Result of FASTA (ccds) for pF1KE0931
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0931, 390 aa
  1>>>pF1KE0931 390 - 390 aa - 390 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4723+/-0.000722; mu= 12.5316+/- 0.044
 mean_var=98.2555+/-19.301, 0's: 0 Z-trim(111.9): 11  B-trim: 0 in 0/51
 Lambda= 0.129389
 statistics sampled from 12732 (12743) to 12732 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.391), width:  16
 Scan time:  2.300

The best scores are:                                      opt bits E(32554)
CCDS1050.1 ILF2 gene_id:3608|Hs108|chr1            ( 390) 2557 487.2 1.1e-137
CCDS72919.1 ILF2 gene_id:3608|Hs108|chr1           ( 352) 2260 431.7  5e-121
CCDS55337.1 STRBP gene_id:55342|Hs108|chr9         ( 658)  330 71.6 2.4e-12
CCDS6851.1 STRBP gene_id:55342|Hs108|chr9          ( 672)  330 71.6 2.4e-12
CCDS45966.1 ILF3 gene_id:3609|Hs108|chr19          ( 690)  326 70.8 4.1e-12
CCDS12247.1 ILF3 gene_id:3609|Hs108|chr19          ( 702)  326 70.8 4.2e-12
CCDS45967.1 ILF3 gene_id:3609|Hs108|chr19          ( 706)  326 70.8 4.2e-12
CCDS12246.1 ILF3 gene_id:3609|Hs108|chr19          ( 894)  326 70.9 5.1e-12
CCDS45965.1 ILF3 gene_id:3609|Hs108|chr19          ( 898)  326 70.9 5.2e-12


>>CCDS1050.1 ILF2 gene_id:3608|Hs108|chr1                 (390 aa)
 initn: 2557 init1: 2557 opt: 2557  Z-score: 2585.3  bits: 487.2 E(32554): 1.1e-137
Smith-Waterman score: 2557; 100.0% identity (100.0% similar) in 390 aa overlap (1-390:1-390)

               10        20        30        40        50        60
pF1KE0 MRGDRGRGRGGRFGSRGGPGGGFRPFVPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MRGDRGRGRGGRFGSRGGPGGGFRPFVPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NQDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NQDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEISSSDATVKILITTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEISSSDATVKILITTV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 PPNLRKLDPELHLDIKVLQSALAAIRHARWFEENASQSTVKVLIRLLKDLRIRFPGFEPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PPNLRKLDPELHLDIKVLQSALAAIRHARWFEENASQSTVKVLIRLLKDLRIRFPGFEPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 TPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCESGNFRVHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCESGNFRVHT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 VMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASYLASEISTWDGVIVTPSEKAYEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASYLASEISTWDGVIVTPSEKAYEK
              310       320       330       340       350       360

              370       380       390
pF1KE0 PPEKKEGEEEEENTEEPPQGEEEESMETQE
       ::::::::::::::::::::::::::::::
CCDS10 PPEKKEGEEEEENTEEPPQGEEEESMETQE
              370       380       390

>>CCDS72919.1 ILF2 gene_id:3608|Hs108|chr1                (352 aa)
 initn: 2260 init1: 2260 opt: 2260  Z-score: 2286.4  bits: 431.7 E(32554): 5e-121
Smith-Waterman score: 2260; 100.0% identity (100.0% similar) in 352 aa overlap (39-390:1-352)

       10        20        30        40        50        60        
pF1KE0 RGGRFGSRGGPGGGFRPFVPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNS
                                     ::::::::::::::::::::::::::::::
CCDS72                               MAFPRVKPAPDETSFSEALLKRNQDLAPNS
                                             10        20        30

       70        80        90       100       110       120        
pF1KE0 AEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 AEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKI
               40        50        60        70        80        90

      130       140       150       160       170       180        
pF1KE0 LPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 LPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLD
              100       110       120       130       140       150

      190       200       210       220       230       240        
pF1KE0 PELHLDIKVLQSALAAIRHARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PELHLDIKVLQSALAAIRHARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLL
              160       170       180       190       200       210

      250       260       270       280       290       300        
pF1KE0 GHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCESGNFRVHTVMTLEQQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCESGNFRVHTVMTLEQQD
              220       230       240       250       260       270

      310       320       330       340       350       360        
pF1KE0 MVCYTAQTLVRILSHGGFRKILGQEGDASYLASEISTWDGVIVTPSEKAYEKPPEKKEGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MVCYTAQTLVRILSHGGFRKILGQEGDASYLASEISTWDGVIVTPSEKAYEKPPEKKEGE
              280       290       300       310       320       330

      370       380       390
pF1KE0 EEEENTEEPPQGEEEESMETQE
       ::::::::::::::::::::::
CCDS72 EEEENTEEPPQGEEEESMETQE
              340       350  

>>CCDS55337.1 STRBP gene_id:55342|Hs108|chr9              (658 aa)
 initn: 245 init1: 172 opt: 330  Z-score: 335.2  bits: 71.6 E(32554): 2.4e-12
Smith-Waterman score: 343; 27.0% identity (58.0% similar) in 293 aa overlap (102-373:71-356)

              80        90       100       110       120       130 
pF1KE0 ASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPT
                                     : ..:   :: .       .::.. :  ::
CCDS55 GTKTEGETEVKKDEAGENYSKDQGGRTLCGVMRIGLVAKGLLIKDDMDLELVLMCKDKPT
               50        60        70        80        90       100

             140        150       160       170            180     
pF1KE0 LEAVAALGNKV-VESLRAQDPSEVLTMLTNETGFEISSSDA---TVKILITT--VPPNLR
          . .. ... ..  .  . .  . . .::... : ..     :.:...:.  .  .:.
CCDS55 ETLLNTVKDNLPIQIQKLTEEKYQVEQCVNEASIIIRNTKEPTLTLKVILTSPLIRDELE
              110       120       130       140       150       160

                  190       200       210         220       230    
pF1KE0 KLD---------PELHLDIKVLQSALAAIRHARWFEENAS--QSTVKVLIRLLKDLRIRF
       : :         :.: :: .   .:::..:::.::.  :.  .: : ...:.:.::  : 
CCDS55 KKDGENVSMKDPPDL-LDRQKCLNALASLRHAKWFQARANGLKSCV-IVLRILRDLCNRV
              170        180       190       200        210        

          240       250       260       270       280       290    
pF1KE0 PGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCESG
       : . ::  : :.:. . ..  .   .::. . : :: .. ::.:..:::. :. ::::  
CCDS55 PTWAPLKGWPLELICEKSI--GTCNRPLGAGEALRRVMECLASGILLPGGPGLHDPCERD
      220       230         240       250       260       270      

          300       310       320       330       340       350    
pF1KE0 NFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASYLASEISTWDGVIVTPS
          . . ::..:.. . ..::  .:. . : . :.: ..   :    .  .:.   :: .
CCDS55 PTDALSYMTIQQKEDITHSAQHALRLSAFGQIYKVLEMDPLPSSKPFQKYSWS---VTDK
        280       290       300       310       320          330   

              360       370       380       390                    
pF1KE0 E----KAYEKPPEKKEGEEEEENTEEPPQGEEEESMETQE                    
       :    .: ..: :   :.... :                                     
CCDS55 EGAGSSALKRPFEDGLGDDKDPNKKMKRNLRKILDSKAIDLMNALMRLNQIRPGLQYKLL
           340       350       360       370       380       390   

>>CCDS6851.1 STRBP gene_id:55342|Hs108|chr9               (672 aa)
 initn: 245 init1: 172 opt: 330  Z-score: 335.1  bits: 71.6 E(32554): 2.4e-12
Smith-Waterman score: 343; 27.0% identity (58.0% similar) in 293 aa overlap (102-373:85-370)

              80        90       100       110       120       130 
pF1KE0 ASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPT
                                     : ..:   :: .       .::.. :  ::
CCDS68 GTKTEGETEVKKDEAGENYSKDQGGRTLCGVMRIGLVAKGLLIKDDMDLELVLMCKDKPT
           60        70        80        90       100       110    

             140        150       160       170            180     
pF1KE0 LEAVAALGNKV-VESLRAQDPSEVLTMLTNETGFEISSSDA---TVKILITT--VPPNLR
          . .. ... ..  .  . .  . . .::... : ..     :.:...:.  .  .:.
CCDS68 ETLLNTVKDNLPIQIQKLTEEKYQVEQCVNEASIIIRNTKEPTLTLKVILTSPLIRDELE
          120       130       140       150       160       170    

                  190       200       210         220       230    
pF1KE0 KLD---------PELHLDIKVLQSALAAIRHARWFEENAS--QSTVKVLIRLLKDLRIRF
       : :         :.: :: .   .:::..:::.::.  :.  .: : ...:.:.::  : 
CCDS68 KKDGENVSMKDPPDL-LDRQKCLNALASLRHAKWFQARANGLKSCV-IVLRILRDLCNRV
          180        190       200       210        220       230  

          240       250       260       270       280       290    
pF1KE0 PGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCESG
       : . ::  : :.:. . ..  .   .::. . : :: .. ::.:..:::. :. ::::  
CCDS68 PTWAPLKGWPLELICEKSI--GTCNRPLGAGEALRRVMECLASGILLPGGPGLHDPCERD
            240       250         260       270       280       290

          300       310       320       330       340       350    
pF1KE0 NFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASYLASEISTWDGVIVTPS
          . . ::..:.. . ..::  .:. . : . :.: ..   :    .  .:.   :: .
CCDS68 PTDALSYMTIQQKEDITHSAQHALRLSAFGQIYKVLEMDPLPSSKPFQKYSWS---VTDK
              300       310       320       330       340          

              360       370       380       390                    
pF1KE0 E----KAYEKPPEKKEGEEEEENTEEPPQGEEEESMETQE                    
       :    .: ..: :   :.... :                                     
CCDS68 EGAGSSALKRPFEDGLGDDKDPNKKMKRNLRKILDSKAIDLMNALMRLNQIRPGLQYKLL
       350       360       370       380       390       400       

>>CCDS45966.1 ILF3 gene_id:3609|Hs108|chr19               (690 aa)
 initn: 249 init1: 141 opt: 326  Z-score: 330.9  bits: 70.8 E(32554): 4.1e-12
Smith-Waterman score: 353; 27.8% identity (55.3% similar) in 313 aa overlap (102-390:92-395)

              80        90       100       110       120       130 
pF1KE0 ASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPT
                                     : .::   :: .  :    .::.. :  ::
CCDS45 SDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKPT
              70        80        90       100       110       120 

             140             150       160       170       180     
pF1KE0 LEAVAALGNKVVESLRAQ------DPSEVLTMLTNETGFEISSSDATVKILITTVPPNLR
           .:: .::...:  :      :  :.:  . . .    ....  ... :  . : .:
CCDS45 ----TALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVR
                 130       140       150       160       170       

                      190       200       210         220       230
pF1KE0 KL-------------DPELHLDIKVLQSALAAIRHARWFEENAS--QSTVKVLIRLLKDL
       .              ::   :: .   .:::..:::.::.  :.  .: : ..::.:.::
CCDS45 EEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCV-IVIRVLRDL
       180       190       200       210       220        230      

              240       250       260       270       280       290
pF1KE0 RIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDP
         : : . ::  : :.:: . ..  . . .:.. . : :: :. ::.:. .: . :: ::
CCDS45 CTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDP
        240       250         260       270       280       290    

              300       310       320       330       340       350
pF1KE0 CESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASYLASEISTWDGVI
       ::.    .   .  .:.. .  .::  .:. . : ..:.::..   : . .. .. . : 
CCDS45 CEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVD
          300       310       320       330       340       350    

                 360       370       380       390                 
pF1KE0 VT---PSEKAYEKPPEKKEGEEEEENTEEPPQGEEEESMETQE                 
        :   :   .:   : :.  ::. :  :. :. .... .. .:                 
CCDS45 YTVQIPPSTTYAITPMKRPMEEDGE--EKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQL
          360       370         380       390       400       410  

CCDS45 KPGLQYKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAE
            420       430       440       450       460       470  

>>CCDS12247.1 ILF3 gene_id:3609|Hs108|chr19               (702 aa)
 initn: 249 init1: 141 opt: 326  Z-score: 330.8  bits: 70.8 E(32554): 4.2e-12
Smith-Waterman score: 353; 27.8% identity (55.3% similar) in 313 aa overlap (102-390:92-395)

              80        90       100       110       120       130 
pF1KE0 ASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPT
                                     : .::   :: .  :    .::.. :  ::
CCDS12 SDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKPT
              70        80        90       100       110       120 

             140             150       160       170       180     
pF1KE0 LEAVAALGNKVVESLRAQ------DPSEVLTMLTNETGFEISSSDATVKILITTVPPNLR
           .:: .::...:  :      :  :.:  . . .    ....  ... :  . : .:
CCDS12 ----TALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVR
                 130       140       150       160       170       

                      190       200       210         220       230
pF1KE0 KL-------------DPELHLDIKVLQSALAAIRHARWFEENAS--QSTVKVLIRLLKDL
       .              ::   :: .   .:::..:::.::.  :.  .: : ..::.:.::
CCDS12 EEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCV-IVIRVLRDL
       180       190       200       210       220        230      

              240       250       260       270       280       290
pF1KE0 RIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDP
         : : . ::  : :.:: . ..  . . .:.. . : :: :. ::.:. .: . :: ::
CCDS12 CTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDP
        240       250         260       270       280       290    

              300       310       320       330       340       350
pF1KE0 CESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASYLASEISTWDGVI
       ::.    .   .  .:.. .  .::  .:. . : ..:.::..   : . .. .. . : 
CCDS12 CEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVD
          300       310       320       330       340       350    

                 360       370       380       390                 
pF1KE0 VT---PSEKAYEKPPEKKEGEEEEENTEEPPQGEEEESMETQE                 
        :   :   .:   : :.  ::. :  :. :. .... .. .:                 
CCDS12 YTVQIPPSTTYAITPMKRPMEEDGE--EKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQL
          360       370         380       390       400       410  

CCDS12 KPGLQYKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAE
            420       430       440       450       460       470  

>>CCDS45967.1 ILF3 gene_id:3609|Hs108|chr19               (706 aa)
 initn: 213 init1: 141 opt: 326  Z-score: 330.7  bits: 70.8 E(32554): 4.2e-12
Smith-Waterman score: 353; 27.8% identity (55.3% similar) in 313 aa overlap (102-390:92-395)

              80        90       100       110       120       130 
pF1KE0 ASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPT
                                     : .::   :: .  :    .::.. :  ::
CCDS45 SDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKPT
              70        80        90       100       110       120 

             140             150       160       170       180     
pF1KE0 LEAVAALGNKVVESLRAQ------DPSEVLTMLTNETGFEISSSDATVKILITTVPPNLR
           .:: .::...:  :      :  :.:  . . .    ....  ... :  . : .:
CCDS45 ----TALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVR
                 130       140       150       160       170       

                      190       200       210         220       230
pF1KE0 KL-------------DPELHLDIKVLQSALAAIRHARWFEENAS--QSTVKVLIRLLKDL
       .              ::   :: .   .:::..:::.::.  :.  .: : ..::.:.::
CCDS45 EEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCV-IVIRVLRDL
       180       190       200       210       220        230      

              240       250       260       270       280       290
pF1KE0 RIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDP
         : : . ::  : :.:: . ..  . . .:.. . : :: :. ::.:. .: . :: ::
CCDS45 CTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDP
        240       250         260       270       280       290    

              300       310       320       330       340       350
pF1KE0 CESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASYLASEISTWDGVI
       ::.    .   .  .:.. .  .::  .:. . : ..:.::..   : . .. .. . : 
CCDS45 CEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVD
          300       310       320       330       340       350    

                 360       370       380       390                 
pF1KE0 VT---PSEKAYEKPPEKKEGEEEEENTEEPPQGEEEESMETQE                 
        :   :   .:   : :.  ::. :  :. :. .... .. .:                 
CCDS45 YTVQIPPSTTYAITPMKRPMEEDGE--EKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQL
          360       370         380       390       400       410  

CCDS45 KPGLQYKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAE
            420       430       440       450       460       470  

>>CCDS12246.1 ILF3 gene_id:3609|Hs108|chr19               (894 aa)
 initn: 213 init1: 141 opt: 326  Z-score: 329.2  bits: 70.9 E(32554): 5.1e-12
Smith-Waterman score: 353; 27.8% identity (55.3% similar) in 313 aa overlap (102-390:92-395)

              80        90       100       110       120       130 
pF1KE0 ASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPT
                                     : .::   :: .  :    .::.. :  ::
CCDS12 SDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKPT
              70        80        90       100       110       120 

             140             150       160       170       180     
pF1KE0 LEAVAALGNKVVESLRAQ------DPSEVLTMLTNETGFEISSSDATVKILITTVPPNLR
           .:: .::...:  :      :  :.:  . . .    ....  ... :  . : .:
CCDS12 ----TALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVR
                 130       140       150       160       170       

                      190       200       210         220       230
pF1KE0 KL-------------DPELHLDIKVLQSALAAIRHARWFEENAS--QSTVKVLIRLLKDL
       .              ::   :: .   .:::..:::.::.  :.  .: : ..::.:.::
CCDS12 EEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCV-IVIRVLRDL
       180       190       200       210       220        230      

              240       250       260       270       280       290
pF1KE0 RIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDP
         : : . ::  : :.:: . ..  . . .:.. . : :: :. ::.:. .: . :: ::
CCDS12 CTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDP
        240       250         260       270       280       290    

              300       310       320       330       340       350
pF1KE0 CESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASYLASEISTWDGVI
       ::.    .   .  .:.. .  .::  .:. . : ..:.::..   : . .. .. . : 
CCDS12 CEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVD
          300       310       320       330       340       350    

                 360       370       380       390                 
pF1KE0 VT---PSEKAYEKPPEKKEGEEEEENTEEPPQGEEEESMETQE                 
        :   :   .:   : :.  ::. :  :. :. .... .. .:                 
CCDS12 YTVQIPPSTTYAITPMKRPMEEDGE--EKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQL
          360       370         380       390       400       410  

CCDS12 KPGLQYKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAE
            420       430       440       450       460       470  

>>CCDS45965.1 ILF3 gene_id:3609|Hs108|chr19               (898 aa)
 initn: 213 init1: 141 opt: 326  Z-score: 329.1  bits: 70.9 E(32554): 5.2e-12
Smith-Waterman score: 353; 27.8% identity (55.3% similar) in 313 aa overlap (102-390:92-395)

              80        90       100       110       120       130 
pF1KE0 ASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPT
                                     : .::   :: .  :    .::.. :  ::
CCDS45 SDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKPT
              70        80        90       100       110       120 

             140             150       160       170       180     
pF1KE0 LEAVAALGNKVVESLRAQ------DPSEVLTMLTNETGFEISSSDATVKILITTVPPNLR
           .:: .::...:  :      :  :.:  . . .    ....  ... :  . : .:
CCDS45 ----TALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVR
                 130       140       150       160       170       

                      190       200       210         220       230
pF1KE0 KL-------------DPELHLDIKVLQSALAAIRHARWFEENAS--QSTVKVLIRLLKDL
       .              ::   :: .   .:::..:::.::.  :.  .: : ..::.:.::
CCDS45 EEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCV-IVIRVLRDL
       180       190       200       210       220        230      

              240       250       260       270       280       290
pF1KE0 RIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDP
         : : . ::  : :.:: . ..  . . .:.. . : :: :. ::.:. .: . :: ::
CCDS45 CTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDP
        240       250         260       270       280       290    

              300       310       320       330       340       350
pF1KE0 CESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASYLASEISTWDGVI
       ::.    .   .  .:.. .  .::  .:. . : ..:.::..   : . .. .. . : 
CCDS45 CEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVD
          300       310       320       330       340       350    

                 360       370       380       390                 
pF1KE0 VT---PSEKAYEKPPEKKEGEEEEENTEEPPQGEEEESMETQE                 
        :   :   .:   : :.  ::. :  :. :. .... .. .:                 
CCDS45 YTVQIPPSTTYAITPMKRPMEEDGE--EKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQL
          360       370         380       390       400       410  

CCDS45 KPGLQYKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAE
            420       430       440       450       460       470  




390 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:34:29 2016 done: Sat Nov  5 04:34:29 2016
 Total Scan time:  2.300 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com