GENSCAN 1.0	Date run:  5-Nov-116	Time: 03:31:44

Sequence gi568815586r:10709140_10910075 : 200936 bp : 37.23% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.12 Intr -    975    769  207  0  0   59   98   300 0.905  26.45
 1.11 Intr -   4194   4072  123  0  0  103   63   295 0.982  28.36
 1.10 Intr -   6644   6555   90  2  0   99  100   135 0.998  15.07
 1.09 Intr -   8569   8504   66  1  0   61   55    90 0.691   1.18
 1.08 Intr -  13422  12928  495  0  0   56   43   406 0.669  25.16
 1.07 Intr -  13564  13516   49  0  1   49   99    42 0.390  -0.84
 1.06 Intr -  13812  13711  102  2  0   60  109    94 0.104   7.07
 1.05 Intr -  22020  21879  142  1  1  100   91    34 0.018   3.39
 1.04 Intr -  23933  23832  102  0  0  112   58    64 0.122   5.03
 1.03 Intr -  31131  31092   40  0  1   57   87    23 0.036  -4.02
 1.02 Intr -  32185  32042  144  1  0   73   69    82 0.081   4.36
 1.01 Init -  36188  35709  480  2  0   78   86   147 0.055   8.91
 1.00 Prom -  37836  37797   40                              -6.15

 2.12 PlyA -  39382  39377    6                               1.05
 2.11 Term -  41024  40848  177  2  0   41   32   167 0.008   3.10
 2.10 Intr -  46567  46042  526  0  1   43   39   280 0.000  10.62
 2.09 Intr -  55139  54998  142  0  1   85   77    53 0.100   2.39
 2.08 Intr -  55580  55292  289  2  1   21   31   215 0.020   5.00
 2.07 Intr -  65268  65155  114  0  0   79   89    89 0.013   7.82
 2.06 Intr -  82756  82226  531  1  0   51   39   218 0.010   5.40
 2.05 Intr -  83310  83148  163  2  1    2   38   198 0.001   5.26
 2.04 Intr -  89098  88984  115  2  1   33   31   101 0.002  -2.51
 2.03 Intr - 100320 100138  183  1  0  108  -11   164 0.020   7.34
 2.02 Intr - 107008 106855  154  1  1   74   24   115 0.586   2.42
 2.01 Init - 107853 107701  153  0  0   67   81    55 0.361   2.74
 2.00 Prom - 127237 127198   40                              -0.35

 3.04 PlyA - 127325 127320    6                               1.05
 3.03 Term - 138228 137924  305  1  2   51   33   238 0.401   8.95
 3.02 Intr - 139268 139233   36  0  0  111   99    23 0.748   3.02
 3.01 Init - 140298 140235   64  0  1   66   53   102 0.855   4.18
 3.00 Prom - 140370 140331   40                              -5.35

 4.00 Prom + 143013 143052   40                              -6.25
 4.01 Sngl + 144303 144800  498  2  0   90   55   318 0.879  24.49
 4.02 PlyA + 148123 148128    6                               1.05

 5.00 Prom + 150127 150166   40                              -3.45
 5.01 Init + 154834 154926   93  0  0   95   65    46 0.194   3.43
 5.02 Term + 168976 169131  156  0  0   67   38   126 0.344   2.45
 5.03 PlyA + 169657 169662    6                               1.05

 6.07 PlyA - 169933 169928    6                               1.05
 6.06 Term - 173559 173096  464  1  2   84   33   577 0.981  46.03
 6.05 Intr - 175136 175015  122  1  2   51  116    95 0.129   7.82
 6.04 Intr - 182786 182731   56  2  2  115   32    35 0.030  -2.54
 6.03 Intr - 191148 191075   74  1  2    7  113   100 0.384   2.61
 6.02 Intr - 192215 192098  118  2  1   54   61   101 0.555   3.12
 6.01 Init - 200159 199971  189  2  0   64   83    68 0.516   2.96

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  46533  45880  654  0  0   91   36   293 0.876  20.32
S.002 Term +  68179  68274   96  0  0  108   38   113 0.970   5.29
S.003 Sngl -  83282  82989  294  2  0   51   38   265 0.835  13.25
S.004 Term - 100320  99998  323  1  2  108   44   161 0.810   7.70
S.005 Init - 175078 175015   64  1  1   63  116    72 0.847   8.99


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:10709140_10910075|GENSCAN_predicted_peptide_1|680_aa
MPSLTTPIKIVLEVLARAIRQEKEIKSIQLGKEEVKLSLFTDGMIIYLENPTVSAQNLLK
LISNFGKVSGYKINVQKSQALLYTSNRQTESQITSKLPFTIATKRIKYLGIQLTRDVKDL
FKENYKPMLNKIKEDTNKWKNIPDSWIGRINIVKMHILPKLGPLQVLQRLVRNQKFTISN
VKRSFEKLGEAVEKRYSVNTVLKKESSQRSDNKQAKLTRVVVPSNDWTQLEARAKKPVEA
VQSGSFSGAQSREKNGNERDPLITKFTLNRRWSPCGAKGISNPNPAFSRQTSNSNSTVAY
FCRKPRWGRGPRSHGHRGRRLFSHRRRQRRRGEKSSRGLRVPSAGRLPCRRSQTGTVADS
RGGKCLRLEKKGEAVWERGPWVGMDVGEGPTRGPGALGSLLGIWERRAFPLGKRRALEGD
GEGKIEKLLARKGQVSVPDALPTWAWERRHAPVGHMPAKRCCNRLRETWVLVPRLPPPLC
AHGCKQPFSVHQWLHASLFPDCGNARGVAAEKTLSEVGVLVKAPLSEQLSIEVNSAEKQI
TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG
YYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPY
HVGQTFDRRSRVLPHPNRIQ

>gi568815586r:10709140_10910075|GENSCAN_predicted_CDS_1|2040_bp
atgccctctctcaccactcctattaaaatagtgttggaagttctggccagggcaatcagg
caagagaaagaaataaagagtattcaattaggaaaagaggaagtcaaattgtccctgttt
acagatggcatgattatatacttagaaaaccccactgtctcagcccaaaatctccttaag
ctgataagcaacttcggcaaagtctcaggatacaaaatcaatgtgcaaaaatcacaagca
ttactatacaccagtaacagacaaacagagagccaaatcacgagtaaactcccattcaca
attgctacaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctc
ttcaaggagaactacaaaccaatgctcaacaaaataaaagaggacacaaacaaatggaag
aacattccagattcatggataggaagaatcaatattgtgaaaatgcacatactgcccaag
ttgggccctcttcaggtgctgcagagattggtgagaaaccagaagttcacaatcagtaat
gtcaaaagaagctttgagaagctgggagaggctgtggaaaaaaggtacagtgtgaacaca
gtcttgaaaaaagaaagctctcagaggagtgataacaaacaagccaagttaactagagtt
gtagtgccctccaatgattggacccagctggaagccagagcaaagaagcctgtagaagct
gttcaaagtggttcattctctggggcacagagcagggagaaaaatggaaatgagagggat
cctctgattaccaaatttactctcaacaggcgttggtccccatgtggagcaaaaggcatc
agtaaccccaatccagctttttctcgacagacttctaactcaaacagcactgtggcctat
ttctgcaggaaaccccggtggggacgcggcccccgcagccacgggcaccgcggccgccgc
ctctttagccaccgccgccggcagcgaagacgcggagaaaaaagttctcggggtctccgg
gtccccagcgctggccgcctcccttgccggcgctcccagacgggcactgttgcggattcg
cgtggtggaaaatgcctgcgtttggagaagaaaggagaggcagtctgggagaggggacct
tgggtagggatggatgtaggggaaggaccgacacgtgggcctggcgctttggggtccttg
cttgggatctgggaaaggagagcatttcctttggggaagaggagggcgctagaaggagac
ggggagggaaagatagaaaagcttcttgccaggaagggtcaggtgtctgtccctgacgcc
cttcccacatgggcatgggaaagacgccatgctcctgttggccacatgccagcaaagaga
tgttgcaatcgtctccgggaaacttgggtcttagtcccacgtcttcctccccctctctgt
gcccacggctgcaaacagccattcagtgtccaccaatggctacacgcttccctcttcccg
gactgtgggaacgcacgtggtgtagcagctgaaaaaactttgtcggaagtgggggtattg
gttaaagctcctctgtcagagcagctctcaattgaagtaaatagcgcagagaagcagata
actgccatcaagaagaataacccacggaaatatctgcgcagtgtaggagatggagaaact
gtagagtttgatgtggttgaaggagagaagggtgcagaagctgccaatgtgactggcccg
gatggagttcctgtggaagggagtcgttacgctgcagatcggcgccgttacagacgtggc
tactatggaaggcgccgtggccctccccggaattacgctggggaggaggaggaggaaggg
agcggcagcagtgaaggatttgacccccctgccactgataggcagttctctggggcccgg
aatcagctgcgccgcccccagtatcgccctcagtaccggcagcggcggttcccgccttac
cacgtgggacagacctttgaccgtcgctcacgggtcttaccccatcccaacagaatacag

>gi568815586r:10709140_10910075|GENSCAN_predicted_peptide_2|848_aa
MEFHDATLSCFWVPVVLEPEPTELGVVALGQIWMQPKVQPGVIMTPREAPKETGCSQGAA
CPSCIPQVLRILHFQAEEAGLEHPSISSAFSSHQTLLTRAWDFRHTKQIRLHATGFRDPS
TEAHMRAIKAVIIFLLLLIVYYPVFLVMTSSALIPQGKLVLMIELRVTKAFESRTSSTLM
EAMVSISLDAVRTSDTVLYGLRGLEYSEDKKMWESLELPRDWLNGFDQNADSDMNNKVRV
EVVSDEDEELLGTEVKPRDLVPCIPAAPAMAKRGQGTAQVMASGGTSPKFWQLPCGVESA
GAQKSIIEVWEPPPRFQRMCGNAWMSRQRCAAGAGPSWRTSAKAVWKGNVGLETSHRVPT
WALPSGAVRRGSPSSTPQNGRSTNNLHHVPGKTADTQHQPVKAVKREVVPCKPTEAELPR
AVAAHLLHQHNLDNPDFVQGNNVPSGSQVGAFRNSLLADLTVTALELPNYSVRSHGPGSR
LAHIDSDSRSAQLQTGSHDTSVQASPWNPTLQIYLNKPRVQNCYSTSQYQADLMDPSSRT
TATDPGSRTDFVDPGPKTQAYYYIMDPGARPAQILIQTPNQSLQRFCYMAHTESLDELTG
EGFSLLKPVYKEWKRDLVPCIPATPAMTKRGHGTARAIASEGGSPKPWQLPCGIEPAGPQ
KSIIKVWEPPPRFQRMYGNSWMSRQKLAAGSGPSWRTSARAVWKGNVRLEPPHRVPTGTP
PSGAVRIGPPSSRPQNGRSTDSLLHVPGKVTDTQHQPMKAARNGTIPCKATGAELPKAMG
AHFLHQHDLDKLAKRVKAVHKAMTVMAMIPTGEPTVIQTFGNPHSNAKETLPFSSSFYRK
RTRKGEIK

>gi568815586r:10709140_10910075|GENSCAN_predicted_CDS_2|2547_bp
atggaattccatgatgccactctttcctgcttctgggtccctgtagtcttagagccagag
cccacagagctgggggtggtggcattggggcagatctggatgcagcccaaggtacagcca
ggagtgattatgactcctagagaagctcctaaggagactggatgttctcaaggagcagcc
tgtccatcttgcatcccccaggttctccggattctccatttccaagcagaagaagcagga
ctggagcacccttccatatcatcagccttctcctcgcaccagaccttactcaccagggcc
tgggactttagacacaccaagcagattcgactgcatgctacagggttcagagaccccagt
acagaggcccacatgagggccataaaggcagtgatcatctttctgctcctcctcatcgtg
tactacccagtctttcttgttatgacctctagcgctctgattcctcagggaaaattagtg
ttgatgattgagctcagggtcaccaaagcctttgagagcaggactagcagcaccttgatg
gaagccatggtatccatctcccttgatgctgtaagaacctcagacacagtcctttatggg
ttgagaggtttggagtactcagaagacaaaaagatgtgggagagtttggaacttcctaga
gactggttgaatggctttgaccaaaatgctgatagcgatatgaacaataaggtccgggtt
gaggtggtctcagatgaagatgaggaacttttgggaactgaagtaaagcctagggactta
gtgccctgcatcccagctgctccagccatggctaaaaggggccaaggtacagctcaggtc
atggcttcagggggtacaagccccaagttttggcagcttccatgtggtgttgagtctgca
ggtgcacagaagtcaataattgaggtttgggaacctccacctagatttcagagaatgtgt
ggaaatgcgtggatgtccaggcagaggtgtgctgcaggggctgggccctcatggagaact
tctgctaaggcagtgtggaagggaaatgtggggttggagacctcacacagagtccccact
tgggcactgcctagtggagctgtgagaagagggtcaccatcctctacaccccaaaatggt
agatccaccaacaacttgcaccatgtacctggaaaaactgcagacactcaacaccagcct
gtgaaagcagtcaagagggaggttgtaccttgcaaacccacagaggcggagctgcccagg
gctgtggcagcccaccttttgcatcagcataacctagataaccctgattttgttcagggg
aataatgtgcccagtggatctcaagtgggagcatttcggaactctttgctggctgatctg
actgtcacagcactggagctccctaactattcagttagatcccatggcccaggatccagg
ctggcccacatagactcagactccaggtctgcccagctccagactggttcccatgacacc
agtgtccaggccagcccctggaaccccacactacagatttacttgaacaaacccagggtc
cagaactgctacagtacatcccaataccaggctgacctcatggacccaagctccaggacc
actgctacagatccaggatccaggacagactttgtggatccaggaccaaagacccaagcc
tactattatatcatggacccaggtgccagacctgctcaaatattaatccagacaccaaac
cagtctctccagagattctgttacatggcccacacagaatctctagatgaactgactggt
gaagggttttccctgctgaagccagtctataaagaatggaaaagggacttggtgccctgc
atcccagctactccagccatgactaaaaggggccatggtacagctcgggctattgcttca
gagggtggaagtcccaagccttggcagcttccatgtggtattgagcctgcaggtccacag
aaatctataattaaggtttgggaacctccacctagatttcagaggatgtatggaaactcc
tggatgtccaggcagaagttagctgcagggtctgggccctcatggagaacttctgctagg
gcagtgtggaagggaaatgtgagattggagcccccacacagagtccctactgggacacca
cctagtggagctgtgagaatagggccaccatcctccagaccccagaatggtagatctacc
gacagcttgctccatgtgcctggaaaagtcacagacactcaacaccagcccatgaaagca
gccaggaatgggactataccctgcaaagccacaggggcggagctgcccaaggccatggga
gcccactttttgcatcagcatgacctggataagctggcgaaacgcgtgaaggccgtacac
aaggcaatgacggtgatggcaatgattcccacgggagaaccaactgtgatccagaccttt
ggcaatcctcacagtaatgcaaaggagactttaccattctcttcctcattttacagaaaa
agaactagaaagggagaaatcaagtaa

>gi568815586r:10709140_10910075|GENSCAN_predicted_peptide_3|134_aa
MLLVLLSVVLLALSSAQSTDNDVNYEDFTFTIPDVEDSSQRPDQGPQRPPPEGLLPRPPG
DSGNQDDGPQQRPPKPGGHHRHPPPPPFQNQQRPPRRGHRQLSLPRFPSVSLQEASSFFQ
RDRPARHPQEQPLW

>gi568815586r:10709140_10910075|GENSCAN_predicted_CDS_3|405_bp
atgctgctggtcctgctctcagtggtccttctggctctgagctcagctcagagcacagat
aatgatgtgaactatgaagactttactttcaccataccagatgtagaggactcaagtcag
agaccagatcagggaccccagagacctcctcctgaaggactcctacctagaccccctggt
gatagtggtaaccaagatgatggtcctcagcagagaccaccaaaaccaggaggccatcac
cgccatcctcccccacctccttttcaaaatcagcaacgaccaccccgacgaggacaccgt
caactctctctaccccgatttccttctgtcagcctgcaggaagcatcatcattcttccag
agggacagaccagcaagacatccccaggagcaaccactctggtaa

>gi568815586r:10709140_10910075|GENSCAN_predicted_peptide_4|165_aa
MDGPATPVSTDSNPPTQQEDSSACKCTHLEKRLFPLLLVAQLLLSPPGAAAVKCQLDPAK
WQDPQHSSICSVLHLRHWKGCEPDIGSQSTCFPEPESCLPVAADTDSNVTPATQQQRCCT
LACNLGTGPLHLLLSLLMQLGARACATGSDLTSTSSRATVNLHVP

>gi568815586r:10709140_10910075|GENSCAN_predicted_CDS_4|498_bp
atggatggccctgctacacctgtgagcactgacagcaacccgcccacccagcaggaagac
agcagtgcatgtaagtgcacacaccttgagaaaaggctcttcccactgctgctggtggca
cagttgctgctgtcaccaccgggggctgcagcagtgaaatgccagttggacccagcaaag
tggcaggatcctcagcattctagcatatgcagtgttctgcacctcaggcactggaaaggc
tgtgaaccagacatagggagccaaagcacatgctttccagaaccagagagctgcctccct
gtggctgctgacacagacagcaatgtcacccccgcaacacagcagcagagatgctgcaca
cttgcatgcaacctggggacaggccctctccatctgctgctgagtctgctgatgcagctg
ggggccagagcatgtgccactggcagtgacctgacttccaccagcagcagagccactgtg
aacttgcacgtaccctga

>gi568815586r:10709140_10910075|GENSCAN_predicted_peptide_5|82_aa
MDGTGGHYVKGNKPGTEKQTVHVLTYVDHTETKKPEYIEKHINETIHFPELKVNSPYRKG
PMIIQKPKFNIFRAQCKKTISG

>gi568815586r:10709140_10910075|GENSCAN_predicted_CDS_5|249_bp
atggatggaactggagggcattatgttaagggaaataagccaggcacagaaaaacaaaca
gtgcatgttctcacttatgttgatcacacagagaccaagaaaccagaatatattgagaaa
cacatcaatgaaacaatacatttcccagaactaaaggttaattctccatatcgaaagggc
ccaatgattatccaaaagcccaaatttaacattttcagggctcagtgcaagaagacaatt
agtggctaa

>gi568815586r:10709140_10910075|GENSCAN_predicted_peptide_6|340_aa
MESALPSIFTLVIIAEFIIGNLSNGFIVLINCIDWVSKRELSSVDKLLIILAISRIGLIW
EILGYWRDWPKLLIQESGGSEYLEICLLVEQNPPPPTKISAQVISRALEKQGTLPSEHWV
AQIPSGKRYLLTFQCKASSSEGKMDRELTRFSQHKVGSDTRASCKMLLILLSVALLAFSS
AQDLNEDGGDSEQFLDEERQGPPLGGQQSQPSAGDGNQDDGPQQGPPQQGGQQQQGPPPP
QGKPQGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPPQGRPQGPPQQGGHPRPPRGRPQ
GPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQSPQ

>gi568815586r:10709140_10910075|GENSCAN_predicted_CDS_6|1023_bp
atggaaagtgccctgccgagtatcttcactcttgtaataattgcagaattcataattggg
aatttgagcaatggatttatagtactgatcaactgcattgactgggtcagtaaaagagag
ctgtcctcagtcgataaactcctcattatcttggcaatctccagaattgggctgatctgg
gaaatattaggatattggagagattggcctaaactcttaatccaggagagtgggggctct
gaatacctggaaatctgcctgcttgtggagcagaacccacccccaccaaccaagatttct
gcacaggttatctccagggctttggagaaacaaggtactcttccctctgagcactgggtt
gctcagatccccagtggaaagagatatttgcttacattccagtgtaaagcttcttcttca
gaaggcaagatggacagggagctgacacgtttctcccagcacaaagttgggagtgacacc
agagcctcctgcaagatgcttctgattctgctgtcagtggccctgctggccttcagctca
gctcaggatttaaatgaagatggaggagactctgagcagttcctagatgaggagcgtcag
ggaccacctttgggaggacagcaatctcaaccctctgctggtgatgggaaccaggatgat
ggccctcagcagggaccaccccaacaaggaggccagcagcaacaaggtccaccacctcct
cagggaaagccacaaggaccaccccaacaaggaggccagcagcaacaaggtccaccacct
cctcagggaaagccacaaggaccaccccaacagggaggccatccccctcctcctcaagga
aggccacaaggaccaccccaacagggaggccatccccgtcctcctcgaggaaggccacaa
ggaccaccccaacagggaggccatcagcaaggtcctcccccacctcctcctggaaagccc
cagggaccacctccccaagggggccgcccacaaggacctccacaggggcagtctcctcag
taa