GENSCAN 1.0	Date run:  5-Nov-116	Time: 04:39:43

Sequence gi568815590f:43003549_43222874 : 219326 bp : 43.42% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   4299   4381   83  0  2   53   68    91 0.862   2.88
 1.02 Intr +   6757   6857  101  2  2   74   84   111 0.995   9.13
 1.03 Intr +   9503   9607  105  1  0  116   53    81 0.976   7.81
 1.04 Intr +   9781   9852   72  0  0   95   95    42 0.942   5.20
 1.05 Intr +  14810  14946  137  1  2   93   75    48 0.353   3.37
 1.06 Term +  45743  45872  130  2  1   83   42    44 0.013  -3.05
 1.07 PlyA +  46022  46027    6                               1.05

 2.00 Prom +  46778  46817   40                              -1.36
 2.01 Init +  52565  52998  434  1  2   40   97   349 0.850  24.69
 2.02 Intr +  55544  55629   86  2  2   70  101    88 0.985   7.76
 2.03 Intr +  60553  60667  115  2  1   59  103   141 0.998  12.21
 2.04 Intr +  66007  66111  105  1  0   77  111   107 0.996  11.23
 2.05 Intr +  68633  68759  127  2  1   75   72    38 0.978   1.58
 2.06 Intr +  73668  73816  149  2  2   97   24   117 0.508   5.23
 2.07 Intr +  81162  81333  172  0  1   97   99   112 0.981  13.15
 2.08 Intr +  99980 100282  303  1  0  106   70   313 0.898  28.09
 2.09 Intr + 110282 110450  169  1  1   77   58   111 0.001   6.52
 2.10 Intr + 113831 113883   53  0  2   51   79    29 0.001  -3.07
 2.11 Term + 118559 119329  771  1  0  110   48   741 0.214  65.70
 2.12 PlyA + 122213 122218    6                               1.05

 3.00 Prom + 136145 136184   40                              -5.66
 3.01 Init + 136949 137066  118  1  1   82  105   311 0.975  30.56
 3.02 Intr + 143400 143515  116  1  2   74   60    67 0.864   2.67
 3.03 Intr + 155027 155163  137  1  2   99   58   103 0.769   7.77
 3.04 Intr + 155375 155496  122  2  2   67   50   113 0.929   5.54
 3.05 Intr + 157890 157959   70  1  1  123   94   -17 0.899   0.64
 3.06 Intr + 165625 165694   70  1  1   83   84    81 0.984   6.38
 3.07 Intr + 167258 167391  134  1  2   99    2    73 0.085  -0.76
 3.08 Intr + 168762 168838   77  0  2   84   95    22 0.134   1.66
 3.09 Intr + 178597 178712  116  2  2  117   89   136 0.932  16.77
 3.10 Term + 180257 180325   69  1  0   91   54    17 0.740  -3.46
 3.11 PlyA + 180539 180544    6                               1.05

 4.02 PlyA - 181336 181331    6                               1.05
 4.01 Sngl - 182527 181460 1068  1  0   43   39   286 0.809  16.35
 4.00 Prom - 184099 184060   40                              -3.56

 5.00 Prom + 186629 186668   40                              -3.66
 5.01 Init + 188580 188590   11  2  2   68   77    15 0.456  -2.19
 5.02 Intr + 188756 188882  127  2  1   64   68   180 0.854  14.28
 5.03 Intr + 190209 190295   87  2  0   66   68   163 0.997  12.27
 5.04 Intr + 191935 192180  246  0  0  -72   32   591 0.886  35.16
 5.05 Intr + 192882 192992  111  2  0  111   49    33 0.586   2.28
 5.06 Intr + 193400 193477   78  1  0   84   89    31 0.797   2.55
 5.07 Intr + 194124 194194   71  2  2  121   84    21 0.940   2.98
 5.08 Intr + 194292 194404  113  0  2   97  111    45 0.911   7.72
 5.09 Term + 195840 196021  182  1  2   84   45   243 0.999  17.37
 5.10 PlyA + 196977 196982    6                               1.05

 6.04 PlyA - 197969 197964    6                              -0.45
 6.03 Term - 200925 200738  188  1  2   72   47   203 0.932  12.25
 6.02 Intr - 203550 203348  203  2  2  131    2   103 0.737   4.93
 6.01 Init - 210609 210554   56  0  2   72   72    31 0.598   0.66
 6.00 Prom - 211796 211757   40                              -2.96

 7.02 PlyA - 212302 212297    6                               1.05
 7.01 Term - 216436 216354   83  2  2  110   43    89 0.805   4.46

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  81612  81734  123  2  0  100   41    30 0.901  -2.12
S.002 Intr -  90022  89925   98  0  2   84   88    86 0.905   7.85
S.003 Term - 110116 109964  153  1  0   48   37   196 0.886   8.42


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590f:43003549_43222874|GENSCAN_predicted_peptide_1|209_aa
XEKLHEANNELQKKRAIIEDLEPRFNNSSLKIEELQEALRKKEEEMKQMEERYKKYLEKA
KSVIRTLDPKQNQGAAPEIQALKNQLQERDRLFHSLEKEYEKTKSQREMEEKYIVSAWYN
MGMTLHKKAAEDRLASTGSGQSFLARQRQATSSRRSYPGHVQPATASHTGRLDPQMHQTL
PAQYLWTSAGNGLEDLQVGLLIHIPQIFI

>gi568815590f:43003549_43222874|GENSCAN_predicted_CDS_1|630_bp
nnagagaagctgcatgaggccaataatgaactacagaagaagagagccattattgaagat
ctcgagccaagatttaacaacagctccttaaaaattgaagaattacaagaagctttacga
aagaaagaggaagaaatgaagcaaatggaagaacgatacaaaaaatacttagagaaagcc
aaaagtgtcatccgtactttagatcctaaacagaatcaaggagcagcaccagaaatacaa
gctcttaaaaatcagctccaggaacgagaccgactgttccactcattagagaaagaatat
gagaaaacaaagagtcagagagagatggaagagaaatatattgttagtgcctggtacaat
atgggaatgaccctgcataaaaaggcagctgaagatagactggcaagcacaggctcaggg
cagtcatttctggcgaggcagaggcaagcgaccagcagcagaagatcatacccaggccac
gtgcagccggccacagcaagccacactggccgcctagatccacagatgcaccagactctc
cctgctcagtatctttggacttctgccgggaatggtctagaagatctccaagtgggcttg
ctcattcatattcctcaaatctttatttga

>gi568815590f:43003549_43222874|GENSCAN_predicted_peptide_2|827_aa
MGRRVGAWGISGEPRKLAADAASTRSQHPHTPTHTPAARQDSLARTSMVGNPENRKWPRE
GEGRGGASATTSAADRGEMAATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAE
AGEAVASPMDDGFVSLDSPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDY
FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ
PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY
VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQILQDRGLSKYPNLLNQLLDLQ
PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEEIAEAVNMEKQPQNSRRGLAPREV
PPAVGLLLIMALMNTLLYLCLDHFFIAPRQSTVDPTHCPYGHFRIGQMKNCSPWLSCEEL
RTEVRQLKRVGEGAVKRTGPSAAGLLEFARGPLQTLFAWVPAAVAAEQRIFVNRECCCLI
VPLEVLSQRSTRPLEVDPSSIANVFILGFFTVFLSEWKEHKVALSQLTSLEMKDDFLHGL
QMLKSLQGTHVVTLLGYCEDDNTMLTEYHPLGSLSNLEETLNLSKYQNVNTWQHRLELAM
DYVSIINYLHHSPVGTRVMCDSNDLPKTLSQYLLTSNFSILANDLDALPLVNHSSGMLVK
CGHRELHGDFVAPEQLWPYGEDVPFHDDLMPSYDEKIDIWKIPDISSFLLGHIEGSDMVR
FHLFDIHKACKSQTPSERPTAQDVLETYQKVLDTLRDAMMSQAREML

>gi568815590f:43003549_43222874|GENSCAN_predicted_CDS_2|2484_bp
atgggaagacgcgtgggagcctgggggatctcgggagagccgcgcaaactcgcggcggac
gcagccagcacccgcagccagcacccgcacactcccacccataccccggcagcccgccaa
gactctctggcccgcacctctatggtaggaaacccagaaaacaggaagtggcctcgagag
ggggaagggaggggcggggcctccgccaccacctcagctgcggaccgaggcgagatggcg
gccaccgagggggtcggggaggctgcgcaagggggcgagcccgggcagccggcgcaaccc
ccgccccagccgcacccaccgccgccccagcagcagcacaaggaagagatggcggccgag
gctggggaagccgtggcgtcccccatggacgacgggtttgtgagcctggactcgccctcc
tatgtcctgtacagggacagagcagaatgggctgatatagatccggtgccgcagaatgat
ggccccaatcccgtggtccagatcatttatagtgacaaatttagagatgtttatgattac
ttccgagctgtcctgcagcgtgatgaaagaagtgaacgagcttttaagctaacccgggat
gctattgagttaaatgcagccaattatacagtgtggcatttccggagagttcttttgaag
tcacttcagaaggatctacatgaggaaatgaactacatcactgcaataattgaggagcag
cccaaaaactatcaagtttggcatcataggcgagtattagtggaatggctaagagatcca
tctcaggagcttgaatttattgctgatattcttaatcaggatgcaaagaattatcatgcc
tggcagcatcgacaatgggttattcaggaatttaaactttgggataatgagctgcagtat
gtggaccaacttctgaaagaggatgtgagaaataactctgtctggaaccaaagatacttc
gttatttctaacaccactggctacaatgatcgtgctgtattggagagagaagtccagatt
ttgcaggatcgtggtctttccaaatatcctaatctgttaaatcaattacttgatttacaa
ccaagtcatagttccccctacctaattgcctttcttgtggatatctatgaagacatgcta
gaaaatcagtgtgacaataaggaagacattcttaataaagcattagaggaaattgcagag
gccgtcaacatggaaaagcagccccagaacagcaggagaggcctcgccccccgagaggtg
ccgccagctgttgggctgctgctgatcatggccctgatgaatactctgctctacctctgc
ctcgaccacttcttcatcgctcctcgacaatccactgtggaccccacacactgtccctat
ggtcacttcaggataggacagatgaaaaactgctcaccttggctgtcctgcgaggagctg
agaacagaagtgagacagctgaagcgtgttggggaaggagctgtaaagagaacaggaccc
tcagctgcaggtctgttggagtttgctagaggtccactccagaccctgtttgcctgggta
ccagcagcggtggctgcagaacagcggattttcgtgaaccgcgaatgctgctgtctgatc
gttcctctggaagttttgtctcagaggagtacccggcccctggaagtggatccatcatcc
atcgcaaacgtctttatccttggttttttcacagtctttctgtctgagtggaaggagcac
aaagttgcactctcacagctcaccagcctggagatgaaagatgatttcctccatggactg
cagatgctgaaatctctccaaggcacacatgttgtcacgctgcttggctattgtgaggat
gacaacactatgcttactgaatatcaccctctaggttccttgagtaacctggaagaaaca
ctaaacctttcaaagtaccaaaatgtgaacacgtggcagcacaggctggagctggccatg
gactatgtcagcatcattaattacctgcaccacagccctgtgggcacacgggtcatgtgc
gactccaacgacctgccgaagacactgtcccagtatctgctaacaagcaacttcagcatt
ttggcaaatgacttggacgccttacccctggtgaaccacagctccgggatgctggtgaag
tgcggccacagggagctgcatggggatttcgtggctccagagcaactgtggccctatgga
gaggacgtgcctttccacgatgatctcatgccctcatatgatgagaagattgacatttgg
aagatcccagacatctccagtttccttctggggcacattgaagggagtgatatggtccga
ttccatttgtttgatattcacaaagcatgcaagagccagactccctcagaaagacccact
gcccaggacgttctggagacctaccagaaggtcttggatacacttagagatgccatgatg
tctcaggcaagagagatgctgtga

>gi568815590f:43003549_43222874|GENSCAN_predicted_peptide_3|342_aa
MSGAGRALAALLLAASVLSAALLAPGGSSGRDAQAAPPRDLDKKRHAELKMDQALLLIHN
ELLWTNLTVYWKSECCYHCLFQVLVNVPQSPKAGKPSAAAASVSTQHGSILQLNDTLEEK
EVCRLEYRFGEFGNYSLLVKNIHNGVSEIACDLAVNEDPVDSNLPVSIAFLIGLAVIIVI
SFLRLLLSLDDFNNWISKAISSRETDRLINSARKDFLDVKVNSAASPVWKTIMILSVCID
RGVVDEARASVHLDTWIALILMVFVNYGGGKYWYFKHASWNVSWDKVRIPGVLQRLGVTY
FVVAVLELLFAKPVPEHCASAPVCDVPHPVTKCSHCLIPTYE

>gi568815590f:43003549_43222874|GENSCAN_predicted_CDS_3|1029_bp
atgagcggggcgggcagggcgctggccgcgctgctgctggccgcgtccgtgctgagcgcc
gcgctgctggcccccggcggctcttcggggcgcgatgcccaggccgcgccgccacgagac
ttagacaaaaaaagacatgcagagctgaagatggatcaggctttgctactcatccataat
gaacttctctggaccaacttgaccgtctactggaaatctgaatgctgttatcactgcttg
tttcaggttctggtaaacgttcctcagagtccaaaagcagggaagcctagtgctgcagct
gcctctgtcagcacccagcacggatctatcctgcagctgaacgacaccttggaagagaaa
gaagtttgtaggttggaatacagatttggagaatttggaaactattctctcttggtaaag
aacatccataatggagttagtgaaattgcctgtgacctggctgtgaacgaggatccagtt
gatagtaaccttcctgtgagcattgcattccttattggtcttgctgtcatcattgtgata
tcctttctgaggctcttgttgagtttggatgactttaacaattggatttctaaagccata
agttctcgagaaactgatcgcctcatcaattctgctaggaaggatttcttggatgtaaaa
gtaaactctgcagcctctccagtctggaagaccatcatgatcctcagtgtctgtattgac
agaggagtagtggatgaggccagagccagtgtccacttggatacgtggattgctcttata
ctcatggtctttgtcaattatggaggaggaaaatattggtacttcaaacatgcaagttgg
aatgtgtcttgggacaaggtgcgcattcctggtgtgctgcagcgattgggagtgacatac
tttgtggttgctgtgttggagctcctctttgctaaacctgtgcctgaacattgtgcctcg
gccccggtgtgtgatgttccccaccctgtgaccaagtgttctcattgtttaattcccacc
tatgagtga

>gi568815590f:43003549_43222874|GENSCAN_predicted_peptide_4|355_aa
MNIDAKILNKILGNRIQQHIKKLIHHDQVGFIPGMQGWFNICKSINVIHHINRTKNKNHM
IISIDAEKAFDKIQQPFMLKTFNKLGIDGTCLKIIRATYDKPTANIILNGQKLEAFPLKT
GTRQGCPLSPLLFNIGLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIISA
QNFLKLISNFSKVSGYKINVQKSQAFLYTNNRQTESQIMSEVPFTIASKRIKYLGIQLTR
DVKDLLKENYKPLLNKIKEDTNKWKNIPCLWIGRINIMKMAILPKVIYRFNAIPIKLPMT
FFTELEKTTLKFIWNQKRACIAKTILSHKNKAGGIMPPGFKLYYKATVTKTAWYW

>gi568815590f:43003549_43222874|GENSCAN_predicted_CDS_4|1068_bp
atgaacatcgatgcaaaaatcctcaataaaatactgggaaaccgaatccagcagcacatc
aaaaagcttatccaccatgatcaagtcggcttcattcctgggatgcaaggctggttcaac
atatgcaaatcaataaatgtaatccatcatataaacagaaccaaaaacaaaaaccacatg
attatctcaatagatgcagaaaaggccttcgacaaaattcaacagcccttcatgctaaaa
actttcaataaactaggtatcgatgggacctgtctcaaaataataagagctacttatgac
aaacccacagccaatatcatactgaatggacaaaaactggaagcattccctttgaaaact
ggcacaagacagggatgccctctctcaccactcctgttcaacataggattggaagttctg
gccagggcaatcaggcaggagaaagaaataaaaggtattcaattaggaaaggaggaagtc
aaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccatcatctcagcc
caaaatttccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgta
caaaaatcacaagcattcctatacaccaataacagacaaacagagagccaaatcatgagt
gaagtcccattcacaattgcttcaaagagaataaaatacctaggaatccaacttacaagg
gatgtgaaggacctcctcaaggagaactacaaaccactgctcaacaaaataaaagaggac
acaaacaaatggaagaacattccatgcttatggataggaagaatcaatatcatgaaaatg
gcgatactgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatgact
ttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcctgc
attgccaagacaatcctaagccacaagaacaaagctggaggtatcatgccacctggcttc
aaactatactacaaggctacagtaaccaaaacagcatggtactggtag

>gi568815590f:43003549_43222874|GENSCAN_predicted_peptide_5|341_aa
MLASGYLGPGGIGDFGKYPNCTGGAAGYIDRLLLGDDHLYQHPSSAVLYHTEVAYDPEGI
LGTINSIVMAFLGVQEEEKEEEEEEEEEEEEEEEGVEEEEDEEEEGVEEEEEEEEEKEGV
EEDGVEEEEEEGLEEEEGEGVDEEEEGVEEEEEEEEGCCPDWVTKQACLTEPLSPLWRIL
FGPCLEVRATEPAQAGKILLYYKARTKDILIRFTAWCCILGLISVALTKVSENEGFIPVN
KNLWSLSYVTTLSSFAFFILLVLYPVVDVKGLWTGTPFFYPGMNSILVYVGHEVFENYFP
FQWKLKDNQSHKEHLTQNIVATALWVLIAYILYRKKIFWKI

>gi568815590f:43003549_43222874|GENSCAN_predicted_CDS_5|1026_bp
atgttggccagtggttatcttggtcctgggggcattggagattttggcaagtatccaaat
tgcactggaggagctgcaggctacatcgaccgcctgctgctgggagacgatcacctttac
cagcacccatcttctgctgtactttaccacaccgaggtggcctatgaccccgagggcatc
ctgggcaccatcaactccatcgtgatggcctttttaggagttcaggaggaggagaaggaa
gaggaggaggaggaggaggaagaagaggaggaagaggaggagggagtagaggaggaggag
gatgaggaggaagagggggtggaggaagaggaggaggaggaagaagagaaggagggtgtg
gaggaggatggggtggaggaagaggaggaggaggggctggaggaggaggagggtgagggt
gtggatgaggaggaggagggtgtggaggaggaggaggaagaggaggaggggtgctgccca
gactgggtcaccaaacaggcctgtctgacggaacccttgtcacctttgtggagaattctc
tttgggccctgcctggaagtaagagccacggagcctgcccaggcaggaaaaatactattg
tattacaaggctcggaccaaagacatcctgattcgattcactgcttggtgttgtattctt
gggctcatttctgttgctctgacgaaggtttctgaaaatgaaggctttattccagtaaac
aaaaatctctggtccctttcgtatgtcactacgctcagttcttttgccttcttcatcctg
ctggtcctgtacccagttgtggatgtgaaggggctgtggacaggaaccccattcttttat
ccaggaatgaattccattctggtatatgtcggccacgaggtgtttgagaactacttcccc
tttcagtggaagctgaaggacaaccagtcccacaaggagcacctgactcagaacatcgtc
gccactgccctctgggtgctcattgcctacatcctctatagaaagaagattttttggaaa
atctga

>gi568815590f:43003549_43222874|GENSCAN_predicted_peptide_6|148_aa
MSYHQPERISFYNKKSNERWPEHGPLHHFLPLHCQTSHTGASVTVPAQDLLTPVGSYIPS
LQFGASPMSTYDHGWTGPGAQEPIGKGPSCLCKPQFSGRLPTTCIAASYYKDRRFVSPPD
NANEQNPGGVVTRTAIPLSASSVTHPAL

>gi568815590f:43003549_43222874|GENSCAN_predicted_CDS_6|447_bp
atgagctaccaccagccagaacgcatttctttctacaataaaaagtcaaatgaaagatgg
cctgaacacggccccctccatcacttcctgcccctccactgtcaaacatctcacacagga
gcctctgtcacggtccccgcccaggaccttctcacccctgttggcagttacatcccatcc
ctacagtttggagcttcacccatgtccacatatgaccacgggtggacaggacccggggcc
caggaacccatcggcaaagggccctcctgcctgtgcaagccacaattcagtgggcgtctt
cctacaacttgcatcgctgcctcctattacaaagacagacggtttgtttctcccccggac
aacgccaatgaacagaatccaggtggcgtggtcacaaggacagccatcccgctcagtgcc
tcctcggtgacgcaccccgccctttaa

>gi568815590f:43003549_43222874|GENSCAN_predicted_peptide_7|27_aa
XSPFVLMGHDQGIRAQLCLMWKDWTIS

>gi568815590f:43003549_43222874|GENSCAN_predicted_CDS_7|84_bp
ntcagcccctttgtcctcatgggccatgaccagggcattcgggctcagctctgcctgatg
tggaaggactggacaatctcctaa