
CCDS81                     MGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAK
                                   10        20        30        40

               70        80        90       100       110       120
pF1KB3 ILDNRISQKTLSQWIAENQDSLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ILDNRISQKTLSQWIAENQDSLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEK
               50        60        70        80        90       100

              130       140       150       160       170       180
pF1KB3 LHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLK
              110       120       130       140       150       160

              190       200       210       220       230       240
pF1KB3 QTMSHDSQAVASSLQSCFSHLMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QTMSHDSQAVASSLQSCFSHLMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQ
              170       180       190       200       210       220

              250       260       270       280       290       300
pF1KB3 LHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTP
              230       240       250       260       270       280

              310       320       330       340       350       360
pF1KB3 KFIDVPTLCEMLSYTPSSSKDRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KFIDVPTLCEMLSYTPSSSKDRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYK
              290       300       310       320       330       340

              370       380       390       400       410       420
pF1KB3 VLALDSASILLMVQGTVIASTPTTQTPIPLQRGGVLFIGANESVSLKLTEPKDLLIFRAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VLALDSASILLMVQGTVIASTPTTQTPIPLQRGGVLFIGANESVSLKLTEPKDLLIFRAC
              350       360       370       380       390       400

          
pF1KB3 CLL
       :::
CCDS81 CLL
          

>>CCDS73758.1 MPI gene_id:4351|Hs108|chr15                (373 aa)
 initn: 2467 init1: 2467 opt: 2467  Z-score: 2877.6  bits: 541.3 E(32554): 5.8e-154
Smith-Waterman score: 2467; 100.0% identity (100.0% similar) in 373 aa overlap (51-423:1-373)

               30        40        50        60        70        80
pF1KB3 MGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAKILDNRISQKTLSQWIAENQD
                                     ::::::::::::::::::::::::::::::
CCDS73                               MGTHPRGDAKILDNRISQKTLSQWIAENQD
                                             10        20        30

               90       100       110       120       130       140
pF1KB3 SLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEKLHLQAPQHYPDANHKPEMAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEKLHLQAPQHYPDANHKPEMAI
               40        50        60        70        80        90

              150       160       170       180       190       200
pF1KB3 ALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLKQTMSHDSQAVASSLQSCFSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLKQTMSHDSQAVASSLQSCFSH
              100       110       120       130       140       150

              210       220       230       240       250       260
pF1KB3 LMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQLHQQYPGDIGCFAIYFLNLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQLHQQYPGDIGCFAIYFLNLL
              160       170       180       190       200       210

              270       280       290       300       310       320
pF1KB3 TLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTPKFIDVPTLCEMLSYTPSSSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTPKFIDVPTLCEMLSYTPSSSK
              220       230       240       250       260       270

              330       340       350       360       370       380
pF1KB3 DRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYKVLALDSASILLMVQGTVIAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYKVLALDSASILLMVQGTVIAS
              280       290       300       310       320       330

              390       400       410       420   
pF1KB3 TPTTQTPIPLQRGGVLFIGANESVSLKLTEPKDLLIFRACCLL
       :::::::::::::::::::::::::::::::::::::::::::
CCDS73 TPTTQTPIPLQRGGVLFIGANESVSLKLTEPKDLLIFRACCLL
              340       350       360       370   

>>CCDS73756.1 MPI gene_id:4351|Hs108|chr15                (287 aa)
 initn: 1869 init1: 1869 opt: 1871  Z-score: 2185.0  bits: 412.8 E(32554): 2.2e-115
Smith-Waterman score: 1871; 98.6% identity (98.6% similar) in 286 aa overlap (1-286:1-286)

               10        20        30        40        50        60
pF1KB3 MAAPRVFPLSCAVQQYAWGKMGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAAPRVFPLSCAVQQYAWGKMGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 ILDNRISQKTLSQWIAENQDSLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ILDNRISQKTLSQWIAENQDSLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 QTMSHDSQAVASSLQSCFSHLMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QTMSHDSQAVASSLQSCFSHLMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTP
       :::::::::::::::::::::::::::::::::::::::::    :              
CCDS73 LHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGGPWLCH             
              250       260       270       280                    

              310       320       330       340       350       360
pF1KB3 KFIDVPTLCEMLSYTPSSSKDRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYK

>>CCDS73757.1 MPI gene_id:4351|Hs108|chr15                (362 aa)
 initn: 1327 init1: 1327 opt: 1327  Z-score: 1549.5  bits: 295.5 E(32554): 5.5e-80
Smith-Waterman score: 2287; 85.3% identity (85.6% similar) in 423 aa overlap (1-423:1-362)

               10        20        30        40        50        60
pF1KB3 MAAPRVFPLSCAVQQYAWGKMGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAAPRVFPLSCAVQQYAWGKMGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 ILDNRISQKTLSQWIAENQDSLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ILDNRISQKTLSQWIAENQDSLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLK
       ::::::::::::::::::::::::::::::::::::::::::                  
CCDS73 LHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLK------------------
              130       140       150       160                    

              190       200       210       220       230       240
pF1KB3 QTMSHDSQAVASSLQSCFSHLMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQ
                                                  .::::::::::::::::
CCDS73 -------------------------------------------TAAGNNMEDIFGELLLQ
                                                       170         

              250       260       270       280       290       300
pF1KB3 LHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTP
     180       190       200       210       220       230         

              310       320       330       340       350       360
pF1KB3 KFIDVPTLCEMLSYTPSSSKDRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KFIDVPTLCEMLSYTPSSSKDRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYK
     240       250       260       270       280       290         

              370       380       390       400       410       420
pF1KB3 VLALDSASILLMVQGTVIASTPTTQTPIPLQRGGVLFIGANESVSLKLTEPKDLLIFRAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VLALDSASILLMVQGTVIASTPTTQTPIPLQRGGVLFIGANESVSLKLTEPKDLLIFRAC
     300       310       320       330       340       350         

          
pF1KB3 CLL
       :::
CCDS73 CLL
     360  




423 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:59:52 2016 done: Sat Nov  5 04:59:52 2016
 Total Scan time:  2.690 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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