Result of FASTA (omim) for pF1KE0913
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0913, 254 aa
  1>>>pF1KE0913 254 - 254 aa - 254 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1798+/-0.000367; mu= 15.7304+/- 0.023
 mean_var=81.9146+/-16.396, 0's: 0 Z-trim(113.7): 109  B-trim: 33 in 1/57
 Lambda= 0.141708
 statistics sampled from 23062 (23183) to 23062 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.272), width:  16
 Scan time:  6.690

The best scores are:                                      opt bits E(85289)
NP_061984 (OMIM: 142860) HLA class II histocompati ( 254) 1707 358.6 6.2e-99
NP_291032 (OMIM: 142880) HLA class II histocompati ( 260)  998 213.7 2.7e-55
NP_001229453 (OMIM: 142880) HLA class II histocomp ( 260)  998 213.7 2.7e-55
NP_001229454 (OMIM: 142880) HLA class II histocomp ( 260)  998 213.7 2.7e-55
NP_002110 (OMIM: 142930) HLA class II histocompati ( 250)  943 202.4 6.4e-52
NP_002113 (OMIM: 146880,212750) HLA class II histo ( 255)  929 199.5 4.7e-51
NP_064440 (OMIM: 613503) HLA class II histocompati ( 255)  901 193.8 2.5e-49
XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA  ( 206)  714 155.5 6.9e-38
NP_006111 (OMIM: 142855) HLA class II histocompati ( 261)  339 78.9 9.8e-15
NP_002109 (OMIM: 142856) HLA class II histocompati ( 263)  263 63.4 4.7e-10
NP_002112 (OMIM: 142858) HLA class II histocompati ( 258)  254 61.5 1.7e-09
NP_001287719 (OMIM: 615161) HLA class II histocomp ( 264)  236 57.9 2.2e-08
XP_005249108 (OMIM: 615161) PREDICTED: HLA class I ( 275)  236 57.9 2.2e-08
XP_011512862 (OMIM: 615161) PREDICTED: HLA class I ( 256)  234 57.5 2.8e-08
NP_001230894 (OMIM: 126200,142857,180300,181000) m ( 266)  233 57.3 3.3e-08
NP_001185787 (OMIM: 615161) HLA class II histocomp ( 227)  228 56.2   6e-08
XP_011546040 (OMIM: 126200,142857,180300,181000) P ( 266)  225 55.6   1e-07
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325)  224 55.5 1.4e-07
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337)  224 55.5 1.4e-07
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348)  224 55.5 1.5e-07
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348)  224 55.5 1.5e-07
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260)  220 54.6 2.1e-07
NP_001230890 (OMIM: 123400,126200,212750,604305) H ( 269)  219 54.4 2.4e-07
NP_001230891 (OMIM: 123400,126200,212750,604305) H ( 261)  217 54.0 3.2e-07
NP_002114 (OMIM: 123400,126200,212750,604305) HLA  ( 261)  217 54.0 3.2e-07
XP_011512863 (OMIM: 615161) PREDICTED: HLA class I ( 219)  216 53.7 3.2e-07
NP_002116 (OMIM: 604776) major histocompatibility  ( 266)  215 53.6 4.3e-07
XP_011512864 (OMIM: 604776) PREDICTED: major histo ( 276)  215 53.6 4.4e-07
XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA  ( 246)  213 53.1 5.4e-07
XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA  ( 246)  213 53.1 5.4e-07
NP_072049 (OMIM: 612735) major histocompatibility  ( 266)  209 52.4   1e-06
NP_002115 (OMIM: 126200,142857,180300,181000) majo ( 266)  209 52.4   1e-06
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256)  208 52.1 1.1e-06
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228)  205 51.5 1.6e-06
NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168)  202 50.7 1.9e-06
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324)  205 51.6   2e-06
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346)  205 51.6 2.1e-06
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388)  205 51.7 2.3e-06
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420)  205 51.7 2.5e-06
XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435)  205 51.7 2.5e-06
NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442)  205 51.7 2.6e-06
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431)  198 50.3 6.8e-06
NP_620572 (OMIM: 104300,176100,176200,235200,61263 ( 242)  194 49.3 7.8e-06
NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246)  194 49.3 7.9e-06
NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334)  194 49.4 9.9e-06
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343)  194 49.4   1e-05
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365)  194 49.4 1.1e-05
NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365)  194 49.4 1.1e-05
NP_004039 (OMIM: 105200,109700,241600) beta-2-micr ( 119)  188 47.8 1.1e-05
NP_005505 (OMIM: 106300,142830,608579) major histo ( 362)  190 48.6 1.9e-05


>>NP_061984 (OMIM: 142860) HLA class II histocompatibili  (254 aa)
 initn: 1707 init1: 1707 opt: 1707  Z-score: 1897.1  bits: 358.6 E(85289): 6.2e-99
Smith-Waterman score: 1707; 100.0% identity (100.0% similar) in 254 aa overlap (1-254:1-254)

               10        20        30        40        50        60
pF1KE0 MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 MAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 STEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFIIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 STEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFIIK
              190       200       210       220       230       240

              250    
pF1KE0 GLRKSNAAERRGPL
       ::::::::::::::
NP_061 GLRKSNAAERRGPL
              250    

>>NP_291032 (OMIM: 142880) HLA class II histocompatibili  (260 aa)
 initn: 1002 init1: 976 opt: 998  Z-score: 1113.6  bits: 213.7 E(85289): 2.7e-55
Smith-Waterman score: 998; 59.9% identity (80.6% similar) in 247 aa overlap (8-254:14-260)

                     10        20        30        40        50    
pF1KE0       MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQSGEFMFDFDGD
                    .:  . .: :.: . . ::: .::   : :  .   .:::::.:: :
NP_291 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDED
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KE0 EIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEV
       :.:.::. ::::::.:::::.  ::::::.:::::. . ::. . .:::.:  :: ::::
NP_291 EMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEV
               70        80        90       100       110       120

          120       130       140       150       160       170    
pF1KE0 TVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFH
       ::. . :::: .::.::: :::: :::.::::: ::. :: ::.:..:::: :. :.:::
NP_291 TVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFH
              130       140       150       160       170       180

          180       190       200       210       220       230    
pF1KE0 YLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIG
       :: :.::.:: :::::::::::.::::::: . :  .:::::.:.:::::..::::::.:
NP_291 YLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVG
              190       200       210       220       230       240

          240       250    
pF1KE0 TIFIIKGLRKSNAAERRGPL
       :..:::.::...  . .: :
NP_291 TVLIIKSLRSGHDPRAQGTL
              250       260

>>NP_001229453 (OMIM: 142880) HLA class II histocompatib  (260 aa)
 initn: 1002 init1: 976 opt: 998  Z-score: 1113.6  bits: 213.7 E(85289): 2.7e-55
Smith-Waterman score: 998; 59.9% identity (80.6% similar) in 247 aa overlap (8-254:14-260)

                     10        20        30        40        50    
pF1KE0       MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQSGEFMFDFDGD
                    .:  . .: :.: . . ::: .::   : :  .   .:::::.:: :
NP_001 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDED
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KE0 EIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEV
       :.:.::. ::::::.:::::.  ::::::.:::::. . ::. . .:::.:  :: ::::
NP_001 EMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEV
               70        80        90       100       110       120

          120       130       140       150       160       170    
pF1KE0 TVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFH
       ::. . :::: .::.::: :::: :::.::::: ::. :: ::.:..:::: :. :.:::
NP_001 TVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFH
              130       140       150       160       170       180

          180       190       200       210       220       230    
pF1KE0 YLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIG
       :: :.::.:: :::::::::::.::::::: . :  .:::::.:.:::::..::::::.:
NP_001 YLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVG
              190       200       210       220       230       240

          240       250    
pF1KE0 TIFIIKGLRKSNAAERRGPL
       :..:::.::...  . .: :
NP_001 TVLIIKSLRSGHDPRAQGTL
              250       260

>>NP_001229454 (OMIM: 142880) HLA class II histocompatib  (260 aa)
 initn: 1002 init1: 976 opt: 998  Z-score: 1113.6  bits: 213.7 E(85289): 2.7e-55
Smith-Waterman score: 998; 59.9% identity (80.6% similar) in 247 aa overlap (8-254:14-260)

                     10        20        30        40        50    
pF1KE0       MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQSGEFMFDFDGD
                    .:  . .: :.: . . ::: .::   : :  .   .:::::.:: :
NP_001 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDED
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KE0 EIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEV
       :.:.::. ::::::.:::::.  ::::::.:::::. . ::. . .:::.:  :: ::::
NP_001 EMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEV
               70        80        90       100       110       120

          120       130       140       150       160       170    
pF1KE0 TVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFH
       ::. . :::: .::.::: :::: :::.::::: ::. :: ::.:..:::: :. :.:::
NP_001 TVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFH
              130       140       150       160       170       180

          180       190       200       210       220       230    
pF1KE0 YLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIG
       :: :.::.:: :::::::::::.::::::: . :  .:::::.:.:::::..::::::.:
NP_001 YLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVG
              190       200       210       220       230       240

          240       250    
pF1KE0 TIFIIKGLRKSNAAERRGPL
       :..:::.::...  . .: :
NP_001 TVLIIKSLRSGHDPRAQGTL
              250       260

>>NP_002110 (OMIM: 142930) HLA class II histocompatibili  (250 aa)
 initn: 1000 init1: 887 opt: 943  Z-score: 1053.1  bits: 202.4 E(85289): 6.4e-52
Smith-Waterman score: 943; 54.7% identity (78.9% similar) in 247 aa overlap (1-246:1-247)

               10        20        30         40        50         
pF1KE0 MAISGVPVLGFFIIAVLMSAQESWAIKEEHV-IIQAEFYLNPDQSGEFMFDFDGDEIFHV
       ::. .  ::::  . .:.: ::. : : .:.      :: .   ::.:  .:: ...: :
NP_002 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE0 DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN
       :. :.:.:::: ::: :: :. ::.::.::. ::.:.:...::: .   ::::.:::: .
NP_002 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL
       : ::: .::.:::..:.. :::.:.::::::. :: ::..: :  . ::::::::::::.
NP_002 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KE0 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII
       ::.::::::.::::::: :::.:::...: : :.. :..::::::..::::...::..::
NP_002 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII
              190       200       210       220       230       240

     240       250    
pF1KE0 KGLRKSNAAERRGPL
        :   :.        
NP_002 MGTYVSSVPR     
              250     

>>NP_002113 (OMIM: 146880,212750) HLA class II histocomp  (255 aa)
 initn: 931 init1: 913 opt: 929  Z-score: 1037.5  bits: 199.5 E(85289): 4.7e-51
Smith-Waterman score: 929; 53.3% identity (78.0% similar) in 255 aa overlap (1-254:1-255)

               10        20        30         40        50         
pF1KE0 MAISGVPVLGFFIIAVLMSAQESWAIKEEHVI-IQAEFYLNPDQSGEFMFDFDGDEIFHV
       : .. . .:: . ....::   .  :  .::    ...:     ::..  .::::: :.:
NP_002 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE0 DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN
       :. .:::.::  ::..:..:. :::: :.:: : ::.:: :: : :  ::  :::::...
NP_002 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL
       ::: : .::.:::..:.. :::::.::: ::. :: ::::: :: . :: : :. :: ::
NP_002 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KE0 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII
       ::....:::.:::::::.::::::: . :.:. : ::.:::::::.:::.::..::.:::
NP_002 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII
              190       200       210       220       230       240

     240       250    
pF1KE0 KGLRKSNAAERRGPL
       .:::. .:....:::
NP_002 QGLRSVGASRHQGPL
              250     

>>NP_064440 (OMIM: 613503) HLA class II histocompatibili  (255 aa)
 initn: 976 init1: 882 opt: 901  Z-score: 1006.6  bits: 193.8 E(85289): 2.5e-49
Smith-Waterman score: 901; 52.2% identity (77.3% similar) in 255 aa overlap (1-254:1-255)

               10        20        30         40        50         
pF1KE0 MAISGVPVLGFFIIAVLMSAQESWAIKEEHVI-IQAEFYLNPDQSGEFMFDFDGDEIFHV
       : .. . .:: . ....::   .  :  .::    ..:: .   ::..  .::::: :.:
NP_064 MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE0 DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN
       :.  :::::.:  :..: ::. :.:: :.:: : .::.: ..:: :  ::  :::::...
NP_064 DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL
        :: : .::.:::..:.. :::::.::: ::. :: ::::: :: . :: : :. :: ::
NP_064 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KE0 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII
       ::....:::.::::::::::::::: . :.:. : ::..::::::.:::.::..::.:::
NP_064 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII
              190       200       210       220       230       240

     240       250    
pF1KE0 KGLRKSNAAERRGPL
       .:::. .:....: :
NP_064 QGLRSVGASRHQGLL
              250     

>>XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA clas  (206 aa)
 initn: 716 init1: 698 opt: 714  Z-score: 801.2  bits: 155.5 E(85289): 6.9e-38
Smith-Waterman score: 714; 52.0% identity (75.0% similar) in 204 aa overlap (1-203:1-204)

               10        20        30         40        50         
pF1KE0 MAISGVPVLGFFIIAVLMSAQESWAIKEEHVI-IQAEFYLNPDQSGEFMFDFDGDEIFHV
       : .. . .:: . ....::   .  :  .::    ...:     ::..  .::::: :.:
XP_006 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE0 DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN
       :. .:::.::  ::..:..:. :::: :.:: : ::.:: :: : :  ::  :::::...
XP_006 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL
       ::: : .::.:::..:.. :::::.::: ::. :: ::::: :: . :: : :. :: ::
XP_006 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KE0 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII
       ::....:::.:::::::.::::::                                    
XP_006 PSADEIYDCKVEHWGLDQPLLKHWVE                                  
              190       200                                        

>>NP_006111 (OMIM: 142855) HLA class II histocompatibili  (261 aa)
 initn: 199 init1: 126 opt: 339  Z-score: 385.5  bits: 78.9 E(85289): 9.8e-15
Smith-Waterman score: 341; 28.9% identity (58.1% similar) in 246 aa overlap (13-239:14-252)

                10        20                   30        40        
pF1KE0  MAISGVPVLGFFIIAVLMSAQESWAIKE-----------EHVIIQAEFYLNPDQSGEFM
                    .. .:    .:::. :           .:..... .  . . :  . 
NP_006 MGHEQNQGAALLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLS
               10        20        30        40        50        60

       50        60        70        80        90       100        
pF1KE0 FDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKR-----SN
         .: :..:  :....  : :: ::. .:  . ::    :  ::   : : ..     ..
NP_006 EAYDEDQLFFFDFSQNTRVPRLPEFADWA--QEQGDAPAILFDKEFCEWMIQQIGPKLDG
               70        80          90       100       110        

           110       120       130       140       150       160   
pF1KE0 YTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFL
         :..   : . :.: .:.:. .::.:.::.... ::...:.: ... ::  : . : :.
NP_006 KIPVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPVE-GFGPT-FV
      120       130       140       150       160        170       

            170       180       190       200        210        220
pF1KE0 PREDHL-FRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAP-SPLP-ETTENVVC
          : : :. : :: : :   :...: : :       . .:   .: . :: .  :::.:
NP_006 SAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYW---VPRNALPSDLLENVLC
        180       190       200       210          220       230   

              230       240       250    
pF1KE0 ALGLTVGLVGIIIGTIFIIKGLRKSNAAERRGPL
       .... .:..:::.: ..::               
NP_006 GVAFGLGVLGIIVGIVLIIYFRKPCSGD      
           240       250       260       

>>NP_002109 (OMIM: 142856) HLA class II histocompatibili  (263 aa)
 initn: 241 init1: 137 opt: 263  Z-score: 301.5  bits: 63.4 E(85289): 4.7e-10
Smith-Waterman score: 263; 36.2% identity (59.1% similar) in 127 aa overlap (111-236:114-238)

               90       100       110       120       130       140
pF1KE0 AQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPP
                                     :: : :  ..: . ::: .: :..  : : 
NP_002 DTLMQRLRNGLQNCATHTQPFWGSLTNRTRPPSVQVAKTTPFNTREPVMLACYVWGFYPA
            90       100       110       120       130       140   

              150        160       170       180       190         
pF1KE0 VVNVTWLRNGKPVTTGVS-ETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPL
        :..:: .::: :    : . .  :  :  .. . .: . ::  :.: : ::: :  ::.
NP_002 EVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHTGAPEPI
           150       160       170       180       190       200   

     200       210       220       230       240       250         
pF1KE0 LKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFIIKGLRKSNAAERRGPL     
       :. :   . ::. .: .  : :. : .::. . .:.:                       
NP_002 LRDWT-PGLSPM-QTLKVSVSAVTLGLGLIIFSLGVISWRRAGHSSYTPLPGSNYSEGWH
            210        220       230       240       250       260 

NP_002 IS
         




254 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:28:27 2016 done: Sat Nov  5 04:28:28 2016
 Total Scan time:  6.690 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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