Result of FASTA (ccds) for pF1KB6760
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6760, 147 aa
  1>>>pF1KB6760 147 - 147 aa - 147 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7113+/-0.000537; mu= 15.1093+/- 0.033
 mean_var=60.6808+/-12.135, 0's: 0 Z-trim(113.4): 68  B-trim: 85 in 1/52
 Lambda= 0.164645
 statistics sampled from 13946 (14017) to 13946 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.431), width:  16
 Scan time:  1.720

The best scores are:                                      opt bits E(32554)
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7         ( 147) 1036 253.4 3.8e-68
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5         ( 147)  987 241.7 1.2e-64
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4          ( 148)  982 240.5 2.8e-64
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4          ( 147)  980 240.1 3.8e-64
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10         ( 147)  970 237.7   2e-63
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4          ( 149)  949 232.7 6.4e-62
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5         ( 118)  805 198.4 1.1e-51
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4         ( 118)  797 196.5 3.9e-51
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10        ( 109)  698 173.0 4.4e-44
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2         ( 207)  662 164.6 2.7e-41
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3          ( 193)  661 164.4 3.1e-41
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3          ( 201)  661 164.4 3.2e-41
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3         ( 160)  655 162.9 7.1e-41
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3          ( 176)  573 143.4 5.6e-35
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12         ( 152)  458 116.1 8.3e-27
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX          ( 152)  449 113.9 3.7e-26
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5           ( 152)  443 112.5 9.8e-26
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1          ( 197)  424 108.1 2.7e-24
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4          ( 200)  413 105.5 1.7e-23
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22        ( 154)  410 104.7 2.3e-23
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22        ( 212)  397 101.7 2.5e-22
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX          ( 119)  378 97.0 3.6e-21
CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19        ( 222)  370 95.3 2.2e-20
CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11         ( 153)  368 94.7 2.3e-20
CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22        ( 122)  366 94.2 2.7e-20
CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4          ( 157)  359 92.6   1e-19
CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20        ( 179)  356 91.9 1.9e-19
CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16         ( 158)  349 90.2 5.3e-19
CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20        ( 140)  328 85.2 1.5e-17
CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19         ( 183)  322 83.8 5.1e-17
CCDS5814.1 UBE2H gene_id:7328|Hs108|chr7           ( 183)  308 80.5 5.1e-16
CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17        ( 170)  303 79.3 1.1e-15
CCDS13714.1 UBE2G2 gene_id:7327|Hs108|chr21        ( 165)  299 78.3 2.1e-15
CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20        ( 150)  295 77.4 3.7e-15
CCDS627.1 UBE2U gene_id:148581|Hs108|chr1          ( 226)  294 77.2   6e-15
CCDS47874.2 UBE2W gene_id:55284|Hs108|chr8         ( 180)  285 75.0 2.2e-14
CCDS2523.1 UBE2F gene_id:140739|Hs108|chr2         ( 185)  285 75.0 2.3e-14
CCDS47875.2 UBE2W gene_id:55284|Hs108|chr8         ( 191)  285 75.1 2.3e-14
CCDS63175.1 UBE2F gene_id:140739|Hs108|chr2        ( 161)  277 73.1 7.6e-14
CCDS47044.1 UBE2K gene_id:3093|Hs108|chr4          ( 149)  263 69.7 7.2e-13
CCDS6546.1 UBE2R2 gene_id:54926|Hs108|chr9         ( 238)  259 69.0   2e-12
CCDS11540.2 UBE2Z gene_id:65264|Hs108|chr17        ( 354)  254 67.9 6.2e-12
CCDS12030.1 CDC34 gene_id:997|Hs108|chr19          ( 236)  249 66.6   1e-11
CCDS14.1 UBE2J2 gene_id:118424|Hs108|chr1          ( 259)  248 66.4 1.3e-11
CCDS33586.1 UBE2G2 gene_id:7327|Hs108|chr21        ( 137)  243 65.0 1.8e-11
CCDS5021.1 UBE2J1 gene_id:51465|Hs108|chr6         ( 318)  244 65.5   3e-11
CCDS63177.1 UBE2F gene_id:140739|Hs108|chr2        ( 153)  240 64.3 3.2e-11


>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7              (147 aa)
 initn: 1036 init1: 1036 opt: 1036  Z-score: 1336.9  bits: 253.4 E(32554): 3.8e-68
Smith-Waterman score: 1036; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)

               10        20        30        40        50        60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
               70        80        90       100       110       120

              130       140       
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
       :::::::::::::::::::::::::::
CCDS54 PEIAHTYKADREKYNRLAREWTQKYAM
              130       140       

>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5              (147 aa)
 initn: 987 init1: 987 opt: 987  Z-score: 1274.0  bits: 241.7 E(32554): 1.2e-64
Smith-Waterman score: 987; 93.2% identity (98.6% similar) in 147 aa overlap (1-147:1-147)

               10        20        30        40        50        60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
       ::::::.:::.:: :::::::::::::::.::::::::::::::::::::::::::::::
CCDS43 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
       :::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS43 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
               70        80        90       100       110       120

              130       140       
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
       ::::. ::.:::::::.::::::::::
CCDS43 PEIARIYKTDREKYNRIAREWTQKYAM
              130       140       

>>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4               (148 aa)
 initn: 982 init1: 982 opt: 982  Z-score: 1267.6  bits: 240.5 E(32554): 2.8e-64
Smith-Waterman score: 982; 92.5% identity (98.6% similar) in 147 aa overlap (1-147:1-147)

               10        20        30        40        50        60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
       ::::::.:::.:: :::::::::::::::.::::::::::::::::::::::::::::::
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
       :::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS36 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
               70        80        90       100       110       120

              130       140        
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM 
       ::::. ::.::.::::::::::.:::: 
CCDS36 PEIARIYKTDRDKYNRLAREWTEKYAML
              130       140        

>>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4               (147 aa)
 initn: 980 init1: 980 opt: 980  Z-score: 1265.0  bits: 240.1 E(32554): 3.8e-64
Smith-Waterman score: 980; 91.8% identity (98.6% similar) in 147 aa overlap (1-147:1-147)

               10        20        30        40        50        60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
       ::::::.:::.:: :::::::::::::::.::::::::::::::::::::::::::::::
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
       :::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS36 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
               70        80        90       100       110       120

              130       140       
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
       ::::. ::.::.::::..:::::::::
CCDS36 PEIARIYKTDRDKYNRISREWTQKYAM
              130       140       

>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10              (147 aa)
 initn: 970 init1: 970 opt: 970  Z-score: 1252.2  bits: 237.7 E(32554): 2e-63
Smith-Waterman score: 970; 91.8% identity (97.3% similar) in 147 aa overlap (1-147:1-147)

               10        20        30        40        50        60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
       ::::::::::.::::::::.:::::::::::::::::::: :: :::::::::.::::::
CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
       ::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
               70        80        90       100       110       120

              130       140       
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
       :.::. ::.:.::::: ::::::::::
CCDS72 PDIAQIYKSDKEKYNRHAREWTQKYAM
              130       140       

>>CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4               (149 aa)
 initn: 949 init1: 949 opt: 949  Z-score: 1225.2  bits: 232.7 E(32554): 6.4e-62
Smith-Waterman score: 949; 90.3% identity (97.9% similar) in 144 aa overlap (4-147:6-149)

                 10        20        30        40        50        
pF1KB6   MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPT
            : ..:::.:: :::::::::::::::.::::::::::::::::::::::::::::
CCDS36 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB6 DYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDP
       :::::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::
CCDS36 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
               70        80        90       100       110       120

      120       130       140       
pF1KB6 LVPEIAHTYKADREKYNRLAREWTQKYAM
       ::::::. ::.::.::::..:::::::::
CCDS36 LVPEIARIYKTDRDKYNRISREWTQKYAM
              130       140         

>>CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5              (118 aa)
 initn: 805 init1: 805 opt: 805  Z-score: 1041.7  bits: 198.4 E(32554): 1.1e-51
Smith-Waterman score: 805; 94.1% identity (99.2% similar) in 118 aa overlap (30-147:1-118)

               10        20        30        40        50        60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
                                    .::::::::::::::::::::::::::::::
CCDS47                              MFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
                                            10        20        30 

               70        80        90       100       110       120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
       :::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS47 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
              40        50        60        70        80        90 

              130       140       
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
       ::::. ::.:::::::.::::::::::
CCDS47 PEIARIYKTDREKYNRIAREWTQKYAM
             100       110        

>>CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4              (118 aa)
 initn: 797 init1: 797 opt: 797  Z-score: 1031.5  bits: 196.5 E(32554): 3.9e-51
Smith-Waterman score: 797; 92.4% identity (99.2% similar) in 118 aa overlap (30-147:1-118)

               10        20        30        40        50        60
pF1KB6 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
                                    .::::::::::::::::::::::::::::::
CCDS75                              MFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
                                            10        20        30 

               70        80        90       100       110       120
pF1KB6 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
       :::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS75 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
              40        50        60        70        80        90 

              130       140       
pF1KB6 PEIAHTYKADREKYNRLAREWTQKYAM
       ::::. ::.::.::::..:::::::::
CCDS75 PEIARIYKTDRDKYNRISREWTQKYAM
             100       110        

>>CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10             (109 aa)
 initn: 695 init1: 695 opt: 698  Z-score: 904.8  bits: 173.0 E(32554): 4.4e-44
Smith-Waterman score: 698; 90.0% identity (95.5% similar) in 110 aa overlap (38-147:1-109)

        10        20        30        40        50        60       
pF1KB6 KELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV
                                     : : :: :::::::::.::::::::::::.
CCDS73                               MTP-DSAYQGGVFFLTVHFPTDYPFKPPKI
                                              10        20         

        70        80        90       100       110       120       
pF1KB6 AFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::. :
CCDS73 AFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIY
      30        40        50        60        70        80         

       130       140       
pF1KB6 KADREKYNRLAREWTQKYAM
       :.:.::::: ::::::::::
CCDS73 KSDKEKYNRHAREWTQKYAM
      90       100         

>>CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2              (207 aa)
 initn: 662 init1: 662 opt: 662  Z-score: 854.8  bits: 164.6 E(32554): 2.7e-41
Smith-Waterman score: 662; 64.3% identity (84.6% similar) in 143 aa overlap (4-146:64-206)

                                          10        20        30   
pF1KB6                            MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHW
                                     :::::::...  ::: .::::: ::....:
CCDS22 EQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEW
            40        50        60        70        80        90   

            40        50        60        70        80        90   
pF1KB6 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQW
       ..::.::  : :.:::::: : : .:::::::::.: :.::: ::::.: ::::::...:
CCDS22 RSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW
           100       110       120       130       140       150   

           100       110       120       130       140       
pF1KB6 SPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM
       :::::.::::::::::: : :: ::::  ::  : ..: ...:.::.::..:: 
CCDS22 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYAT
           160       170       180       190       200       




147 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:01:02 2016 done: Sat Nov  5 04:01:02 2016
 Total Scan time:  1.720 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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