FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3113, 323 aa
  1>>>pF1KB3113 323 - 323 aa - 323 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2713+/-0.00102; mu= 10.4304+/- 0.060
 mean_var=118.7381+/-24.650, 0's: 0 Z-trim(107.5): 206  B-trim: 6 in 1/49
 Lambda= 0.117701
 statistics sampled from 9364 (9610) to 9364 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.295), width:  16
 Scan time:  2.450

The best scores are:                                      opt bits E(32554)
CCDS5180.1 PEX7 gene_id:5191|Hs108|chr6            ( 323) 2274 397.5 7.5e-111


>>CCDS5180.1 PEX7 gene_id:5191|Hs108|chr6                 (323 aa)
 initn: 2274 init1: 2274 opt: 2274  Z-score: 2103.6  bits: 397.5 E(32554): 7.5e-111
Smith-Waterman score: 2274; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323)

               10        20        30        40        50        60
pF1KB3 MSAVCGGAARMLRTPGRHGYAAEFSPYLPGRLACATAQHYGIAGCGTLLILDPDEAGLRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MSAVCGGAARMLRTPGRHGYAAEFSPYLPGRLACATAQHYGIAGCGTLLILDPDEAGLRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 FRSFDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQEVYSVDWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 FRSFDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQEVYSVDWS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 QTRGEQLVVSGSWDQTVKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFASASGDQTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 QTRGEQLVVSGSWDQTVKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFASASGDQTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 RIWDVKAAGVRIVIPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 RIWDVKAAGVRIVIPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 HTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTCGLDFSLQSPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 HTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTCGLDFSLQSPT
              250       260       270       280       290       300

              310       320   
pF1KB3 QVADCSWDETIKIYDPACLTIPA
       :::::::::::::::::::::::
CCDS51 QVADCSWDETIKIYDPACLTIPA
              310       320   




323 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:50:34 2016 done: Sat Nov  5 04:50:34 2016
 Total Scan time:  2.450 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]