Result of FASTA (omim) for pF1KB6873
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6873, 180 aa
  1>>>pF1KB6873 180 - 180 aa - 180 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8120+/-0.000345; mu= 14.9879+/- 0.021
 mean_var=56.9774+/-11.296, 0's: 0 Z-trim(114.1): 36  B-trim: 40 in 1/51
 Lambda= 0.169912
 statistics sampled from 23709 (23745) to 23709 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.278), width:  16
 Scan time:  5.610

The best scores are:                                      opt bits E(85289)
NP_002562 (OMIM: 173310) glycodelin isoform 1 prec ( 180) 1214 305.5 3.1e-83
NP_001018059 (OMIM: 173310) glycodelin isoform 1 p ( 180) 1214 305.5 3.1e-83
XP_011517051 (OMIM: 173310) PREDICTED: glycodelin  ( 180) 1214 305.5 3.1e-83
XP_011517049 (OMIM: 173310) PREDICTED: glycodelin  ( 204)  932 236.4 2.2e-62
XP_011517047 (OMIM: 173310) PREDICTED: glycodelin  ( 204)  932 236.4 2.2e-62
XP_011517048 (OMIM: 173310) PREDICTED: glycodelin  ( 204)  932 236.4 2.2e-62
NP_001018058 (OMIM: 173310) glycodelin isoform 2 p ( 158)  867 220.4 1.1e-57
XP_011517053 (OMIM: 173310) PREDICTED: glycodelin  ( 158)  867 220.4 1.1e-57
XP_011517054 (OMIM: 173310) PREDICTED: glycodelin  ( 143)  684 175.5 3.3e-44
XP_016870272 (OMIM: 173310) PREDICTED: glycodelin  ( 103)  681 174.6 4.2e-44
XP_011517050 (OMIM: 173310) PREDICTED: glycodelin  ( 182)  585 151.3 8.1e-37
XP_016870271 (OMIM: 173310) PREDICTED: glycodelin  ( 110)  285 77.6 7.4e-15
NP_001001676 (OMIM: 612903) epididymal-specific li ( 176)  171 49.8 2.8e-06
XP_016870201 (OMIM: 612903) PREDICTED: epididymal- ( 227)  171 49.8 3.5e-06
NP_001332863 (OMIM: 612902) epididymal-specific li ( 175)  136 41.2  0.0011
XP_016869761 (OMIM: 612902) PREDICTED: epididymal- ( 182)  136 41.2  0.0011
NP_848564 (OMIM: 612902) epididymal-specific lipoc ( 152)  134 40.7  0.0013
NP_001624 (OMIM: 176870) protein AMBP preproprotei ( 352)  138 41.9  0.0013
NP_055397 (OMIM: 164320) odorant-binding protein 2 ( 170)  123 38.0  0.0095


>>NP_002562 (OMIM: 173310) glycodelin isoform 1 precurso  (180 aa)
 initn: 1214 init1: 1214 opt: 1214  Z-score: 1615.3  bits: 305.5 E(85289): 3.1e-83
Smith-Waterman score: 1214; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
              130       140       150       160       170       180

>>NP_001018059 (OMIM: 173310) glycodelin isoform 1 precu  (180 aa)
 initn: 1214 init1: 1214 opt: 1214  Z-score: 1615.3  bits: 305.5 E(85289): 3.1e-83
Smith-Waterman score: 1214; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
              130       140       150       160       170       180

>>XP_011517051 (OMIM: 173310) PREDICTED: glycodelin isof  (180 aa)
 initn: 1214 init1: 1214 opt: 1214  Z-score: 1615.3  bits: 305.5 E(85289): 3.1e-83
Smith-Waterman score: 1214; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
              130       140       150       160       170       180

>>XP_011517049 (OMIM: 173310) PREDICTED: glycodelin isof  (204 aa)
 initn: 1203 init1: 932 opt: 932  Z-score: 1240.9  bits: 236.4 E(85289): 2.2e-62
Smith-Waterman score: 1156; 88.2% identity (88.2% similar) in 204 aa overlap (1-180:1-204)

               10        20        30        40        50        60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
               70        80        90       100       110       120

              130       140                               150      
pF1KB6 LFLCLQDTTTPIQSMMCQYL------------------------ARVLVEDDEIMQGFIR
       ::::::::::::::::::::                        ::::::::::::::::
XP_011 LFLCLQDTTTPIQSMMCQYLGKASGAPQLSWKPQGPRTDPASSTARVLVEDDEIMQGFIR
              130       140       150       160       170       180

        160       170       180
pF1KB6 AFRPLPRHLWYLLDLKQMEEPCRF
       ::::::::::::::::::::::::
XP_011 AFRPLPRHLWYLLDLKQMEEPCRF
              190       200    

>>XP_011517047 (OMIM: 173310) PREDICTED: glycodelin isof  (204 aa)
 initn: 1203 init1: 932 opt: 932  Z-score: 1240.9  bits: 236.4 E(85289): 2.2e-62
Smith-Waterman score: 1156; 88.2% identity (88.2% similar) in 204 aa overlap (1-180:1-204)

               10        20        30        40        50        60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
               70        80        90       100       110       120

              130       140                               150      
pF1KB6 LFLCLQDTTTPIQSMMCQYL------------------------ARVLVEDDEIMQGFIR
       ::::::::::::::::::::                        ::::::::::::::::
XP_011 LFLCLQDTTTPIQSMMCQYLGKASGAPQLSWKPQGPRTDPASSTARVLVEDDEIMQGFIR
              130       140       150       160       170       180

        160       170       180
pF1KB6 AFRPLPRHLWYLLDLKQMEEPCRF
       ::::::::::::::::::::::::
XP_011 AFRPLPRHLWYLLDLKQMEEPCRF
              190       200    

>>XP_011517048 (OMIM: 173310) PREDICTED: glycodelin isof  (204 aa)
 initn: 1203 init1: 932 opt: 932  Z-score: 1240.9  bits: 236.4 E(85289): 2.2e-62
Smith-Waterman score: 1156; 88.2% identity (88.2% similar) in 204 aa overlap (1-180:1-204)

               10        20        30        40        50        60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
               70        80        90       100       110       120

              130       140                               150      
pF1KB6 LFLCLQDTTTPIQSMMCQYL------------------------ARVLVEDDEIMQGFIR
       ::::::::::::::::::::                        ::::::::::::::::
XP_011 LFLCLQDTTTPIQSMMCQYLGKASGAPQLSWKPQGPRTDPASSTARVLVEDDEIMQGFIR
              130       140       150       160       170       180

        160       170       180
pF1KB6 AFRPLPRHLWYLLDLKQMEEPCRF
       ::::::::::::::::::::::::
XP_011 AFRPLPRHLWYLLDLKQMEEPCRF
              190       200    

>>NP_001018058 (OMIM: 173310) glycodelin isoform 2 precu  (158 aa)
 initn: 867 init1: 867 opt: 867  Z-score: 1156.4  bits: 220.4 E(85289): 1.1e-57
Smith-Waterman score: 1021; 87.8% identity (87.8% similar) in 180 aa overlap (1-180:1-158)

               10        20        30        40        50        60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
       ::::::::::::::::::::::::::::::::                      ::::::
NP_001 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPK----------------------APLRVH
               10        20        30                              

               70        80        90       100       110       120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
       40        50        60        70        80        90        

              130       140       150       160       170       180
pF1KB6 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
      100       110       120       130       140       150        

>>XP_011517053 (OMIM: 173310) PREDICTED: glycodelin isof  (158 aa)
 initn: 867 init1: 867 opt: 867  Z-score: 1156.4  bits: 220.4 E(85289): 1.1e-57
Smith-Waterman score: 1021; 87.8% identity (87.8% similar) in 180 aa overlap (1-180:1-158)

               10        20        30        40        50        60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
       ::::::::::::::::::::::::::::::::                      ::::::
XP_011 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPK----------------------APLRVH
               10        20        30                              

               70        80        90       100       110       120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
       40        50        60        70        80        90        

              130       140       150       160       170       180
pF1KB6 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
      100       110       120       130       140       150        

>>XP_011517054 (OMIM: 173310) PREDICTED: glycodelin isof  (143 aa)
 initn: 683 init1: 683 opt: 684  Z-score: 914.6  bits: 175.5 E(85289): 3.3e-44
Smith-Waterman score: 878; 78.9% identity (79.4% similar) in 180 aa overlap (1-180:1-143)

               10        20        30        40        50        60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
       :::::::::::::::::::::::::::::::::::::::::::                 
XP_011 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKIN-----------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KB6 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
                           .:::::::::::::::::::::::::::::::::::::::
XP_011 --------------------SRVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF
                               110       120       130       140   

>>XP_016870272 (OMIM: 173310) PREDICTED: glycodelin isof  (103 aa)
 initn: 681 init1: 681 opt: 681  Z-score: 912.8  bits: 174.6 E(85289): 4.2e-44
Smith-Waterman score: 681; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)

               10        20        30        40        50        60
pF1KB6 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNF
       :::::::::::::::::::::::::::::::::::::::::::                 
XP_016 ITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKIN                 
               70        80        90       100                    

              130       140       150       160       170       180
pF1KB6 LFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF




180 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:13:36 2016 done: Sat Nov  5 04:13:37 2016
 Total Scan time:  5.610 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com