Result of FASTA (omim) for
pF1KB6820
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6820, 186 aa
1>>>pF1KB6820 186 - 186 aa - 186 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7294+/-0.000458; mu= 16.8897+/- 0.029
mean_var=88.8060+/-19.083, 0's: 0 Z-trim(112.6): 296 B-trim: 2018 in 3/46
Lambda= 0.136098
statistics sampled from 21145 (21585) to 21145 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.253), width: 16
Scan time: 5.480
The best scores are: opt bits E(85289)
NP_060654 (OMIM: 616596) ADP-ribosylation factor-l ( 186) 1243 253.8 1.2e-67
NP_620150 (OMIM: 616597) ADP-ribosylation factor-l ( 186) 1182 241.8 4.8e-64
NP_001243058 (OMIM: 616597) ADP-ribosylation facto ( 147) 785 163.7 1.2e-40
NP_001654 (OMIM: 600464) ADP-ribosylation factor 6 ( 175) 418 91.8 6.6e-19
NP_001019397 (OMIM: 103180) ADP-ribosylation facto ( 181) 402 88.6 5.9e-18
NP_001019399 (OMIM: 103180) ADP-ribosylation facto ( 181) 402 88.6 5.9e-18
NP_001019398 (OMIM: 103180) ADP-ribosylation facto ( 181) 402 88.6 5.9e-18
NP_001649 (OMIM: 103180) ADP-ribosylation factor 1 ( 181) 402 88.6 5.9e-18
XP_005268913 (OMIM: 103190) PREDICTED: ADP-ribosyl ( 181) 399 88.1 8.9e-18
NP_001168 (OMIM: 603425) ADP-ribosylation factor-l ( 181) 399 88.1 8.9e-18
NP_001650 (OMIM: 103190) ADP-ribosylation factor 3 ( 181) 399 88.1 8.9e-18
NP_001653 (OMIM: 103188) ADP-ribosylation factor 5 ( 180) 387 85.7 4.6e-17
NP_001651 (OMIM: 601177) ADP-ribosylation factor 4 ( 180) 372 82.7 3.5e-16
XP_016871749 (OMIM: 604695) PREDICTED: ADP-ribosyl ( 182) 370 82.4 4.6e-16
NP_004302 (OMIM: 604695) ADP-ribosylation factor-l ( 182) 370 82.4 4.6e-16
NP_001658 (OMIM: 601175) ADP-ribosylation factor-l ( 184) 365 81.4 9.2e-16
NP_001167621 (OMIM: 608922,612291) ADP-ribosylatio ( 428) 358 80.4 4.1e-15
NP_878899 (OMIM: 608922,612291) ADP-ribosylation f ( 428) 358 80.4 4.1e-15
NP_612459 (OMIM: 609351) ADP-ribosylation factor-l ( 196) 345 77.5 1.5e-14
XP_005266310 (OMIM: 609351) PREDICTED: ADP-ribosyl ( 196) 345 77.5 1.5e-14
NP_001265222 (OMIM: 209900,268000,600151,608845,61 ( 186) 329 74.3 1.2e-13
NP_816931 (OMIM: 209900,268000,600151,608845,61357 ( 186) 329 74.3 1.2e-13
XP_016862800 (OMIM: 209900,268000,600151,608845,61 ( 186) 329 74.3 1.2e-13
NP_115522 (OMIM: 209900,268000,600151,608845,61357 ( 186) 329 74.3 1.2e-13
NP_005728 (OMIM: 604787) ADP-ribosylation factor-l ( 192) 328 74.1 1.5e-13
NP_001310442 (OMIM: 209900,268000,600151,608845,61 ( 193) 328 74.1 1.5e-13
NP_001269360 (OMIM: 604787) ADP-ribosylation facto ( 201) 328 74.2 1.5e-13
NP_001182325 (OMIM: 604786) ADP-ribosylation facto ( 200) 325 73.6 2.3e-13
NP_005729 (OMIM: 604786) ADP-ribosylation factor-l ( 200) 325 73.6 2.3e-13
NP_997625 (OMIM: 604786) ADP-ribosylation factor-l ( 200) 325 73.6 2.3e-13
NP_001032241 (OMIM: 604786) ADP-ribosylation facto ( 200) 325 73.6 2.3e-13
XP_016862801 (OMIM: 209900,268000,600151,608845,61 ( 159) 323 73.1 2.6e-13
NP_001310443 (OMIM: 209900,268000,600151,608845,61 ( 159) 323 73.1 2.6e-13
NP_079323 (OMIM: 614439) ADP-ribosylation factor-l ( 192) 323 73.2 2.9e-13
XP_016856722 (OMIM: 103180) PREDICTED: ADP-ribosyl ( 212) 322 73.0 3.5e-13
NP_001652 (OMIM: 600732) ADP-ribosylation factor-l ( 201) 321 72.8 3.9e-13
XP_011523084 (OMIM: 600732) PREDICTED: ADP-ribosyl ( 201) 321 72.8 3.9e-13
NP_001287997 (OMIM: 603425) ADP-ribosylation facto ( 135) 318 72.0 4.5e-13
XP_011510837 (OMIM: 608922,612291) PREDICTED: ADP- ( 403) 323 73.5 4.6e-13
XP_006719454 (OMIM: 103190) PREDICTED: ADP-ribosyl ( 137) 312 70.8 1e-12
XP_005248554 (OMIM: 601747) PREDICTED: E3 ubiquiti ( 398) 315 72.0 1.4e-12
NP_001647 (OMIM: 601747) E3 ubiquitin-protein liga ( 574) 315 72.2 1.7e-12
NP_036229 (OMIM: 608960) ADP-ribosylation factor-l ( 179) 307 70.0 2.4e-12
NP_150231 (OMIM: 601747) E3 ubiquitin-protein liga ( 546) 309 70.9 3.8e-12
NP_150230 (OMIM: 601747) E3 ubiquitin-protein liga ( 569) 305 70.2 6.7e-12
XP_016864933 (OMIM: 601747) PREDICTED: E3 ubiquiti ( 569) 305 70.2 6.7e-12
NP_001254477 (OMIM: 604699) ADP-ribosylation facto ( 201) 299 68.5 7.8e-12
NP_001254476 (OMIM: 604699) ADP-ribosylation facto ( 201) 299 68.5 7.8e-12
XP_016883065 (OMIM: 604699) PREDICTED: ADP-ribosyl ( 201) 299 68.5 7.8e-12
XP_011526784 (OMIM: 604699) PREDICTED: ADP-ribosyl ( 201) 299 68.5 7.8e-12
>>NP_060654 (OMIM: 616596) ADP-ribosylation factor-like (186 aa)
initn: 1243 init1: 1243 opt: 1243 Z-score: 1335.6 bits: 253.8 E(85289): 1.2e-67
Smith-Waterman score: 1243; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
130 140 150 160 170 180
pF1KB6 SKSRRS
::::::
NP_060 SKSRRS
>>NP_620150 (OMIM: 616597) ADP-ribosylation factor-like (186 aa)
initn: 1182 init1: 1182 opt: 1182 Z-score: 1270.8 bits: 241.8 E(85289): 4.8e-64
Smith-Waterman score: 1182; 91.9% identity (100.0% similar) in 186 aa overlap (1-186:1-186)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
:.::...:::::..:::::::::::::::::::::::::::::::.:::::::::::::.
NP_620 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
::::::::.::::::::::::::::::::.:::::.::::.::::::.::::::::::::
NP_620 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
:::::::::::::::.:::::.::::::::::::::::::::::::::::::::::::::
NP_620 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
130 140 150 160 170 180
pF1KB6 SKSRRS
::::::
NP_620 SKSRRS
>>NP_001243058 (OMIM: 616597) ADP-ribosylation factor-li (147 aa)
initn: 783 init1: 783 opt: 785 Z-score: 850.8 bits: 163.7 E(85289): 1.2e-40
Smith-Waterman score: 785; 85.2% identity (95.6% similar) in 135 aa overlap (1-134:1-135)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
:.::...:::::..:::::::::::::::::::::::::::::::.:::::::::::::.
NP_001 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
::::::::.::::::::::::::::::::.:::::.::::.::::::.::::::::::::
NP_001 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 QGIPVLVLG-NKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ
:::: : . :::
NP_001 QGIPESVCHPGPRDLLLLHLLQRKGQH
130 140
>>NP_001654 (OMIM: 600464) ADP-ribosylation factor 6 [Ho (175 aa)
initn: 415 init1: 358 opt: 418 Z-score: 460.4 bits: 91.8 E(85289): 6.6e-19
Smith-Waterman score: 418; 36.5% identity (72.9% similar) in 170 aa overlap (15-183:8-175)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
.: ..::.. ..::. .::::.. . :: : :::::::.. :
NP_001 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
: :: ...::.::: ..: .:..: :........: :::..:. .:.::: ... ..
NP_001 TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM
60 70 80 90 100 110
130 140 150 160 170
pF1KB6 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEK-DNIDITLQWLIQ
. .:...::.:::.:. ... ::..:. :.::. :: . :.. : :: .
NP_001 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP-SCATSGDGLYEGLTWLTS
120 130 140 150 160 170
180
pF1KB6 HSKSRRS
. ::
NP_001 NYKS
>>NP_001019397 (OMIM: 103180) ADP-ribosylation factor 1 (181 aa)
initn: 401 init1: 325 opt: 402 Z-score: 443.3 bits: 88.6 E(85289): 5.9e-18
Smith-Waterman score: 402; 31.6% identity (72.4% similar) in 174 aa overlap (12-185:9-181)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
:..:: :.::.. .:::. .::::.. . :.. :::.:::.. :
NP_001 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
:... .::.::: ..: .:..: ..........:. :::... .:.:: .: . .:
NP_001 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
. .::..::.:::::.. .. .:..: ... :. . :.. :.:: ..
NP_001 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ
120 130 140 150 160 170
pF1KB6 SKSRRS
....
NP_001 LRNQK
180
>>NP_001019399 (OMIM: 103180) ADP-ribosylation factor 1 (181 aa)
initn: 401 init1: 325 opt: 402 Z-score: 443.3 bits: 88.6 E(85289): 5.9e-18
Smith-Waterman score: 402; 31.6% identity (72.4% similar) in 174 aa overlap (12-185:9-181)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
:..:: :.::.. .:::. .::::.. . :.. :::.:::.. :
NP_001 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
:... .::.::: ..: .:..: ..........:. :::... .:.:: .: . .:
NP_001 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
. .::..::.:::::.. .. .:..: ... :. . :.. :.:: ..
NP_001 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ
120 130 140 150 160 170
pF1KB6 SKSRRS
....
NP_001 LRNQK
180
>>NP_001019398 (OMIM: 103180) ADP-ribosylation factor 1 (181 aa)
initn: 401 init1: 325 opt: 402 Z-score: 443.3 bits: 88.6 E(85289): 5.9e-18
Smith-Waterman score: 402; 31.6% identity (72.4% similar) in 174 aa overlap (12-185:9-181)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
:..:: :.::.. .:::. .::::.. . :.. :::.:::.. :
NP_001 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
:... .::.::: ..: .:..: ..........:. :::... .:.:: .: . .:
NP_001 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
. .::..::.:::::.. .. .:..: ... :. . :.. :.:: ..
NP_001 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ
120 130 140 150 160 170
pF1KB6 SKSRRS
....
NP_001 LRNQK
180
>>NP_001649 (OMIM: 103180) ADP-ribosylation factor 1 [Ho (181 aa)
initn: 401 init1: 325 opt: 402 Z-score: 443.3 bits: 88.6 E(85289): 5.9e-18
Smith-Waterman score: 402; 31.6% identity (72.4% similar) in 174 aa overlap (12-185:9-181)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
:..:: :.::.. .:::. .::::.. . :.. :::.:::.. :
NP_001 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
:... .::.::: ..: .:..: ..........:. :::... .:.:: .: . .:
NP_001 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
. .::..::.:::::.. .. .:..: ... :. . :.. :.:: ..
NP_001 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ
120 130 140 150 160 170
pF1KB6 SKSRRS
....
NP_001 LRNQK
180
>>XP_005268913 (OMIM: 103190) PREDICTED: ADP-ribosylatio (181 aa)
initn: 401 init1: 335 opt: 399 Z-score: 440.1 bits: 88.1 E(85289): 8.9e-18
Smith-Waterman score: 399; 31.6% identity (72.4% similar) in 174 aa overlap (12-185:9-181)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
..::. :.::.. .:::. .::::.. . :.. :::.:::.. :
XP_005 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
:... .::.::: ..: .:..: ..........:. :::... .:.:: .: . .:
XP_005 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
. .::..::.:::::.. .. .:..: ... :. . :.. :.:: ..
XP_005 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQ
120 130 140 150 160 170
pF1KB6 SKSRRS
:...
XP_005 LKNKK
180
>>NP_001168 (OMIM: 603425) ADP-ribosylation factor-like (181 aa)
initn: 391 init1: 338 opt: 399 Z-score: 440.1 bits: 88.1 E(85289): 8.9e-18
Smith-Waterman score: 399; 32.8% identity (71.8% similar) in 174 aa overlap (12-185:9-181)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
: ::: .::.. ..::. .::::.. . :. :::.:::.. :
NP_001 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
: :. ...::.::: .: .:. : ...:..:..:. ::..: :..:: .:.. .:
NP_001 TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEEL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
. ..:..::.:. .:. ... ....: :..::. .. : . ..: ...::..
NP_001 RKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVET
120 130 140 150 160 170
pF1KB6 SKSRRS
:::.
NP_001 LKSRQ
180
186 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:04:57 2016 done: Sat Nov 5 04:04:58 2016
Total Scan time: 5.480 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]