GENSCAN 1.0	Date run:  5-Nov-116	Time: 04:59:09

Sequence gi568815589r:19276296_19479620 : 203325 bp : 40.34% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  10474  10726  253  1  1   77   95   252 0.998  21.31
 1.02 Intr +  12301  12370   70  0  1   82  119    42 0.867   4.54
 1.03 Intr +  14565  14581   17  1  2   89   95    24 0.465  -2.46
 1.04 Intr +  19713  19951  239  2  2   80   53   138 0.852   4.99
 1.05 Intr +  23892  24036  145  0  1   93   87    34 0.779   3.16
 1.06 Intr +  29057  29232  176  1  2   78   75    25 0.069  -1.98
 1.07 Intr +  40122  40222  101  0  2   59   95    40 0.215   0.63
 1.08 Intr +  40326  40544  219  1  0   70   96   238 0.908  20.15
 1.09 Intr +  48067  48212  146  2  2  107   93    99 0.984  11.38
 1.10 Intr +  49644  49679   36  2  0   91   95    48 0.909   3.34
 1.11 Intr +  58682  58810  129  1  0  113  115    27 0.986   7.87
 1.12 Intr +  59975  60119  145  1  1   92   90   111 0.999  10.63
 1.13 Intr +  60391  60537  147  2  0   68   79   140 0.930  10.39
 1.14 Intr +  64697  64819  123  0  0   84   37   148 0.997   8.94
 1.15 Intr +  66338  66484  147  0  0   53  105    99 0.989   7.39
 1.16 Intr +  69626  70791 1166  0  2  107   94   624 0.977  52.43
 1.17 Intr +  74407  74584  178  0  1   27   80   131 0.975   4.77
 1.18 Intr +  75778  75887  110  2  2   87   83    20 0.732   0.48
 1.19 Intr +  76195  76370  176  0  2  109   96    60 0.995   6.72
 1.20 Intr +  80677  80859  183  1  0   86   64   181 0.992  13.48
 1.21 Intr +  81733  81865  133  1  1   43   68   126 0.708   5.83
 1.22 Intr +  83949  84194  246  2  0   99   91   128 0.985  10.93
 1.23 Intr +  85575  85668   94  2  1   93   83    24 0.740   1.02
 1.24 Term +  92934  93061  128  1  2   55   49    91 0.662  -0.64
 1.25 PlyA +  93865  93870    6                               1.05

 2.07 PlyA -  94277  94272    6                               1.05
 2.06 Term - 100093  99998   96  1  0   84   44   145 0.997   6.69
 2.05 Intr - 100356 100199  158  1  2   69   96   214 0.983  19.11
 2.04 Intr - 102219 102073  147  1  0   47   97   176 0.995  13.69
 2.03 Intr - 102623 102413  211  2  1   99  100   188 0.997  18.66
 2.02 Intr - 103323 103192  132  0  0   87   93   255 0.723  25.82
 2.01 Init - 103900 103895    6  1  0   74  100    10 0.565   1.16
 2.00 Prom - 107921 107882   40                              -5.75

 3.00 Prom + 112652 112691   40                              -2.35
 3.01 Init + 118351 118563  213  0  0   65   48   114 0.147   3.89
 3.02 Intr + 124102 124171   70  0  1  118  101    37 0.308   5.84
 3.03 Term + 126425 126558  134  0  2   92   43    95 0.297   2.67
 3.04 PlyA + 127459 127464    6                               1.05

 4.02 PlyA - 127572 127567    6                               1.05
 4.01 Sngl - 133089 132685  405  0  0   63   48   331 0.919  22.63
 4.00 Prom - 147023 146984   40                              -6.35

 5.00 Prom + 148602 148641   40                              -4.45
 5.01 Init + 169996 170123  128  0  2   84   91   224 0.999  19.98
 5.02 Term + 174155 174341  187  2  1  131   45   149 0.812  10.88
 5.03 PlyA + 177279 177284    6                               1.05

 6.07 PlyA - 177604 177599    6                               1.05
 6.06 Term - 182359 182251  109  0  1  125   38    99 0.607   5.60
 6.05 Intr - 185062 184656  407  1  2   74   24   393 0.469  23.72
 6.04 Intr - 186538 186332  207  1  0   47   44   138 0.862   3.65
 6.03 Intr - 188198 188113   86  0  2   45   69    99 0.189   2.32
 6.02 Intr - 189515 189347  169  2  1   58   58    76 0.040   0.20
 6.01 Intr - 195774 195549  226  2  1   83   89   136 0.392  10.26

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr + 147567 147681  115  2  1  117  106    15 0.877   5.30
S.002 Term - 166167 166042  126  0  0  109   48    82 0.953   3.60


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r:19276296_19479620|GENSCAN_predicted_peptide_1|1502_aa
XVLYEGKERLIPGCEVILATPYGRCANVNNSSTTSQRIFITYRRAPPVRPQNSLAVTDIC
VIVTSKGETPPHTFCKVDKNLNCGMWGSSVFLCYKKSVPASNAIAYKAGSSAKKVYGAAI
QFYEPYSRELLSEKQLMHLGLLTPVERKMVSKSINTNKCICLLSHWPFFEAFRKFLMFIY
KLSVSGPHPLPIENGANFSTLLMNLGPENCATLLLFVLLESKILLHSLRPAVLTGVAEAV
VAMIFPFQWQCPYIPLCPLSLAAVLSAPLPFIVGVDSRYFDLHDPPQDVVCIDLDTNMLY
VSDEKKNMNWKQLPKKPCKNLLSTLKKLYPQLSSVHQKTQEGSAIDMTPIEADFSWQKKM
TQLEMEIQEAFLRFMASILKGYRTYLRPITEAPSNKATAADSLFDRQGFLKSRDRAYAKF
YTLLSKTQIFIRFIEECSFVSDKDTGLAFFDDCIEKLFPDKGTEKTDKVCYRVVMQLCGL
WGHPVLAVRVLFEMKTARIKPNAITYGYYNKVVLESPWPSSTRSGIFLWTKVRNVVRGLA
QFRQPLKKTVQRSQVSSISALQNVTGGSDGDTVSHGSVDSSNDANNGEHTVFVRDLIRLE
SIDNHSSTGGQSDQGYGSKDELIKDDAEIHVPEEQAARELITKTKMQTEEVCDASAIVAK
HSQPSPEPHSPTEPPAWGSSIVKVPSGIFDVNSRKSSTGSISNVLFSTQDPVEDAVFGEA
TNLKKNGDRGEKRQKHFPERSCSFSSESRAGMLLKKSSLDSNSSEMAIMMGADAKILTAA
LTCPKTSLLHIARTHSFENVSCHLPDSRTCMSESTWNPEHRSSPVPEMLEESQELLEPVV
DDVPKTTATVDTYESLLSDSNSNQSRDLKTVSKDLRNKRSSLYGIAKVVQREDVETGLDP
LSLLATECTGGKTPDSEDKLFSPVIARNLADEIESYMNLKSPLGSKSSSMELHREENRES
GMTTAFIHALERRSSLPLDHGSPAQENPESEKSSPAVSRSKTFTGRFKQQTPSRTHKERS
TSLSALVRSSPHGSLGSVVNSLSGLKLDNILSGPKIDVLKSGMKQAATVASKMWVAVASA
YSYSDDEEETNRDYSFPAGLEDHILGENISPNTSISGLVPSELTQSNTSLGSSSSSGDVG
KLHYPTGEVPFPRGMKGQDFEKSDHGSSQNTSMSSIYQNCAMEVLMSSCSQCRACGALVY
DEEIMAGWTADDSNLNTACPFCKSNFLPLLNIEFKDLRGSASFFLKPSTSGDSLQSGSIP
LANESLEHKPVSSLAEPDLINFMDFPKHNQIITEETGSAVEPSLSKRNVSLTRSHSVGGP
LQNIDFTQRPFHGISTVSLPNSLQEVVDPLGKRPNPPPVSVPYLSPLVLRKELESLLENE
GDQVIHTSSFINQHPIIFWNLVWYFRRLDLPSNLPGLILTSEHCNEGVQDSKLVYIQLLW
DNINLHQEPREPLYVSWRNFRIQVPSVVPAFMAAGVQAITFQPQAVSHHILEEKGRVTGL
PV

>gi568815589r:19276296_19479620|GENSCAN_predicted_CDS_1|4509_bp
nnagttctatatgaagggaaagaacggcttattccaggatgtgaagtgatcctagccaca
ccctatggtcgctgtgccaatgtcaacaatagttcaactacttcacaaagaatctttatc
acttatcgaagggctcctccagttcgaccccagaattccttggctgtaactgatatctgt
gttattgtaaccagtaaaggagaaactcctcctcataccttctgcaaagttgacaaaaac
ttaaattgtggaatgtggggttccagcgtgtttctgtgttataagaagtctgtacctgct
tcaaatgcaatagcatataaggctggttcttcagccaaaaaggtatatggagctgccatt
cagttttatgaaccttactctcgggaacttctatcagagaaacagcttatgcacctgggc
ttgttgacgcctgtggagagaaaaatggtctccaaatccatcaatacaaacaaatgcatt
tgtttactctcacactggcctttttttgaagcttttaggaaatttcttatgtttatctac
aaactttctgtgtctggaccacatcctcttcccattgaaaatggagccaactttagcacc
ttgctaatgaatctgggtcctgagaattgtgcaacactgctgctctttgttttacttgag
agtaaaattctgctgcattctcttaggccagctgtcttgactggggtagctgaagctgtt
gtagctatgatctttccatttcagtggcaatgcccatatattcccctttgtcctctttca
ctggctgcagtgcttagtgcacctttaccatttatagttggagttgactcaaggtatttt
gatcttcatgacccaccacaagatgttgtttgcattgacttggatacgaacatgttatat
gtatcagatgaaaagaagaacatgaactggaagcaacttcccaaaaagccgtgcaaaaat
ctacttagcaccttaaagaaattgtatccccagctgtcttcagttcaccaaaaaactcaa
gaaggctcagcgattgacatgactccaattgaagcagatttctcctggcaaaagaagatg
acacagcttgagatggaaattcaagaggcatttttgcgctttatggcgtctattttaaaa
ggatatagaacatatctcagaccaatcacagaggctccttcaaataaagccacagctgct
gattcattgtttgaccgacagggatttttaaaaagtcgagatcgtgcctatgcaaaattc
tatacccttttatccaaaacacagatttttattcgtttcattgaagaatgcagttttgta
agtgataaagatactggattagcattttttgatgactgcatagaaaagttgtttcctgat
aaaggcacagagaaaacagataaggtgtgctatcgagtagtgatgcagctttgtggactt
tggggtcatcctgttttagcagtgagagtcttatttgaaatgaaaactgctaggataaag
cctaatgctattacttatggttattataataaggtagtcttggagagcccgtggcctagc
agtacccgcagtggtattttcttatggacgaaggtacggaatgtggtacgtggcttggca
cagtttaggcagccgcttaaaaagactgtgcaaaggtcacaggtctcctcaatatcagct
cttcaaaatgtcacaggtggaagtgatggggacacggtgagccacggtagtgtggatagt
tctaatgatgctaacaatggggagcacacagtcttcgtcagagatttaatcaggcttgag
tccattgataatcactctagcacaggtggtcagtctgaccaaggatacgggtctaaggat
gaacttataaaggatgatgcagaaattcatgtgcctgaagaacaggcagcaagagaattg
ataactaaaacaaaaatgcaaacagaagaggtgtgtgatgcctctgctattgtggcaaaa
cattcacaacctagtccagagcctcacagtcctactgaacctcctgcatggggcagcagt
attgtgaaagttccgtctggtatatttgatgtcaacagcaggaaaagtagcactggtagt
atatcaaatgtgctgttttctactcaagatccagttgaagatgcagtctttggcgaagct
actaatctcaagaagaatggtgatagaggagaaaaaagacaaaagcattttcctgagagg
agttgtagttttagttctgaaagtcgagcaggaatgttgcttaagaagagtagtttggat
tcgaattcaagtgaaatggctatcatgatgggagcagatgccaagattctcacagcagca
ttgacatgtcctaagacttctctacttcatattgcaagaacccatagctttgagaatgtt
agctgtcacctacctgatagtaggacttgtatgtctgaaagcacttggaatcctgagcac
agatcatctccggtgccagagatgcttgaggaaagccaagaactccttgagcctgtggtt
gatgacgtacctaaaactactgcaacagtagatacatatgagagtctactaagtgatagt
aacagtaatcagtccagagacttgaaaacagtatccaaagatctgaggaataagagaagt
agtttatatggtattgctaaggtggttcagagggaagatgttgaaactggactagatcct
ttgtctcttttagccactgaatgtacaggaggaaaaactcctgattctgaagataagttg
ttttctccagttattgcacgtaatctggctgatgaaatagaaagctatatgaacctaaaa
agtcccctaggtagtaaatcttctagtatggaattacacagagaggaaaacagagagtct
ggcatgactactgcatttattcatgctctagagaggagatcaagcctacctttagatcat
ggttcaccagcacaggaaaatcctgaaagtgaaaagagctcacctgcagtgtccaggtct
aaaacttttactgggcgtttcaagcagcaaaccccctctcgaactcataaagaacgttca
acttctttgtcagcactggtgcgttcttcgccacatggctcgttgggttctgtagtaaat
tctttgtcagggctaaagctggataatatactctcagggcccaagatagatgtcctgaaa
tctggtatgaaacaagcagcgacagtagccagtaagatgtgggtagctgttgcgtctgcc
tacagctactcagatgatgaggaagaaactaatagagactacagcttcccagctggccta
gaagaccatattttgggggagaatatatcgcctaacacaagtatctcagggttggtcccc
agtgaacttacccagagcaacacaagtcttggcagtagcagcagtagtggagatgtagga
aaactgcattatccaacaggtgaagttccatttccaagaggcatgaaagggcaagacttt
gaaaaatcagatcatggttcttctcaaaataccagcatgtctagcatctatcagaattgt
gcaatggaggttttgatgtccagttgttcacagtgtagagcttgtggagctttagtttat
gatgaagaaattatggctggatggacagcagatgactcaaatttgaatacagcttgtcca
ttctgtaaaagcaacttcttgcctcttctcaatatagaattcaaagatttgagaggttct
gcaagctttttcctgaaaccaagtacctctggtgacagtttacaaagtggaagcattcca
ttggcaaatgaatccttggagcacaaacctgtatccagtttagcagaacctgacttgatc
aactttatggacttcccaaaacataaccagatcataactgaagaaacaggctctgcagtt
gaaccaagtttatcaaagcgaaatgtgtctttgactcgaagtcacagtgttggaggccca
ttgcagaatattgactttacccagcgaccgtttcatggcatctcaacagttagtcttcca
aatagtctgcaggaagttgtggatcctttaggaaaaagacccaatcctccccctgtttct
gtgccctacttgagtcctctagtactccgtaaagaacttgaatctttgctagaaaatgaa
ggtgatcaggtgattcatacatcttctttcatcaatcaacatccaatcattttctggaac
ctcgtttggtatttcagacgtttggaccttcctagtaacttgccaggacttatcctcaca
tctgaacattgtaatgaaggtgtacaggatagcaaacttgtgtatattcagctgttatgg
gataatatcaaccttcatcaggaaccaagagaacctctgtatgtctcatggaggaatttt
aggatccaggttccttctgttgtacctgcttttatggctgctggagtacaagctatcaca
ttccagcctcaggcagtaagccaccatatattagaagagaaaggcagagtgacaggtctg
cctgtttga

>gi568815589r:19276296_19479620|GENSCAN_predicted_peptide_2|249_aa
MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG
FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKD
IPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLV
TPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAS
TSKSESSQK

>gi568815589r:19276296_19479620|GENSCAN_predicted_CDS_2|750_bp
atgaagctgaacatctccttcccagccactggctgccagaaactcattgaagtggacgat
gaacgcaaacttcgtactttctatgagaagcgtatggccacagaagttgctgctgacgct
ctgggtgaagaatggaagggttatgtggtccgaatcagtggtgggaacgacaaacaaggt
ttccccatgaagcagggtgtcttgacccatggccgtgtccgcctgctactgagtaagggg
cattcctgttacagaccaaggagaactggagaaagaaagagaaaatcagttcgtggttgc
attgtggatgcaaatctgagcgttctcaacttggttattgtaaaaaaaggagagaaggat
attcctggactgactgatactacagtgcctcgccgcctgggccccaaaagagctagcaga
atccgcaaacttttcaatctctctaaagaagatgatgtccgccagtatgttgtaagaaag
cccttaaataaagaaggtaagaaacctaggaccaaagcacccaagattcagcgtcttgtt
actccacgtgtcctgcagcacaaacggcggcgtattgctctgaagaagcagcgtaccaag
aaaaataaagaagaggctgcagaatatgctaaacttttggccaagagaatgaaggaggct
aaggagaagcgccaggaacaaattgcgaagagacgcagactttcctctctgcgagcttct
acttctaagtctgaatccagtcagaaataa

>gi568815589r:19276296_19479620|GENSCAN_predicted_peptide_3|138_aa
MSKRYAENFTEGVMQKATKHVQRYSTSLPIGETYIKTTMRYYYTTIRMAEIKNSDNTKCG
DVDKLGNHTLLVSLTAPAPCQPGPVSPHNSGFCKLLCLVKSCSSFNFSSEATSSAKRPMT
LSADLGPCPSASTYAPPF

>gi568815589r:19276296_19479620|GENSCAN_predicted_CDS_3|417_bp
atgagcaaaagatatgcagagaatttcactgaaggagttatgcagaaggctactaagcac
gtgcaaagatattcaacatcattacctattggggaaacgtatattaaaaccacaatgaga
tattattacacaactatcagaatggctgagataaaaaacagtgacaacaccaaatgtggg
gatgtggataaactaggaaatcatacgttgctggtctctctgactgctcctgctccttgt
cagccaggacctgtgtctcctcataactcaggcttctgtaaattgctctgcctggtaaaa
tcctgttcatcttttaacttcagttccgaggctacctcctctgcaaaacgtcccatgact
ctcagtgcagacttgggcccctgcccttctgcttccacatatgcacctccattttag

>gi568815589r:19276296_19479620|GENSCAN_predicted_peptide_4|134_aa
MGTGEEDRWRTERSAPRRGCGLTQPLERMPPDARRDPRPASRRCGAGTAPSRWPACLPRS
RAPHRVVELGDSRHDGVVVLAPVHLRATSLQLVPPVRGAHGHSGALEQLLAQLRRAQSCC
GGKTRRQPAAKAAL

>gi568815589r:19276296_19479620|GENSCAN_predicted_CDS_4|405_bp
atggggacaggagaggaggacagatggagaactgaaaggagcgcgccgaggagggggtgt
ggactgactcagcccctggagagaatgcccccagatgcgcgcagagacccacgtccagct
tccagacgctgcggcgcgggaacagccccctcccgctggcccgcctgccttccccgctcc
cgcgccccgcaccgtgttgtagaactcggcgatagcaggcacgatggtgtagttgtcctc
gcaccagtccacctccgagctaccagcctgcagctggtcccaccagtgcggggcgcccat
ggccactccggggcattggagcagctgctcgcgcagctgagaagagcccagagctgctgc
ggaggcaaaacgcggcgacagccagcggcgaaagcggctttatga

>gi568815589r:19276296_19479620|GENSCAN_predicted_peptide_5|104_aa
MRVFKLGLFSGLWWTLALFCWISDRAFCELLSSFNFPYLHCMWHILICLAAYLGCVCFAY
FDAASEIPEQGPVIKFWPNEKWAFIGVPYVSLLCANKKSSVKIT

>gi568815589r:19276296_19479620|GENSCAN_predicted_CDS_5|315_bp
atgcgtgtgtttaagctgggcctcttctcgggcctctggtggaccctggccctgttctgc
tggatcagtgaccgagctttctgcgagctgctgtcatccttcaacttcccctacctgcac
tgcatgtggcacatcctcatctgccttgctgcctacctgggctgtgtatgctttgcctac
tttgatgctgcctcagagattcctgagcaaggccctgtcatcaagttctggcccaatgag
aaatgggccttcattggtgtcccctatgtgtccctcctgtgtgccaacaagaaatcatca
gtcaagatcacgtga

>gi568815589r:19276296_19479620|GENSCAN_predicted_peptide_6|401_aa
XLQVCPQTCQLVWPPSFWWAAGPLVTPSDQGGSSSREREFLIFSPGDESNDTARPRTKEV
PREGVCEIFPGGRSPSLAGCSRGHRRKGGPWPFPRLNPGSSPPESACDPFNLVGRNLREE
AVQVTIQPLWKRRAVDRRAIICPAVWQPGDLSPGLVLAARQPWRQAQRPCERPGRTHKAL
RDSSEGDKGEMLKTRKTGKEGRDQIVEETSDHTQGLQSGLFCSKSNGEELEPRGPSRRRR
RRLDPRTRPAEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLV
PDVRDVNMSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMV
YASQETTVDSSPLRGFGRVSGLLPSPDLSCSIRPHNPLQAA

>gi568815589r:19276296_19479620|GENSCAN_predicted_CDS_6|1206_bp
nncctccaggtttgtccccagacctgccaactggtgtggccgccttccttttggtgggct
gcaggaccactggtgacacctagtgaccaaggcggcagtagcagccgagaacgagaattc
ctgattttctctcctggtgatgagagtaatgacactgcccgccccaggaccaaggaagtc
cccagggagggagtgtgtgagatttttccaggagggagatccccctcgctcgcaggctgc
agccgaggccacaggaggaaaggaggcccctggccctttcctcggttgaacccaggctct
tcacccccggagtcggcctgtgaccctttcaatttggtgggtagaaatctccgggaagag
gctgtacaagtcacaatacaacccctctggaaaagacgtgccgtggacagaagagccatc
atctgcccagcggtctggcagcctggagacctttcccctggcctagtgctcgctgcccgt
cagccatggagacaggcccaaaggccatgtgaaagaccaggaagaacacacaaagctctg
agagactcgagtgaaggggacaagggggagatgctcaaaaccagaaagactggaaaggaa
ggcagggaccagatcgtggaggagacttcagatcacactcagggtctccaatcaggtttg
ttttgttctaagagcaatggggaggaactggagccgcggggaccctcgcgccgtcgccgc
cgccgcctggatccccgcaccaggccagcggagaagaccttcaagcagcgccgcaccttc
caacaaagagtagatgtccgacttattcaagagcagcatccagccaaaagcccggtgata
acagaacgataccaaggtgagaagcagcttcctgtcctggataaaacgaagttccttgta
cctgacgttcgagacgtcaacatgagtgagctcatcaagataattagaaggcgcttacag
ctcaatgctaatcaagccttcctcctggtggtgaacggacatagcatggtgagcgtctcc
acaccagtctcagaggtgtatgagagtgagaaggatgaagatggattcctatacatggtc
tatgcctcccaggagaccactgttgattcctctccactacggggatttggcagagtcagt
ggccttctcccctccccagatctgagctgctccatccgtccccataaccctctgcaggca
gcataa