Result of FASTA (omim) for pF1KE0907
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0907, 217 aa
  1>>>pF1KE0907 217 - 217 aa - 217 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4090+/-0.000295; mu= 13.2220+/- 0.019
 mean_var=58.8153+/-11.818, 0's: 0 Z-trim(117.3): 28  B-trim: 82 in 1/56
 Lambda= 0.167236
 statistics sampled from 29245 (29273) to 29245 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.343), width:  16
 Scan time:  6.270

The best scores are:                                      opt bits E(85289)
NP_001959 (OMIM: 133440,615091) eukaryotic transla ( 217) 1498 369.1 3.1e-102
NP_001124150 (OMIM: 133440,615091) eukaryotic tran ( 237) 1460 360.0 1.9e-99
NP_001317946 (OMIM: 133440,615091) eukaryotic tran ( 245) 1460 360.0   2e-99
NP_001124151 (OMIM: 133440,615091) eukaryotic tran ( 248)  941 234.7 9.9e-62
NP_001263265 (OMIM: 605895) eukaryotic translation ( 234)  440 113.9 2.3e-25
NP_001317131 (OMIM: 605895) eukaryotic translation ( 240)  439 113.6 2.8e-25
NP_004837 (OMIM: 605895) eukaryotic translation in ( 245)  439 113.6 2.8e-25
NP_001269887 (OMIM: 605895) eukaryotic translation ( 236)  432 111.9 8.8e-25
NP_001263266 (OMIM: 605895) eukaryotic translation ( 189)  370 96.9 2.3e-20
NP_001317130 (OMIM: 605895) eukaryotic translation ( 200)  369 96.7 2.9e-20
NP_001317132 (OMIM: 605895) eukaryotic translation ( 191)  362 95.0 8.9e-20
NP_001128123 (OMIM: 609896) eukaryotic translation ( 224)  280 75.2 9.2e-14
NP_001269815 (OMIM: 609896) eukaryotic translation ( 118)  175 49.8 2.2e-06
XP_016861770 (OMIM: 609896) PREDICTED: eukaryotic  ( 118)  175 49.8 2.2e-06
NP_775495 (OMIM: 609896) eukaryotic translation in ( 118)  175 49.8 2.2e-06
NP_001128121 (OMIM: 609896) eukaryotic translation ( 118)  175 49.8 2.2e-06
XP_016861769 (OMIM: 609896) PREDICTED: eukaryotic  ( 118)  175 49.8 2.2e-06
XP_016861768 (OMIM: 609896) PREDICTED: eukaryotic  ( 118)  175 49.8 2.2e-06
XP_016861771 (OMIM: 609896) PREDICTED: eukaryotic  ( 118)  175 49.8 2.2e-06
XP_016861767 (OMIM: 609896) PREDICTED: eukaryotic  ( 118)  175 49.8 2.2e-06
NP_001128122 (OMIM: 609896) eukaryotic translation ( 118)  175 49.8 2.2e-06


>>NP_001959 (OMIM: 133440,615091) eukaryotic translation  (217 aa)
 initn: 1498 init1: 1498 opt: 1498  Z-score: 1956.4  bits: 369.1 E(85289): 3.1e-102
Smith-Waterman score: 1498; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)

               10        20        30        40        50        60
pF1KE0 MATVEPETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATVEPETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIG
              130       140       150       160       170       180

              190       200       210       
pF1KE0 RVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV
       :::::::::::::::::::::::::::::::::::::
NP_001 RVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV
              190       200       210       

>>NP_001124150 (OMIM: 133440,615091) eukaryotic translat  (237 aa)
 initn: 1460 init1: 1460 opt: 1460  Z-score: 1906.3  bits: 360.0 E(85289): 1.9e-99
Smith-Waterman score: 1460; 100.0% identity (100.0% similar) in 211 aa overlap (7-217:27-237)

                                   10        20        30        40
pF1KE0                     MATVEPETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQ
                                 ::::::::::::::::::::::::::::::::::
NP_001 MLDLTSRGQVGTSRRMAEAACSAHFLETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQ
               10        20        30        40        50        60

               50        60        70        80        90       100
pF1KE0 NRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEP
               70        80        90       100       110       120

              110       120       130       140       150       160
pF1KE0 MWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKG
              130       140       150       160       170       180

              170       180       190       200       210       
pF1KE0 DKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV
              190       200       210       220       230       

>>NP_001317946 (OMIM: 133440,615091) eukaryotic translat  (245 aa)
 initn: 1460 init1: 1460 opt: 1460  Z-score: 1906.0  bits: 360.0 E(85289): 2e-99
Smith-Waterman score: 1460; 100.0% identity (100.0% similar) in 211 aa overlap (7-217:35-245)

                                       10        20        30      
pF1KE0                         MATVEPETTPTPNPPTTEEEKTESNQEVANPEHYIK
                                     ::::::::::::::::::::::::::::::
NP_001 QNKKERKKMRAEDGENDAIKKQAESLRESQETTPTPNPPTTEEEKTESNQEVANPEHYIK
           10        20        30        40        50        60    

         40        50        60        70        80        90      
pF1KE0 HPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKD
           70        80        90       100       110       120    

        100       110       120       130       140       150      
pF1KE0 GIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNV
          130       140       150       160       170       180    

        160       170       180       190       200       210      
pF1KE0 RAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFV
          190       200       210       220       230       240    

        
pF1KE0 V
       :
NP_001 V
        

>>NP_001124151 (OMIM: 133440,615091) eukaryotic translat  (248 aa)
 initn: 1484 init1: 941 opt: 941  Z-score: 1229.2  bits: 234.7 E(85289): 9.9e-62
Smith-Waterman score: 1426; 87.5% identity (87.5% similar) in 248 aa overlap (1-217:1-248)

               10        20        30        40        50        60
pF1KE0 MATVEPETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATVEPETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQ
               70        80        90       100       110       120

              130                                      140         
pF1KE0 QRRSDLDRFWLET-------------------------------LLCLIGESFDDYSDDV
       :::::::::::::                               ::::::::::::::::
NP_001 QRRSDLDRFWLETRWDLAMLPRLVSNFWPQVILPLQPPKVLELQLLCLIGESFDDYSDDV
              130       140       150       160       170       180

     150       160       170       180       190       200         
pF1KE0 CGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGS
              190       200       210       220       230       240

     210       
pF1KE0 TTKNRFVV
       ::::::::
NP_001 TTKNRFVV
               

>>NP_001263265 (OMIM: 605895) eukaryotic translation ini  (234 aa)
 initn: 368 init1: 203 opt: 440  Z-score: 576.4  bits: 113.9 E(85289): 2.3e-25
Smith-Waterman score: 442; 33.8% identity (67.6% similar) in 207 aa overlap (18-213:29-229)

                          10        20          30            40   
pF1KE0            MATVEPETTPTPNPPTTEEEKTE--SNQEVANPEHYI----KHPLQNRW
                                   :.::::  .::  .. .  .    .::::  .
NP_001 MNNKFDALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNY
               10        20        30        40        50        60

            50             60        70        80        90        
pF1KE0 ALWFFKND-----KSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGI
       ..:. .       .:.... :.. :. : .::.:: .:.:.   ..:    :. :::.::
NP_001 TFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGI
               70        80        90       100       110       120

      100       110       120       130       140       150        
pF1KE0 EPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRA
       .:::::. :: ::.:.: :    :..  .: : . .: ..::.:   ....:::::.:: 
NP_001 KPMWEDDANKNGGKWIIRL----RKGLASRCWENLILAMLGEQFM-VGEEICGAVVSVRF
              130           140       150       160        170     

      160       170       180       190       200       210        
pF1KE0 KGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV 
       . : :.::.    .. ....:  . .. :.:::. .. :..:.:.  :..:. .:     
NP_001 QEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSI-KDNSSFRNTKITL
         180       190       200       210       220        230    

>>NP_001317131 (OMIM: 605895) eukaryotic translation ini  (240 aa)
 initn: 364 init1: 203 opt: 439  Z-score: 574.9  bits: 113.6 E(85289): 2.8e-25
Smith-Waterman score: 441; 32.9% identity (65.7% similar) in 210 aa overlap (18-216:24-228)

                     10        20          30            40        
pF1KE0       MATVEPETTPTPNPPTTEEEKTE--SNQEVANPEHYI----KHPLQNRWALWFF
                              :.::::  .::  .. .  .    .::::  ...:. 
NP_001 MSLKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYS
               10        20        30        40        50        60

       50             60        70        80        90       100   
pF1KE0 KND-----KSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWE
       .       .:.... :.. :. : .::.:: .:.:.   ..:    :. :::.::.::::
NP_001 RRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWE
               70        80        90       100       110       120

           110       120       130       140       150       160   
pF1KE0 DEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKI
       :. :: ::.:.: :    :..  .: : . .: ..::.:   ....:::::.:: . : :
NP_001 DDANKNGGKWIIRL----RKGLASRCWENLILAMLGEQFM-VGEEICGAVVSVRFQEDII
              130           140       150        160       170     

           170       180       190       200       210             
pF1KE0 AIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV      
       .::.    .. ....:  . .. :.:::. .. :..:.:.    :    .:..       
NP_001 SIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIKMPGRLGPQRLLFQNLWKP
         180       190       200       210       220       230     

NP_001 RLNVP
         240

>>NP_004837 (OMIM: 605895) eukaryotic translation initia  (245 aa)
 initn: 364 init1: 203 opt: 439  Z-score: 574.7  bits: 113.6 E(85289): 2.8e-25
Smith-Waterman score: 441; 32.9% identity (65.7% similar) in 210 aa overlap (18-216:29-233)

                          10        20          30            40   
pF1KE0            MATVEPETTPTPNPPTTEEEKTE--SNQEVANPEHYI----KHPLQNRW
                                   :.::::  .::  .. .  .    .::::  .
NP_004 MNNKFDALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNY
               10        20        30        40        50        60

            50             60        70        80        90        
pF1KE0 ALWFFKND-----KSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGI
       ..:. .       .:.... :.. :. : .::.:: .:.:.   ..:    :. :::.::
NP_004 TFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGI
               70        80        90       100       110       120

      100       110       120       130       140       150        
pF1KE0 EPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRA
       .:::::. :: ::.:.: :    :..  .: : . .: ..::.:   ....:::::.:: 
NP_004 KPMWEDDANKNGGKWIIRL----RKGLASRCWENLILAMLGEQFM-VGEEICGAVVSVRF
              130           140       150       160        170     

      160       170       180       190       200       210        
pF1KE0 KGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV 
       . : :.::.    .. ....:  . .. :.:::. .. :..:.:.    :    .:..  
NP_004 QEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIKMPGRLGPQRLLFQ
         180       190       200       210       220       230     

NP_004 NLWKPRLNVP
         240     

>>NP_001269887 (OMIM: 605895) eukaryotic translation ini  (236 aa)
 initn: 364 init1: 203 opt: 432  Z-score: 565.9  bits: 111.9 E(85289): 8.8e-25
Smith-Waterman score: 434; 34.0% identity (67.5% similar) in 197 aa overlap (18-203:29-220)

                          10        20          30            40   
pF1KE0            MATVEPETTPTPNPPTTEEEKTE--SNQEVANPEHYI----KHPLQNRW
                                   :.::::  .::  .. .  .    .::::  .
NP_001 MNNKFDALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNY
               10        20        30        40        50        60

            50             60        70        80        90        
pF1KE0 ALWFFKND-----KSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGI
       ..:. .       .:.... :.. :. : .::.:: .:.:.   ..:    :. :::.::
NP_001 TFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGI
               70        80        90       100       110       120

      100       110       120       130       140       150        
pF1KE0 EPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRA
       .:::::. :: ::.:.: :    :..  .: : . .: ..::.:   ....:::::.:: 
NP_001 KPMWEDDANKNGGKWIIRL----RKGLASRCWENLILAMLGEQFM-VGEEICGAVVSVRF
              130           140       150       160        170     

      160       170       180       190       200       210        
pF1KE0 KGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV 
       . : :.::.    .. ....:  . .. :.:::. .. :..:.:.               
NP_001 QEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIKAWEEFHGLVNSSG
         180       190       200       210       220       230     

NP_001 R
        

>>NP_001263266 (OMIM: 605895) eukaryotic translation ini  (189 aa)
 initn: 370 init1: 203 opt: 370  Z-score: 486.6  bits: 96.9 E(85289): 2.3e-20
Smith-Waterman score: 370; 36.2% identity (68.7% similar) in 163 aa overlap (51-213:29-184)

               30        40        50        60        70        80
pF1KE0 KTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQ
                                     .: :: . . .  ::   ::.:: .:.:. 
NP_001   MNNKFDALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSK-RKVEQFWRFYSHMV
                 10        20        30        40         50       

               90       100       110       120       130       140
pF1KE0 LSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGE
         ..:    :. :::.::.:::::. :: ::.:.: :    :..  .: : . .: ..::
NP_001 RPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRL----RKGLASRCWENLILAMLGE
        60        70        80        90           100       110   

              150       160       170       180       190       200
pF1KE0 SFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSH
       .:   ....:::::.:: . : :.::.    .. ....:  . .. :.:::. .. :..:
NP_001 QFM-VGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTH
            120       130       140       150       160       170  

              210        
pF1KE0 ADTATKSGSTTKNRFVV 
       .:.  :..:. .:     
NP_001 TDSI-KDNSSFRNTKITL
             180         

>>NP_001317130 (OMIM: 605895) eukaryotic translation ini  (200 aa)
 initn: 348 init1: 203 opt: 369  Z-score: 484.9  bits: 96.7 E(85289): 2.9e-20
Smith-Waterman score: 369; 34.9% identity (66.3% similar) in 166 aa overlap (51-216:29-188)

               30        40        50        60        70        80
pF1KE0 KTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQ
                                     .: :: . . .  ::   ::.:: .:.:. 
NP_001   MNNKFDALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSK-RKVEQFWRFYSHMV
                 10        20        30        40         50       

               90       100       110       120       130       140
pF1KE0 LSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGE
         ..:    :. :::.::.:::::. :: ::.:.: :    :..  .: : . .: ..::
NP_001 RPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRL----RKGLASRCWENLILAMLGE
        60        70        80        90           100       110   

              150       160       170       180       190       200
pF1KE0 SFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSH
       .:   ....:::::.:: . : :.::.    .. ....:  . .. :.:::. .. :..:
NP_001 QFM-VGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTH
            120       130       140       150       160       170  

              210                  
pF1KE0 ADTATKSGSTTKNRFVV           
       .:.    :    .:..            
NP_001 TDSIKMPGRLGPQRLLFQNLWKPRLNVP
            180       190       200




217 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:26:18 2016 done: Sat Nov  5 04:26:19 2016
 Total Scan time:  6.270 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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