GENSCAN 1.0	Date run:  5-Nov-116	Time: 04:05:25

Sequence gi568815595f:5022466_5278710 : 256245 bp : 43.56% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  30999  31080   82  2  1   80   70    70 0.167   5.53
 1.02 Term +  44230  44354  125  2  2   23   48    98 0.011  -2.15
 1.03 PlyA +  46103  46108    6                               1.05

 2.05 PlyA -  48940  48935    6                               1.05
 2.04 Term -  58984  58692  293  2  2   55   38   444 0.613  31.61
 2.03 Intr -  60350  60164  187  2  1   15   34   167 0.096   3.26
 2.02 Intr -  61085  60977  109  1  1   46   31   176 0.176   7.99
 2.01 Init -  64560  64442  119  0  2   32   75    58 0.285  -1.43
 2.00 Prom -  78873  78834   40                              -5.76

 3.00 Prom +  88077  88116   40                              -5.76
 3.01 Init + 100001 100123  123  1  0   94   89   265 0.967  27.37
 3.02 Term + 100507 100548   42  0  0   43   47    71 0.370  -4.34
 3.03 PlyA + 101015 101020    6                               1.05

 4.02 PlyA - 101052 101047    6                               1.05
 4.01 Sngl - 122630 122136  495  2  0   52   50   242 0.861  12.85
 4.00 Prom - 157204 157165   40                              -1.86

 5.00 Prom + 162681 162720   40                              -6.36
 5.01 Init + 165341 165849  509  1  2   88   86   813 0.925  73.53
 5.02 Intr + 172744 172816   73  1  1   82   92    57 0.968   4.91
 5.03 Intr + 177127 177230  104  0  2   94   93   168 0.996  16.87
 5.04 Intr + 179318 179459  142  2  1   64   63   132 0.873   8.66
 5.05 Intr + 180501 180684  184  2  1  106   36    27 0.801  -1.34
 5.06 Intr + 182602 182776  175  2  1  107   75   112 0.999  10.80
 5.07 Intr + 184688 184808  121  2  1   86   68   179 0.999  16.20
 5.08 Intr + 185628 185798  171  2  0  115   79   129 0.995  14.84
 5.09 Intr + 187710 187783   74  2  2  110   34    39 0.574  -1.10
 5.10 Intr + 188655 188751   97  0  1   21   84    93 0.706   2.21
 5.11 Intr + 190854 191057  204  2  0   91   92   136 0.999  13.70
 5.12 Term + 193364 193453   90  1  0  114   39   113 0.917   6.72
 5.13 PlyA + 193636 193641    6                               1.05

 6.04 PlyA - 193841 193836    6                               1.05
 6.03 Term - 200673 200558  116  1  2    6   54   189 0.733   6.03
 6.02 Intr - 202278 202218   61  0  1  108  -18   103 0.325   0.01
 6.01 Init - 217723 217655   69  1  0   73   92    25 0.368   2.46
 6.00 Prom - 219189 219150   40                              -5.16

 7.00 Prom + 221695 221734   40                              -4.46
 7.01 Sngl + 221749 222084  336  0  0   76   44   153 0.377   5.73
 7.02 PlyA + 222808 222813    6                               1.05

 8.02 PlyA - 223270 223265    6                               1.05
 8.01 Term - 247079 246859  221  0  2   61   38   157 0.496   5.20

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  57917  57747  171  2  0  110   54   249 0.997  18.53
S.002 Init - 155396 155336   61  2  1   60   94    64 0.840   5.61


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595f:5022466_5278710|GENSCAN_predicted_peptide_1|68_aa
MDTEQIITPTTTVRDAKKEAPPTEQYKKEIVFYCPKAESSPWRNSSSTRTTLALCLSVEQ
AFIVDFYK

>gi568815595f:5022466_5278710|GENSCAN_predicted_CDS_1|207_bp
atggacactgaacaaattattaccccaacaaccacagtgagagatgccaagaaggaggca
cctccaacagagcagtataagaaagaaattgtcttttattgccccaaagcagaaagctcc
ccatggagaaactcatcctcaacaaggaccacccttgccctctgtctttccgtggagcag
gccttcattgtggacttctacaagtga

>gi568815595f:5022466_5278710|GENSCAN_predicted_peptide_2|235_aa
MYVDLQTLFFNFNEINFHIKQNEPLKIPTAKLLIEDKPGMKDHPNLIKNAKKPDIPKKLN
SPTQQLWYTHRKKDFSCAELMANKKDVPSAERMICRVASSGSCSPGRRRTPMCDQETKDY
EAELLRFSQETAPGGAAAVGKGQQLQEEQPRFLEIELACTLARRWSDLSEKAKYKTREQA
RQGVPGTQQAAQVIKRVQIWQQSIISNYLACFKNDRVKASKAMDVTWNPKEENLM

>gi568815595f:5022466_5278710|GENSCAN_predicted_CDS_2|708_bp
atgtatgtggatttacagactctattcttcaattttaatgaaattaactttcatataaag
caaaatgaacctctgaagattcccacagcaaagctgcttattgaagataaaccaggaatg
aaggatcatcccaacttaatcaagaatgccaagaagccagacatccccaagaagctcaac
tcccccacccagcagctgtggtacacccatcggaagaaggactttagttgcgcagagctc
atggccaacaagaaggatgttcccagcgcggagcgcatgatatgccgtgtggccagcagt
ggaagctgctctcccggaaggagaaggacgcctatgtgcgaccaggaaacaaaagattat
gaggcggaactgctgcgtttttctcaggagactgccccaggaggagcagcagcagtggga
aaggggcagcagctgcaggaggagcagcctaggttcttggagatcgagctggcctgcacg
ctggcccgaaggtggagtgacttgtctgagaaggccaagtacaagacccgagagcaagcc
aggcagggagtgccaggaactcagcaagccgcccaagtcatcaagagagtacagatctgg
caacagagcatcatcagcaactacctggcctgcttcaagaacgaccgggtgaaggcctcg
aaagccatggatgtgacctggaatcccaaggaggagaacctgatgtga

>gi568815595f:5022466_5278710|GENSCAN_predicted_peptide_3|54_aa
MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIAGGIWQIRQPYEKA

>gi568815595f:5022466_5278710|GENSCAN_predicted_CDS_3|165_bp
atgctggcgctcatctcccgcctgctggactggttccgttcgctcttctggaaggaagag
atggagctgacgctcgtggggctgcagtactcgggcaagaccaccttcgtcaatgtcatc
gcgggtgggatttggcaaatccgtcagccgtacgagaaagcgtaa

>gi568815595f:5022466_5278710|GENSCAN_predicted_peptide_4|164_aa
MAKRDNGYAITDGNKHSLCEKGRLPNGWLAQTCELYAFNQALKLLEGQEGTIFTNSKYAY
GVVHTFGKIWTVQGLINSRGKELVHGELVKQVLESLQLPAEVAIVRINGHQKGNTIEAVG
NKLADKAAMQASLEEEIRLFSLIPDIPKVVLRPQFTRKEKEELG

>gi568815595f:5022466_5278710|GENSCAN_predicted_CDS_4|495_bp
atggcaaagagagataatggttatgctatcactgatggaaataaacactccttatgtgag
aaaggtagattacctaatggttggttggcccaaacctgtgaattatatgcttttaaccag
gcgctaaagctccttgaaggccaagaaggcactatattcactaattctaaatatgcctat
ggggtggtacacacttttggaaaaatctggacagtgcagggcctaataaatagcagggga
aaagaattggtacatggggaactggtcaaacaggttttagaaagcctccagcttccagca
gaggttgccatagttcgcataaatggtcatcagaaaggtaacactatagaagctgtagga
aacaagcttgcagataaagctgctatgcaagcctccctggaggaagaaattagactattt
agcctgatcccagacatccctaaggtagtattaaggccccagtttaccagaaaggagaag
gaagaattaggatag

>gi568815595f:5022466_5278710|GENSCAN_predicted_peptide_5|647_aa
MQWRALVLGLVLLRLGLHGVLWLVFGLGPSMGFYQRFPLSFGFQRLRSPDGPASPTSGPV
GRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGPANWGYVLGGRGRGPDEYEKRYSG
AFPPQLRAQMRDLARGMFVFGYDNYMAHAFPQDELNPIHCRGRGPDRGDPSNLNINDVLG
NYSLTLVDALDTLAIMGNSSEFQKAVKLVINTVSFDKDSTVQVFEATIRIITDSKQPFGD
MTIKDYDNELLYMAHDLAVRLLPAFENTKTGIPYPRVNLKTGVPPDTNNETCTAGAGSLL
VEFGILSRLLGDSTFEWVARRAVKALWNLRSNDTGLLGNVVNIQTGHWVGKQSGLGAGLD
SFYEYLLKSYILFGEKEDLEMFNAAYQSIQNYLRRGREACNEGEGDPPLYVNVNMFSGQL
MNTWIDSLQAFFPGLQVLIGDVEDAICLHAFYYAIWKRYGALPERYNWQLQAPDVLFYPL
RPELVESTYLLYQATKNPFYLHVGMDILQSLEKYTKVKCGYATLHHVIDKSTEDRMESFF
LSETCKYLYLLFDEDNPVHKSGTRYMFTTEGHIVSVDEHLRELPWKEFFSEEGGQDQGGK
SVHRPKPHELKVINSSSNCNRVPDERRYSLPLKSIYMRQIDQMVGLI

>gi568815595f:5022466_5278710|GENSCAN_predicted_CDS_5|1944_bp
atgcaatggcgagcgctcgtcctggggctggtgctcctccggcttggcctccatggagta
ttgtggctcgtcttcgggctggggcccagcatgggcttctaccagcgctttccgctcagc
ttcggcttccagcgtctgaggagccccgacggccccgcgtcgcccacctcggggcccgtg
ggccggcctgggggggtatccgggccgtcgtggctgcagccgccggggaccggggcagcg
cagagcccgcgcaaggctccgcggcgtcctgggccggggatgtgcggcccagccaactgg
ggctacgtgctgggcggccggggccgcggcccggacgagtacgagaagcgctacagcggc
gccttccctccgcagctgcgtgcccagatgcgcgacctggcacggggcatgttcgtcttt
ggctacgacaactacatggctcacgccttcccccaggacgagctcaaccccatccactgc
cgcggccgtgggcccgaccgcggggacccttcaaatctgaacatcaatgatgtactaggg
aactactcattgactcttgttgatgcattggatacacttgcaataatgggaaattcatcc
gagttccagaaagccgtcaagttagtgatcaacacagtttcatttgacaaagattccacc
gtccaagtctttgaggccacgataagaataataactgactccaagcagccctttggtgac
atgacaattaaggactatgataatgagttgttatacatggcccatgacctggcggtgcgg
ctcctccctgcttttgaaaacaccaagacagggattccatatcctcgggtgaatctaaag
acaggagttcctcctgacaccaataatgagacatgcacagcgggagccggttccctcctg
gtggaatttgggattctgagtcgactcctgggggactccacatttgagtgggtggccaga
cgagcagtgaaagccctttggaacctccggagcaatgatacaggattactaggcaatgtc
gtgaacattcagacgggccactgggttggaaagcagagtggcctgggtgccgggctggac
tccttctatgaatacctcttgaaatcttacattctctttggagaaaaagaagacctagaa
atgtttaatgctgcatatcagagtattcagaactacttaagaagagggcgggaagcctgc
aatgaaggagaaggagaccctccactctatgtcaacgtgaacatgttcagtgggcagctg
atgaacacctggattgactctctgcaggcctttttccctggactgcaggtgctgatagga
gatgtggaagatgccatctgccttcatgccttctactatgccatatggaaacgatatggt
gccctccctgagagatataactggcagctgcaggcccctgacgttctcttctacccactg
agaccagagttagtggaatccacatatctcctctaccaggcaaccaagaatcccttctac
ctccatgtaggaatggatattctgcagagtctggaaaagtacacaaaagtcaagtgtggg
tacgccacgctgcatcacgtcattgacaagtccacagaagaccggatggagagcttcttt
ctcagtgagacctgtaaatatttgtatctgctgtttgatgaagacaatccagtacacaag
tctggaaccagatacatgttcacaacagagggacacattgtatctgtggatgagcatctt
cgggaattgccatggaaggaattcttctctgaagagggagggcaggaccaagggggaaag
tctgtgcacaggccgaaacctcatgagttaaaagtcatcaactccagctccaactgcaat
cgtgtacctgatgagaggaggtactccctgcccttaaagagcatctacatgcgacagatt
gaccagatggttggtttgatttga

>gi568815595f:5022466_5278710|GENSCAN_predicted_peptide_6|81_aa
MLIIPIFPVMMYYHDSVTAWFTKPTQREDEDEDLYDDPFPLMNSHFLREFDEPIIEGHPA
VQQSVFKAPHDERLYLEKVDV

>gi568815595f:5022466_5278710|GENSCAN_predicted_CDS_6|246_bp
atgctgatcattcctatctttcctgttatgatgtactaccatgattcagtcactgcctgg
ttcaccaagcctactcaacgtgaagatgaggatgaagacctctatgatgatccatttcca
cttatgaatagtcattttcttcgagaatttgacgagcccatcattgaagggcacccagcc
gtgcagcagagcgtcttcaaagctccccacgatgagagactttaccttgaaaaggtggat
gtttga

>gi568815595f:5022466_5278710|GENSCAN_predicted_peptide_7|111_aa
MGKDFMTKTPKAMATKAKIEKSDLIKLKNFCTAKETIIRVNRQPAEWEKIFAIYPSDKGL
ISRIYKELKQIHKKKKNNPIKKWAKDMNRRFSKEGIYVANKHEKKLIITGH

>gi568815595f:5022466_5278710|GENSCAN_predicted_CDS_7|336_bp
atgggcaaagactttatgactaaaacaccaaaagcaatggcaacaaaagccaaaattgag
aaatcggatctaattaaactaaagaacttctgcacagcaaaagaaactatcattagagtg
aacagacaacctgcagaatgggagaaaatttttgcaatctatccatctgacaaagggcta
atatccagaatctacaaggaacttaaacaaattcacaagaaaaaaaaaaacaaccccatt
aaaaagtgggcaaaagatatgaacagacgcttctcaaaagaaggcatttatgtggccaac
aaacatgaaaaaaagctcatcatcactggtcattag

>gi568815595f:5022466_5278710|GENSCAN_predicted_peptide_8|73_aa
XVEKGVGKSKVCGYWAWLVVAAMEEDPEIPSKELSDLSKKMPQNQTWTNKATTLATLSVP
SNSDLIRAQTLTL

>gi568815595f:5022466_5278710|GENSCAN_predicted_CDS_8|222_bp
naagtggagaaaggagttggaaagtcaaaggtatgtggctactgggcctggcttgtggta
gcagccatggaggaggacccagaaattccaagcaaggaattatctgacctaagcaagaag
atgcctcaaaatcagacttggaccaataaagccaccacacttgccactctatcagtgcct
tccaactcagacctcatacgtgctcaaactcttactctctaa