GENSCAN 1.0	Date run:  5-Nov-116	Time: 04:34:17

Sequence gi568815595r:141852516_142095142 : 242627 bp : 41.16% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   5506   5521   16  0  1  109   77    11 0.854   2.51
 1.02 Intr +   7229   7425  197  0  2   43  116    74 0.961   3.91
 1.03 Term +   8369   8443   75  1  0   96   53    91 0.931   3.26
 1.04 PlyA +   9788   9793    6                               1.05

 2.02 PlyA -  10283  10278    6                              -0.45
 2.01 Sngl -  12764  12492  273  2  0  114   45   428 0.991  36.18
 2.00 Prom -  15828  15789   40                              -5.25

 3.05 PlyA -  15927  15922    6                               1.05
 3.04 Term -  23566  23475   92  2  2   76   54    73 0.512  -0.40
 3.03 Intr -  24456  24178  279  1  0   79   39   244 0.519  15.13
 3.02 Intr -  29417  29295  123  0  0  121   86   -13 0.658   1.44
 3.01 Init -  33494  33410   85  2  1   74   49    69 0.484   2.63
 3.00 Prom -  36272  36233   40                              -4.25

 4.03 PlyA -  36432  36427    6                               1.05
 4.02 Term -  42244  42115  130  0  1   16   42   245 0.635   9.37
 4.01 Init -  44671  44640   32  1  2   33   99    16 0.455  -3.46
 4.00 Prom -  44973  44934   40                              -6.65

 5.00 Prom +  46383  46422   40                              -5.65
 5.01 Init +  51167  51233   67  1  1   62   91    86 0.738   7.59
 5.02 Intr +  54652  54759  108  2  0  109   92    63 0.829   8.14
 5.03 Intr +  61137  61321  185  1  2   74   51   121 0.945   5.59
 5.04 Intr +  69462  69548   87  2  0   62  103    46 0.765   2.75
 5.05 Intr +  73016  73185  170  1  2   77    2   168 0.071   4.92
 5.06 Intr +  76221  76488  268  0  1   -6   88   200 0.070   7.21
 5.07 Intr +  81669  81899  231  2  0   61   94    73 0.381   2.25
 5.08 Term +  85452  85802  351  2  0   28   54   228 0.416   6.90
 5.09 PlyA +  86244  86249    6                               1.05

 6.04 PlyA -  86284  86279    6                              -0.45
 6.03 Term -  88164  87941  224  1  2   64   49   259 0.714  15.70
 6.02 Intr -  89708  89594  115  2  1   92   22   110 0.397   3.90
 6.01 Init -  91759  91757    3  1  0  113   81     0 0.604   1.85
 6.00 Prom -  96187  96148   40                              -5.35

 7.13 PlyA -  97298  97293    6                              -0.45
 7.12 Term - 100181  99998  184  1  1   61   43   194 0.974   8.23
 7.11 Intr - 100501 100396  106  2  1   99  102    63 0.977   7.15
 7.10 Intr - 107325 107159  167  2  2   77   91   204 0.998  18.28
 7.09 Intr - 111448 111297  152  1  2   63   89    96 0.994   5.24
 7.08 Intr - 117626 117558   69  2  0   25  103    83 0.439   1.96
 7.07 Intr - 121676 121533  144  2  0   41  107    91 0.822   5.86
 7.06 Intr - 126167 126005  163  1  1   67   88   180 0.679  14.96
 7.05 Intr - 141070 141023   48  0  0  103  113    -8 0.059   0.08
 7.04 Intr - 147839 147737  103  0  1   56   53    81 0.011  -0.29
 7.03 Intr - 148939 148685  255  2  0   95   43   120 0.019   4.69
 7.02 Intr - 181047 180921  127  0  1   85   76    63 0.773   4.13
 7.01 Init - 181439 181395   45  2  0   65  100     4 0.729   0.03
 7.00 Prom - 182511 182472   40                              -2.75

 8.03 PlyA - 182561 182556    6                               1.05
 8.02 Term - 191685 191108  578  1  2   65   42   690 0.127  55.74
 8.01 Init - 200956 200842  115  1  1   90   35   103 0.304   5.62
 8.00 Prom - 211626 211587   40                              -4.25

 9.04 PlyA - 211960 211955    6                               1.05
 9.03 Term - 225413 225306  108  2  0   78   53    98 0.046   2.83
 9.02 Intr - 225932 225782  151  1  1   94   64    15 0.019  -1.06
 9.01 Intr - 240612 240546   67  1  1   63  116    47 0.020   2.04

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  73016  73186  171  1  0   77   35   167 0.842   7.14
S.002 Sngl - 191683 191108  576  1  0   93   42   691 0.863  60.92


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:141852516_142095142|GENSCAN_predicted_peptide_1|95_aa
MEESQGEWTSDSMPRTSEIYGNDSGIGVLDSRSGESSYRRGQRTTASLRNWEGTVITRDL
GTEQGSARNRKVCLPSTRDTGASTKAYTERIRTSC

>gi568815595r:141852516_142095142|GENSCAN_predicted_CDS_1|288_bp
atggaggaatcacaaggcgagtggacaagtgattctatgccaaggacatctgagatatat
gggaatgactcaggcataggagttttggactccaggtcaggcgaatctagttaccggagg
ggacagagaacaaccgcctcactgagaaactgggaggggactgtaattaccagggactta
ggaacagagcaggggtcagccaggaacaggaaggtgtgcctgccctcaacccgggacact
ggagctagcaccaaagcctacacggagaggatcaggacatcctgttga

>gi568815595r:141852516_142095142|GENSCAN_predicted_peptide_2|90_aa
MPKRKAEGDTKRDKAKVKDEPQRRSVRLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA
DAGEEGNNPAENGVAKTDQAQKAESPGDAK

>gi568815595r:141852516_142095142|GENSCAN_predicted_CDS_2|273_bp
atgcccaagagaaaggctgaaggggatactaaaagagataaagccaaggtgaaggacgaa
ccacagagaagatccgtgaggttgtctgctaagcctgctcctccaaagccagagcccaag
cctaaaaaggcccctgcaaaaaagggagagaaggtacccaaagggaaaaagggaaaagct
gatgctggcgaggaggggaataaccctgcagaaaatggagttgccaaaacagaccaggca
cagaaagctgaaagtcctggagatgccaagtga

>gi568815595r:141852516_142095142|GENSCAN_predicted_peptide_3|192_aa
MILTDSLDLTGDAPVVKTHFPQGQQHYRGLLPGQSRKYFLLLDNGSVPALLFCCCHHMYH
WPAFIACTQDRARRPRDRGRPRTPSCCPLTPALGGAPQEFSGGRVVDEELPLGQALVEGL
LLVLRHGVRADGERSCGRGDGGGEGCGGASRLRRRSPETAVKGRSLGSVTFLQDALRGIA
RGSHNVHGALLF

>gi568815595r:141852516_142095142|GENSCAN_predicted_CDS_3|579_bp
atgattctcactgattctttggatcttactggagatgcaccagtagttaagacccacttt
ccccagggtcaacaacactacaggggactacttcctggacaatccaggaagtactttctc
ctgctagataatggctcagtacctgcccttctcttctgctgctgtcaccacatgtaccat
tggcctgcgtttatagcctgcacacaggaccgcgcccggcgcccccgggaccgaggccgg
ccccggacgcccagctgctgcccgctcaccccagctcttggcggtgcgccccaggaattc
tccggtggtcgggttgtagatgaagagcttccactcggccaggctctggttgagggactt
cttctcgttcttcgtcatggtgtgcgcgcggacggcgagaggagctgcggccgcggggat
ggaggcggcgagggctgcggaggcgcgtcccggctccggcggcgcagcccggagacggca
gtgaagggacgctctctgggctctgtgacgttcctacaggacgctctgcgggggatcgcg
cggggctcccacaatgtacacggtgcactgctgttctga

>gi568815595r:141852516_142095142|GENSCAN_predicted_peptide_4|53_aa
MRWSTTAGAVRRYPEEGIVITEDSPMRVAAPEDLPVGQEMKVEDGDTDDSDSV

>gi568815595r:141852516_142095142|GENSCAN_predicted_CDS_4|162_bp
atgagatggagtaccacagcaggagcagtcaggaggtatccagaagaaggcattgtcatc
acagaggacagccccatgcgtgttgctgcccctgaagaccttccagtggggcaagagatg
aaggtggaagacggtgatactgatgattctgactctgtgtag

>gi568815595r:141852516_142095142|GENSCAN_predicted_peptide_5|488_aa
MWVMLQTLNDEVPKYRDQIPSPGLMVFPKPVTALEYTFSRSDPTSYAGYIEDLKKFLKPY
TLEEQKNLTVCPDGALFEQKGPVYVACQFPISLLQACSGMNDPDFGYSQGNPCILVKMNR
NEDIPNVAVYPHNGMIDLKYFPYYGKKLHVGYLQPLVAVQVSFAPNNTGKEVTVECKIDG
SANLKSQDDRDKFLGRVMFKITARAYVDGGRWLEGTKQPELGRRNPVGCGWRRWPKLQLE
HFRAPFRGDSSRTGPVADEVNVVGRIAAPMTFTFWGHAHGYALSRGKRGFADEIKKTVHL
AGGERKGAACGDLGWWEKQSGYCSCATKDEEFSPQDPREELAETLGPGLLPKSPFSPWIN
LLYCFYRPMTSEFMCRQVSRCGPSRQVTAALAGVILNQAVSEMFLEKLFPEVPEPVLPID
KPCRSQKTDSGGLHPETRLRTEARGFQAAAFSVLQQGASQPPWLREQGTPAMLCPLPPFP
ECPSVQRG

>gi568815595r:141852516_142095142|GENSCAN_predicted_CDS_5|1467_bp
atgtgggttatgcttcagactctcaacgatgaggttccaaaataccgtgaccagattcct
agcccaggactcatggtttttccaaaaccagtgaccgcattggaatatacattcagtagg
tctgatccaacttcgtatgcagggtacattgaagaccttaagaagtttctaaaaccatat
actttagaagaacagaagaacctcacagtctgtcctgatggagcactttttgaacagaag
ggtccagtttatgttgcatgtcagtttcctatttcattacttcaagcatgcagtggtatg
aatgatcctgattttggctattctcaaggaaacccttgtattcttgtgaaaatgaacaga
aatgaagatataccaaatgtagcagtttatcctcataatggaatgatagacttaaaatat
ttcccatattatgggaaaaaactgcatgttgggtatctacagccattggttgctgttcag
gtcagctttgctcctaacaacactgggaaagaagtaacagttgagtgcaagattgatgga
tcagccaacctaaaaagtcaggatgatcgtgacaagtttttgggacgagttatgttcaaa
atcacagcacgtgcatatgtggacggtgggcgatggctagaggggacgaaacagccagag
ctggggaggaggaacccagtggggtgtggctggcggagatggccaaaacttcagctggag
cacttcagagcacccttcagaggcgattcatcccgaactggacctgttgctgatgaagtc
aatgtggtaggcagaattgcagcccccatgaccttcacgttctggggccatgcccatggt
tatgctctatcacgtggcaagaggggctttgcagatgaaattaagaaaacagttcacctt
gctggtggggagagaaagggtgcagcgtgcggggacctgggctggtgggaaaagcagtcg
ggttattgttcgtgtgctacaaaggatgaggaattcagtccccaggatccacgggaggag
ctggctgagaccctggggcccggccttcttcccaagagtccattttccccttggattaac
ttactttattgtttctaccgtcccatgacttctgagtttatgtgtagacaagtctcccgg
tgcgggcccagcaggcaggtgacagccgcccttgcgggagtcatccttaaccaagcagtt
tcagaaatgtttcttgagaaactgtttccggaagtcccggagcctgtgttgcccattgac
aagccttgtcggtctcagaagacagactccgggggtctacatccagagacccggctgagg
actgaagcccggggtttccaagcggctgccttctccgtcctgcagcagggtgcgagtcaa
ccgccctggctaagggagcaaggaacccccgccatgctgtgtcccctccccccattcccc
gaatgcccgtctgttcaaagagggtga

>gi568815595r:141852516_142095142|GENSCAN_predicted_peptide_6|113_aa
MGEAGTLDSLSPMFQQVEHVDNQKAQKGVEQFRGQQVDPECWHFSLKLAPDDTASFPSFL
PDEGSICRSYCGRLPNARGLPDHCQLSLLSERPFQPLAETCFQESISVENAQW

>gi568815595r:141852516_142095142|GENSCAN_predicted_CDS_6|342_bp
atgggagaggccggaaccctagatagcttatctcctatgttccaacaagttgagcacgtg
gacaatcagaaggcacagaagggtgtggagcagttcaggggccagcaagtagacccagag
tgctggcacttctcactgaagcttgcacctgacgacaccgccagcttccccagtttcttg
ccagatgaaggctccatctgccggtcttactgtggacggctgccaaatgcccgggggctc
cctgatcactgccagctcagccttctctctgagaggcctttccagcctcttgctgaaact
tgctttcaggagagcatctcagtggaaaatgcacagtggtga

>gi568815595r:141852516_142095142|GENSCAN_predicted_peptide_7|520_aa
MNSVGREILKFLKREIPRHVARVGLPYLCEALNLILWAPLSCDKACIGVLVEDNVNTGPE
CQGMGDRTIKRGASGANETLAIPSWHCVKSAPRILAQCSLAIPGVAPVGPSIVAAPLEGT
GGEPWQCLSDAISSGCRVYKLRGCNQKASSLKQRINPHQALNLPALSFWTSQQPPEHDRK
RARKFIDSDFSESKRSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSN
NHLAADSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQR
RIERIKQKRAQLQELLLQQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTV
IDCSISSDKFEYLFNFDNTFEIHDDIEVLKRMGMSFGLESGKCSLEDLKLAKSLVPKALE
GYITDISTGPSWLNQGLLLNSTQSVSNLDLTTGATLPQSSVNQGLCLDAEVALATGQFLA
PNSHQSSSAASHCSESRGETPCSFNDEDEEDDEEDSSSPE

>gi568815595r:141852516_142095142|GENSCAN_predicted_CDS_7|1563_bp
atgaactcagtgggaagagaaatattaaagtttctgaagagggaaatccctcgccacgta
gctcgtgtaggcctcccttatctttgtgaagccttaaacttaattctgtgggccccacta
agttgtgataaagcatgcataggggttttggtagaagataacgttaacacaggcccagag
tgccaaggcatgggggacagaactatcaaaagaggggcttcaggcgctaatgaaaccctg
gcaatcccttcctggcactgtgtcaagtctgctccccgaattttggcacagtgctcctta
gccattccaggtgtggctccagtaggcccaagtatagtggctgctcctctagagggcaca
ggtggtgaaccttggcagtgtctgagtgatgccatctccagtgggtgcagagtgtacaag
ctgcggggatgcaaccagaaggcatcatctttgaagcagagaataaaccctcaccaggca
ctgaatctgccggcactttcattttggacctctcagcaacctccagaacatgatagaaaa
cgggctagaaaatttatagactctgatttttcagaaagtaaacgaagcaaaaaaggagat
aaaaatgggaaaggcttgagacacttttcaatgaaagtgtgtgagaaagttcaacgaaaa
ggtacaacatcgtacaatgaagtcgctgatgagctggtgtcagagttcaccaattcaaat
aaccatttggctgctgattcggcttatgatcagaagaacattaggcgaagagtttatgat
gctttaaatgtgctaatggcaatgaacataatttcaaaggaaaaaaaagaaatcaagtgg
attggcctgcctaccaattctgctcaggaatgtcagaatctggagatagagaagcagagg
cggatagaacggataaagcagaagcgggcccagctgcaagaacttctcctacagcaaatc
gctttcaaaaacctggtacagagaaatcgacaaaatgagcagcaaaaccagggcccgccg
gctctgaactctaccattcagctgccattcataatcatcaatacaagcagaaaaacagtc
atagattgcagcatctccagtgacaagtttgagtatcttttcaattttgacaacaccttt
gagatccatgatgacatagaagtactaaagcggatgggaatgtcgtttggcctggagtca
ggcaaatgctctctggaggatctgaaacttgcgaaatccctggtgccaaaggctttagaa
ggttatatcacagatatctccacaggaccttcttggttaaatcagggactacttctgaac
tctacccaatcagtttcaaatttagacctgaccactggtgccaccttaccccagtcaagt
gtaaaccaagggttatgcttggatgcagaagtggccttagcaactgggcagttcctggcc
ccaaacagtcaccagtccagcagtgcggcctctcactgctccgagtcccgaggcgagacc
ccctgttcgttcaatgatgaagatgaggaagatgatgaggaggattcctcctccccagaa
taa

>gi568815595r:141852516_142095142|GENSCAN_predicted_peptide_8|230_aa
MVPASTSGEGLGKSTVIAEGKGESASHVAREGAREMEGAMSMLRLQKRLASSVLCCGKKK
VWLDPNETSEIANANSRQQMRKLIKDELIISKPVDSPFLGLMPEKDLGPPEGRHSGIGKR
KGTANARMPEKVMWILRRLLRRYCESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLK
ADKARKKLLADQAEAPRSKTKEARKHGEERLQAKKEEIIKTLSKEEETKK

>gi568815595r:141852516_142095142|GENSCAN_predicted_CDS_8|693_bp
atggtgccagcatctacttccggtgagggccttgggaagtctacagtcatagcagaaggc
aaaggagagtcagcaagtcacgtggcaagagagggagcaagagagatggagggagccatg
agtatgctcaggcttcagaagaggctcgcctcttctgtcctctgctgtggcaagaagaag
gtctggttggacccgaatgagaccagtgaaattgccaatgccaactcccgtcagcagatg
cggaagctgatcaaagatgagctgatcatcagcaagcctgttgacagtccattcctgggc
ttgatgccggaaaaagaccttggcccgccggaaggcaggcacagtggcataggtaagcgg
aagggtacagccaatgcgcgaatgccagagaaggtcatgtggattctgcgccggctgctt
agaagatactgtgaatctaagaagattgatcgccatatgtatcacagcctgtacctgaag
gtgaagggaaatgtgttcaaaaacaagcggattctcatggagcacatccacaagctgaag
gcagacaaggcccgcaagaagctcctggctgaccaggctgaggcccccaggtctaagacc
aaggaagcacgcaagcacggtgaagaacgcctgcaggccaagaaggaggagatcatcaag
actttgtctaaggaggaagagaccaagaaataa

>gi568815595r:141852516_142095142|GENSCAN_predicted_peptide_9|108_aa
XWFDFHKCRSKRIYRSESQSNKRVSLSVLSCLEIGEGLHKYPCGHHHWDCTGSDLKPAQY
WVLLKALGLYNQQSRSRNAVEEPRLGIRDPKSPLGALPQLVAQLVPKL

>gi568815595r:141852516_142095142|GENSCAN_predicted_CDS_9|327_bp
ngttggtttgacttccacaaatgcagaagtaagaggatttatagatcagaatctcagtcc
aacaaaagagtgtctctgtctgtgctgagctgcctggagataggggaggggttacataag
tatccctgtggccaccaccactgggactgcactggttcagacctgaagccagcacaatac
tgggtcttgctcaaggccctggggctttacaatcagcagagtaggtccagaaatgctgtt
gaagagcccaggcttggaatcagggaccccaagagcccacttggtgctctacctcagctg
gtggctcagctggtacctaaactgtga